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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF CARM1, SINEFUNGIN, AND H3 PEPTIDE (R17)
Keywords PROTEIN-SUBSTRATE TERNARY COMPLEX, TRANSFERASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5DX0     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   HISTONE-ARGININE METHYLTRANSFERASE CARM1  A 343 2751 0
2  Protein   HISTONE-ARGININE METHYLTRANSFERASE CARM1  B 343 2751 0
3  Protein   HISTONE-ARGININE METHYLTRANSFERASE CARM1  C 343 2751 0
4  Protein   HISTONE-ARGININE METHYLTRANSFERASE CARM1  D 343 2751 0
5  Protein   H3 PEPTIDE  F 9 62 3
6  Protein   H3 PEPTIDE  G 10 67 3
7  Protein   H3 PEPTIDE  H 9 62 3
8  Protein   H3 PEPTIDE  I 10 67 3
9  Ligand   HISTONE-ARGININE METHYLTRANSFERASE CARM1  A 3 0 38
10  Ligand   HISTONE-ARGININE METHYLTRANSFERASE CARM1  B 2 0 32
11  Ligand   HISTONE-ARGININE METHYLTRANSFERASE CARM1  C 3 0 38
12  Ligand   HISTONE-ARGININE METHYLTRANSFERASE CARM1  D 2 0 32
13 Water     458 0 458
total       1878 11262 610
Proteins
Unit 1 SER135 VAL136 PHE137 SER138 GLU139 ARG140 THR141 GLU142 GLU143 SER144 SER145 ALA146 VAL147 GLN148 TYR149 PHE150 GLN151 PHE152 TYR153 GLY154 TYR155 LEU156 SER157 GLN158 GLN159 GLN160 ASN161 MET162 MET163 GLN164 ASP165 TYR166 VAL167 ARG168 THR169 GLY170 THR171 TYR172 GLN173 ARG174 ALA175 ILE176 LEU177 GLN178 ASN179 HIS180 THR181 ASP182 PHE183 LYS184 ASP185 LYS186 ILE187 VAL188 LEU189 ASP190 VAL191 GLY192 CYS193 GLY194 SER195 GLY196 ILE197 LEU198 SER199 PHE200 PHE201 ALA202 ALA203 GLN204 ALA205 GLY206 ALA207 ARG208 LYS209 ILE210 TYR211 ALA212 VAL213 GLU214 ALA215 SER216 THR217 MET218 ALA219 GLN220 HIS221 ALA222 GLU223 VAL224 LEU225 VAL226 LYS227 SER228 ASN229 ASN230 LEU231 THR232 ASP233 ARG234 ILE235 VAL236 VAL237 ILE238 PRO239 GLY240 LYS241 VAL242 GLU243 GLU244 VAL245 SER246 LEU247 PRO248 GLU249 GLN250 VAL251 ASP252 ILE253 ILE254 ILE255 SER256 GLU257 PRO258 MET259 GLY260 TYR261 MET262 LEU263 PHE264 ASN265 GLU266 ARG267 MET268 LEU269 GLU270 SER271 TYR272 LEU273 HIS274 ALA275 LYS276 LYS277 TYR278 LEU279 LYS280 PRO281 SER282 GLY283 ASN284 MET285 PHE286 PRO287 THR288 ILE289 GLY290 ASP291 VAL292 HIS293 LEU294 ALA295 PRO296 PHE297 THR298 ASP299 GLU300 GLN301 LEU302 TYR303 MET304 GLU305 GLN306 PHE307 THR308 LYS309 ALA310 ASN311 PHE312 TRP313 TYR314 GLN315 PRO316 SER317 PHE318 HIS319 GLY320 VAL321 ASP322 LEU323 SER324 ALA325 LEU326 ARG327 GLY328 ALA329 ALA330 VAL331 ASP332 GLU333 TYR334 PHE335 ARG336 GLN337 PRO338 VAL339 VAL340 ASP341 THR342 PHE343 ASP344 ILE345 ARG346 ILE347 LEU348 MET349 ALA350 LYS351 SER352 VAL353 LYS354 TYR355 THR356 VAL357 ASN358 PHE359 LEU360 GLU361 ALA362 LYS363 GLU364 GLY365 ASP366 LEU367 HIS368 ARG369 ILE370 GLU371 ILE372 PRO373 PHE374 LYS375 PHE376 HIS377 MET378 LEU379 HIS380 SER381 GLY382 LEU383 VAL384 HIS385 GLY386 LEU387 ALA388 PHE389 TRP390 PHE391 ASP392 VAL393 ALA394 PHE395 ILE396 GLY397 SER398 ILE399 MET400 THR401 VAL402 TRP403 LEU404 SER405 THR406 ALA407 PRO408 THR409 GLU410 PRO411 LEU412 THR413 HIS414 TRP415 TYR416 GLN417 VAL418 ARG419 CYS420 LEU421 PHE422 GLN423 SER424 PRO425 LEU426 PHE427 ALA428 LYS429 ALA430 GLY431 ASP432 THR433 LEU434 SER435 GLY436 THR437 CYS438 LEU439 LEU440 ILE441 ALA442 ASN443 LYS444 ARG445 GLN446 SER447 TYR448 ASP449 ILE450 SER451 ILE452 VAL453 ALA454 GLN455 VAL456 ASP457 GLN458 THR459 GLY460 SER461 LYS462 SER463 SER464 ASN465 LEU466 LEU467 ASP468 LEU469 LYS470 ASN471 PRO472 PHE473 PHE474 ARG475 TYR476 THR477
Unit 2 SER135 VAL136 PHE137 SER138 GLU139 ARG140 THR141 GLU142 GLU143 SER144 SER145 ALA146 VAL147 GLN148 TYR149 PHE150 GLN151 PHE152 TYR153 GLY154 TYR155 LEU156 SER157 GLN158 GLN159 GLN160 ASN161 MET162 MET163 GLN164 ASP165 TYR166 VAL167 ARG168 THR169 GLY170 THR171 TYR172 GLN173 ARG174 ALA175 ILE176 LEU177 GLN178 ASN179 HIS180 THR181 ASP182 PHE183 LYS184 ASP185 LYS186 ILE187 VAL188 LEU189 ASP190 VAL191 GLY192 CYS193 GLY194 SER195 GLY196 ILE197 LEU198 SER199 PHE200 PHE201 ALA202 ALA203 GLN204 ALA205 GLY206 ALA207 ARG208 LYS209 ILE210 TYR211 ALA212 VAL213 GLU214 ALA215 SER216 THR217 MET218 ALA219 GLN220 HIS221 ALA222 GLU223 VAL224 LEU225 VAL226 LYS227 SER228 ASN229 ASN230 LEU231 THR232 ASP233 ARG234 ILE235 VAL236 VAL237 ILE238 PRO239 GLY240 LYS241 VAL242 GLU243 GLU244 VAL245 SER246 LEU247 PRO248 GLU249 GLN250 VAL251 ASP252 ILE253 ILE254 ILE255 SER256 GLU257 PRO258 MET259 GLY260 TYR261 MET262 LEU263 PHE264 ASN265 GLU266 ARG267 MET268 LEU269 GLU270 SER271 TYR272 LEU273 HIS274 ALA275 LYS276 LYS277 TYR278 LEU279 LYS280 PRO281 SER282 GLY283 ASN284 MET285 PHE286 PRO287 THR288 ILE289 GLY290 ASP291 VAL292 HIS293 LEU294 ALA295 PRO296 PHE297 THR298 ASP299 GLU300 GLN301 LEU302 TYR303 MET304 GLU305 GLN306 PHE307 THR308 LYS309 ALA310 ASN311 PHE312 TRP313 TYR314 GLN315 PRO316 SER317 PHE318 HIS319 GLY320 VAL321 ASP322 LEU323 SER324 ALA325 LEU326 ARG327 GLY328 ALA329 ALA330 VAL331 ASP332 GLU333 TYR334 PHE335 ARG336 GLN337 PRO338 VAL339 VAL340 ASP341 THR342 PHE343 ASP344 ILE345 ARG346 ILE347 LEU348 MET349 ALA350 LYS351 SER352 VAL353 LYS354 TYR355 THR356 VAL357 ASN358 PHE359 LEU360 GLU361 ALA362 LYS363 GLU364 GLY365 ASP366 LEU367 HIS368 ARG369 ILE370 GLU371 ILE372 PRO373 PHE374 LYS375 PHE376 HIS377 MET378 LEU379 HIS380 SER381 GLY382 LEU383 VAL384 HIS385 GLY386 LEU387 ALA388 PHE389 TRP390 PHE391 ASP392 VAL393 ALA394 PHE395 ILE396 GLY397 SER398 ILE399 MET400 THR401 VAL402 TRP403 LEU404 SER405 THR406 ALA407 PRO408 THR409 GLU410 PRO411 LEU412 THR413 HIS414 TRP415 TYR416 GLN417 VAL418 ARG419 CYS420 LEU421 PHE422 GLN423 SER424 PRO425 LEU426 PHE427 ALA428 LYS429 ALA430 GLY431 ASP432 THR433 LEU434 SER435 GLY436 THR437 CYS438 LEU439 LEU440 ILE441 ALA442 ASN443 LYS444 ARG445 GLN446 SER447 TYR448 ASP449 ILE450 SER451 ILE452 VAL453 ALA454 GLN455 VAL456 ASP457 GLN458 THR459 GLY460 SER461 LYS462 SER463 SER464 ASN465 LEU466 LEU467 ASP468 LEU469 LYS470 ASN471 PRO472 PHE473 PHE474 ARG475 TYR476 THR477
Unit 3 SER135 VAL136 PHE137 SER138 GLU139 ARG140 THR141 GLU142 GLU143 SER144 SER145 ALA146 VAL147 GLN148 TYR149 PHE150 GLN151 PHE152 TYR153 GLY154 TYR155 LEU156 SER157 GLN158 GLN159 GLN160 ASN161 MET162 MET163 GLN164 ASP165 TYR166 VAL167 ARG168 THR169 GLY170 THR171 TYR172 GLN173 ARG174 ALA175 ILE176 LEU177 GLN178 ASN179 HIS180 THR181 ASP182 PHE183 LYS184 ASP185 LYS186 ILE187 VAL188 LEU189 ASP190 VAL191 GLY192 CYS193 GLY194 SER195 GLY196 ILE197 LEU198 SER199 PHE200 PHE201 ALA202 ALA203 GLN204 ALA205 GLY206 ALA207 ARG208 LYS209 ILE210 TYR211 ALA212 VAL213 GLU214 ALA215 SER216 THR217 MET218 ALA219 GLN220 HIS221 ALA222 GLU223 VAL224 LEU225 VAL226 LYS227 SER228 ASN229 ASN230 LEU231 THR232 ASP233 ARG234 ILE235 VAL236 VAL237 ILE238 PRO239 GLY240 LYS241 VAL242 GLU243 GLU244 VAL245 SER246 LEU247 PRO248 GLU249 GLN250 VAL251 ASP252 ILE253 ILE254 ILE255 SER256 GLU257 PRO258 MET259 GLY260 TYR261 MET262 LEU263 PHE264 ASN265 GLU266 ARG267 MET268 LEU269 GLU270 SER271 TYR272 LEU273 HIS274 ALA275 LYS276 LYS277 TYR278 LEU279 LYS280 PRO281 SER282 GLY283 ASN284 MET285 PHE286 PRO287 THR288 ILE289 GLY290 ASP291 VAL292 HIS293 LEU294 ALA295 PRO296 PHE297 THR298 ASP299 GLU300 GLN301 LEU302 TYR303 MET304 GLU305 GLN306 PHE307 THR308 LYS309 ALA310 ASN311 PHE312 TRP313 TYR314 GLN315 PRO316 SER317 PHE318 HIS319 GLY320 VAL321 ASP322 LEU323 SER324 ALA325 LEU326 ARG327 GLY328 ALA329 ALA330 VAL331 ASP332 GLU333 TYR334 PHE335 ARG336 GLN337 PRO338 VAL339 VAL340 ASP341 THR342 PHE343 ASP344 ILE345 ARG346 ILE347 LEU348 MET349 ALA350 LYS351 SER352 VAL353 LYS354 TYR355 THR356 VAL357 ASN358 PHE359 LEU360 GLU361 ALA362 LYS363 GLU364 GLY365 ASP366 LEU367 HIS368 ARG369 ILE370 GLU371 ILE372 PRO373 PHE374 LYS375 PHE376 HIS377 MET378 LEU379 HIS380 SER381 GLY382 LEU383 VAL384 HIS385 GLY386 LEU387 ALA388 PHE389 TRP390 PHE391 ASP392 VAL393 ALA394 PHE395 ILE396 GLY397 SER398 ILE399 MET400 THR401 VAL402 TRP403 LEU404 SER405 THR406 ALA407 PRO408 THR409 GLU410 PRO411 LEU412 THR413 HIS414 TRP415 TYR416 GLN417 VAL418 ARG419 CYS420 LEU421 PHE422 GLN423 SER424 PRO425 LEU426 PHE427 ALA428 LYS429 ALA430 GLY431 ASP432 THR433 LEU434 SER435 GLY436 THR437 CYS438 LEU439 LEU440 ILE441 ALA442 ASN443 LYS444 ARG445 GLN446 SER447 TYR448 ASP449 ILE450 SER451 ILE452 VAL453 ALA454 GLN455 VAL456 ASP457 GLN458 THR459 GLY460 SER461 LYS462 SER463 SER464 ASN465 LEU466 LEU467 ASP468 LEU469 LYS470 ASN471 PRO472 PHE473 PHE474 ARG475 TYR476 THR477
Unit 4 SER135 VAL136 PHE137 SER138 GLU139 ARG140 THR141 GLU142 GLU143 SER144 SER145 ALA146 VAL147 GLN148 TYR149 PHE150 GLN151 PHE152 TYR153 GLY154 TYR155 LEU156 SER157 GLN158 GLN159 GLN160 ASN161 MET162 MET163 GLN164 ASP165 TYR166 VAL167 ARG168 THR169 GLY170 THR171 TYR172 GLN173 ARG174 ALA175 ILE176 LEU177 GLN178 ASN179 HIS180 THR181 ASP182 PHE183 LYS184 ASP185 LYS186 ILE187 VAL188 LEU189 ASP190 VAL191 GLY192 CYS193 GLY194 SER195 GLY196 ILE197 LEU198 SER199 PHE200 PHE201 ALA202 ALA203 GLN204 ALA205 GLY206 ALA207 ARG208 LYS209 ILE210 TYR211 ALA212 VAL213 GLU214 ALA215 SER216 THR217 MET218 ALA219 GLN220 HIS221 ALA222 GLU223 VAL224 LEU225 VAL226 LYS227 SER228 ASN229 ASN230 LEU231 THR232 ASP233 ARG234 ILE235 VAL236 VAL237 ILE238 PRO239 GLY240 LYS241 VAL242 GLU243 GLU244 VAL245 SER246 LEU247 PRO248 GLU249 GLN250 VAL251 ASP252 ILE253 ILE254 ILE255 SER256 GLU257 PRO258 MET259 GLY260 TYR261 MET262 LEU263 PHE264 ASN265 GLU266 ARG267 MET268 LEU269 GLU270 SER271 TYR272 LEU273 HIS274 ALA275 LYS276 LYS277 TYR278 LEU279 LYS280 PRO281 SER282 GLY283 ASN284 MET285 PHE286 PRO287 THR288 ILE289 GLY290 ASP291 VAL292 HIS293 LEU294 ALA295 PRO296 PHE297 THR298 ASP299 GLU300 GLN301 LEU302 TYR303 MET304 GLU305 GLN306 PHE307 THR308 LYS309 ALA310 ASN311 PHE312 TRP313 TYR314 GLN315 PRO316 SER317 PHE318 HIS319 GLY320 VAL321 ASP322 LEU323 SER324 ALA325 LEU326 ARG327 GLY328 ALA329 ALA330 VAL331 ASP332 GLU333 TYR334 PHE335 ARG336 GLN337 PRO338 VAL339 VAL340 ASP341 THR342 PHE343 ASP344 ILE345 ARG346 ILE347 LEU348 MET349 ALA350 LYS351 SER352 VAL353 LYS354 TYR355 THR356 VAL357 ASN358 PHE359 LEU360 GLU361 ALA362 LYS363 GLU364 GLY365 ASP366 LEU367 HIS368 ARG369 ILE370 GLU371 ILE372 PRO373 PHE374 LYS375 PHE376 HIS377 MET378 LEU379 HIS380 SER381 GLY382 LEU383 VAL384 HIS385 GLY386 LEU387 ALA388 PHE389 TRP390 PHE391 ASP392 VAL393 ALA394 PHE395 ILE396 GLY397 SER398 ILE399 MET400 THR401 VAL402 TRP403 LEU404 SER405 THR406 ALA407 PRO408 THR409 GLU410 PRO411 LEU412 THR413 HIS414 TRP415 TYR416 GLN417 VAL418 ARG419 CYS420 LEU421 PHE422 GLN423 SER424 PRO425 LEU426 PHE427 ALA428 LYS429 ALA430 GLY431 ASP432 THR433 LEU434 SER435 GLY436 THR437 CYS438 LEU439 LEU440 ILE441 ALA442 ASN443 LYS444 ARG445 GLN446 SER447 TYR448 ASP449 ILE450 SER451 ILE452 VAL453 ALA454 GLN455 VAL456 ASP457 GLN458 THR459 GLY460 SER461 LYS462 SER463 SER464 ASN465 LEU466 LEU467 ASP468 LEU469 LYS470 ASN471 PRO472 PHE473 PHE474 ARG475 TYR476 THR477
Unit 5 ACE0 GLY1 LYS2 ALA3 PRO4 ARG5 LYS6 GLN7 LEU8
Unit 6 ACE0 GLY1 LYS2 ALA3 PRO4 ARG5 LYS6 GLN7 LEU8 ALA9
Unit 7 ACE0 GLY1 LYS2 ALA3 PRO4 ARG5 LYS6 GLN7 LEU8
Unit 8 ACE0 GLY1 LYS2 ALA3 PRO4 ARG5 LYS6 GLN7 LEU8 ALA9
Ligands
Unit 9 SFG501 GOL502 SO4503
Unit 10 SFG501 SO4502
Unit 11 SFG501 GOL502 SO4503
Unit 12 SFG501 SO4502
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany