5DUB - Sequence, Chains, Asymmetric and Biological Units

• Title: CONTEXT-INDEPENDENT ANTI-HYPUSINE ANTIBODY FABHPU98 IN COMPL DEOXYHYPUSINE
• Keywords: DEOXYHYPUSINE, ANTIBODY, FABHPU98, EIF5A, IMMUNE SYSTEM
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5DUB	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	FAB HPU98 HEAVY CHAIN	A	209	1551	8
2	Protein	FAB HPU98 LIGHT CHAIN	B	214	1585	0
3	Protein	FAB HPU98 HEAVY CHAIN	H	207	1541	8
4	Protein	FAB HPU98 LIGHT CHAIN	L	211	1567	0
5	Protein	PEPTIDE: GLY-5GG-GLY-ALA	P	4	13	14
6	Ligand	FAB HPU98 HEAVY CHAIN	A	9	0	41
7	Ligand	FAB HPU98 LIGHT CHAIN	B	8	0	34
8	Ligand	FAB HPU98 HEAVY CHAIN	H	7	0	31
9	Ligand	FAB HPU98 LIGHT CHAIN	L	2	0	10
10	Ligand	PEPTIDE: GLY-5GG-GLY-ALA	P	1	0	5
11	Water			235	0	235
total				1107	6257	386

Proteins

Unit 1	PCA 2 SER 3 VAL 4 GLU 5 GLU 6 SER 7 GLY 8 GLY 9 ARG 10 LEU 11 VAL 12 THR 13 PRO 14 GLY 15 THR 16 PRO 17 LEU 18 THR 19 LEU 20 THR 21 CYS 22 THR 23 VAL 24 SER 25 GLY 26 PHE 27 SER 28 LEU 29 SER 30 THR 31 TYR 32 THR 33 MET 34 ASN 35 TRP 36 VAL 37 ARG 38 GLN 39 ALA 40 PRO 41 GLY 42 LYS 43 GLY 44 LEU 45 GLU 46 TRP 47 ILE 48 GLY 49 ASP 50 ILE 51 TYR 52 THR 53 ASP 54 GLY 55 ASN 56 THR 57 TYR 58 TYR 59 ALA 60 ASN 61 TRP 62 ALA 63 LYS 64 GLY 65 ARG 66 PHE 67 THR 68 ILE 69 SER 70 LYS 71 THR 72 SER 73 THR 74 THR 75 VAL 76 ASP 77 LEU 78 LYS 79 ILE 80 THR 81 SER 82 PRO 82A THR 83 THR 84 GLU 85 ASP 86 THR 87 ALA 88 THR 89 TYR 90 PHE 91 CYS 92 ALA 93 ARG 94 ASP 95 SER 96 TRP 97 ASP 98 ALA 99 SER 100 SER 100A TYR 100B TYR 100C GLY 100D LEU 100E ASP 101 LEU 102 TRP 103 GLY 104 GLN 105 GLY 106 THR 107 LEU 108 VAL 109 THR 110 VAL 111 SER 112 SER 113 GLY 114 GLN 115 PRO 116 LYS 117 GLY 118 PRO 119 SER 120 VAL 121 PHE 122 PRO 123 LEU 124 ALA 125 PRO 126 CYS 127 CYS 128 SER 133 SER 134 THR 135 VAL 136 THR 137 LEU 138 GLY 139 CYS 140 LEU 141 VAL 142 LYS 143 GLY 144 TYR 145 LEU 146 PRO 147 GLU 148 PRO 149 VAL 150 THR 151 VAL 152 THR 153 TRP 154 ASN 155 SER 156 GLY 157 THR 158 LEU 159 THR 160 ASN 161 GLY 162 VAL 163 ARG 164 THR 165 PHE 166 PRO 167 SER 168 VAL 169 ARG 170 GLN 171 SER 172 SER 173 GLY 174 LEU 175 TYR 176 SER 177 LEU 178 SER 179 SER 180 VAL 181 VAL 182 SER 183 VAL 184 THR 185 SER 186 SER 187 PRO 190 VAL 191 THR 192 CYS 193 ASN 194 VAL 195 ALA 196 HIS 197 PRO 198 ALA 199 THR 200 ASN 201 THR 202 LYS 203 VAL 204 ASP 205 LYS 206 THR 207 VAL 208 ALA 209 PRO 210
Unit 2	ALA 1 ILE 2 LYS 3 MET 4 THR 5 GLN 6 THR 7 PRO 8 SER 9 SER 10 VAL 11 SER 12 ALA 13 ALA 14 VAL 15 GLY 16 GLY 17 THR 18 VAL 19 THR 20 ILE 21 ASN 22 CYS 23 GLN 24 ALA 25 SER 26 GLU 27 ASP 28 ILE 29 LYS 30 ARG 31 TYR 32 LEU 33 ALA 34 TRP 35 TYR 36 GLN 37 GLN 38 LYS 39 PRO 40 GLY 41 GLN 42 PRO 43 PRO 44 LYS 45 LEU 46 LEU 47 ILE 48 TYR 49 ALA 50 ALA 51 SER 52 LYS 53 LEU 54 ALA 55 SER 56 GLY 57 VAL 58 SER 59 SER 60 ARG 61 PHE 62 LYS 63 GLY 64 SER 65 GLY 66 SER 67 GLY 68 THR 69 GLU 70 TYR 71 THR 72 LEU 73 THR 74 ILE 75 SER 76 GLY 77 VAL 78 GLN 79 CYS 80 ASP 81 ASP 82 ALA 83 ALA 84 THR 85 TYR 86 TYR 87 CYS 88 GLN 89 GLN 90 GLY 91 TYR 92 THR 93 SER 94 SER 95 ASN 95A VAL 95B ASN 95C ASN 96 ALA 97 PHE 98 GLY 99 GLY 100 GLY 101 THR 102 GLU 103 VAL 104 VAL 105 VAL 106 LYS 107 GLY 108 ASP 109 PRO 110 VAL 111 ALA 112 PRO 113 THR 114 VAL 115 LEU 116 ILE 117 PHE 118 PRO 119 PRO 120 ALA 121 ALA 122 ASP 123 GLN 124 VAL 125 ALA 126 THR 127 GLY 128 THR 129 VAL 130 THR 131 ILE 132 VAL 133 CYS 134 VAL 135 ALA 136 ASN 137 LYS 138 TYR 139 PHE 140 PRO 141 ASP 142 VAL 143 THR 144 VAL 145 THR 146 TRP 147 GLU 148 VAL 149 ASP 150 GLY 151 THR 152 THR 153 GLN 154 THR 155 THR 156 GLY 157 ILE 158 GLU 159 ASN 160 SER 161 LYS 162 THR 163 PRO 164 GLN 165 ASN 166 SER 167 ALA 168 ASP 169 CYS 170 THR 171 TYR 172 ASN 173 LEU 174 SER 175 SER 176 THR 177 LEU 178 THR 179 LEU 180 THR 181 SER 182 THR 183 GLN 184 TYR 185 ASN 186 SER 187 HIS 188 LYS 189 GLU 190 TYR 191 THR 192 CYS 193 LYS 194 VAL 195 THR 196 GLN 197 GLY 198 THR 199 THR 200 SER 201 VAL 202 VAL 203 GLN 204 SER 205 PHE 206 ASN 207 ARG 208 GLY 209 ASP 210 CYS 211
Unit 3	PCA 2 SER 3 VAL 4 GLU 5 GLU 6 SER 7 GLY 8 GLY 9 ARG 10 LEU 11 VAL 12 THR 13 PRO 14 GLY 15 THR 16 PRO 17 LEU 18 THR 19 LEU 20 THR 21 CYS 22 THR 23 VAL 24 SER 25 GLY 26 PHE 27 SER 28 LEU 29 SER 30 THR 31 TYR 32 THR 33 MET 34 ASN 35 TRP 36 VAL 37 ARG 38 GLN 39 ALA 40 PRO 41 GLY 42 LYS 43 GLY 44 LEU 45 GLU 46 TRP 47 ILE 48 GLY 49 ASP 50 ILE 51 TYR 52 THR 53 ASP 54 GLY 55 ASN 56 THR 57 TYR 58 TYR 59 ALA 60 ASN 61 TRP 62 ALA 63 LYS 64 GLY 65 ARG 66 PHE 67 THR 68 ILE 69 SER 70 LYS 71 THR 72 SER 73 THR 74 THR 75 VAL 76 ASP 77 LEU 78 LYS 79 ILE 80 THR 81 SER 82 PRO 82A THR 83 THR 84 GLU 85 ASP 86 THR 87 ALA 88 THR 89 TYR 90 PHE 91 CYS 92 ALA 93 ARG 94 ASP 95 SER 96 TRP 97 ASP 98 ALA 99 SER 100 SER 100A TYR 100B TYR 100C GLY 100D LEU 100E ASP 101 LEU 102 TRP 103 GLY 104 GLN 105 GLY 106 THR 107 LEU 108 VAL 109 THR 110 VAL 111 SER 112 SER 113 GLY 114 GLN 115 PRO 116 LYS 117 GLY 118 PRO 119 SER 120 VAL 121 PHE 122 PRO 123 LEU 124 ALA 125 PRO 126 CYS 127 SER 133 SER 134 THR 135 VAL 136 THR 137 LEU 138 GLY 139 CYS 140 LEU 141 VAL 142 LYS 143 GLY 144 TYR 145 LEU 146 PRO 147 GLU 148 PRO 149 VAL 150 THR 151 VAL 152 THR 153 TRP 154 ASN 155 SER 156 GLY 157 THR 158 LEU 159 THR 160 ASN 161 GLY 162 VAL 163 ARG 164 THR 165 PHE 166 PRO 167 SER 168 VAL 169 ARG 170 GLN 171 SER 172 SER 173 GLY 174 LEU 175 TYR 176 SER 177 LEU 178 SER 179 SER 180 VAL 181 VAL 182 SER 183 VAL 184 SER 188 GLN 189 PRO 190 VAL 191 THR 192 CYS 193 ASN 194 VAL 195 ALA 196 HIS 197 PRO 198 ALA 199 THR 200 ASN 201 THR 202 LYS 203 VAL 204 ASP 205 LYS 206 THR 207 VAL 208 ALA 209 PRO 210
Unit 4	ALA 1 ILE 2 LYS 3 MET 4 THR 5 GLN 6 THR 7 PRO 8 SER 9 SER 10 VAL 11 SER 12 ALA 13 ALA 14 VAL 15 GLY 16 GLY 17 THR 18 VAL 19 THR 20 ILE 21 ASN 22 CYS 23 GLN 24 ALA 25 SER 26 GLU 27 ASP 28 ILE 29 LYS 30 ARG 31 TYR 32 LEU 33 ALA 34 TRP 35 TYR 36 GLN 37 GLN 38 LYS 39 PRO 40 GLY 41 GLN 42 PRO 43 PRO 44 LYS 45 LEU 46 LEU 47 ILE 48 TYR 49 ALA 50 ALA 51 SER 52 LYS 53 LEU 54 ALA 55 SER 56 GLY 57 VAL 58 SER 59 SER 60 ARG 61 PHE 62 LYS 63 GLY 64 SER 65 GLY 66 SER 67 GLY 68 THR 69 GLU 70 TYR 71 THR 72 LEU 73 THR 74 ILE 75 SER 76 GLY 77 VAL 78 GLN 79 CYS 80 ASP 81 ASP 82 ALA 83 ALA 84 THR 85 TYR 86 TYR 87 CYS 88 GLN 89 GLN 90 GLY 91 TYR 92 THR 93 SER 94 SER 95 ASN 95A VAL 95B ASN 95C ASN 96 ALA 97 PHE 98 GLY 99 GLY 100 GLY 101 THR 102 GLU 103 VAL 104 VAL 105 VAL 106 LYS 107 GLY 108 ASP 109 PRO 110 VAL 111 ALA 112 PRO 113 THR 114 VAL 115 LEU 116 ILE 117 PHE 118 PRO 119 PRO 120 ALA 121 ALA 122 ASP 123 GLN 124 VAL 125 ALA 126 THR 127 GLY 128 THR 129 VAL 130 THR 131 ILE 132 VAL 133 CYS 134 VAL 135 ALA 136 ASN 137 LYS 138 TYR 139 PHE 140 PRO 141 ASP 142 VAL 143 THR 144 VAL 145 THR 146 TRP 147 GLU 148 VAL 149 ASP 150 GLY 151 THR 152 THR 153 GLN 154 THR 155 THR 156 GLY 157 ILE 158 GLU 159 ASN 160 SER 161 LYS 162 THR 163 PRO 164 GLN 165 ASN 166 SER 167 ALA 168 ASP 169 CYS 170 THR 171 TYR 172 ASN 173 LEU 174 SER 175 SER 176 THR 177 LEU 178 THR 179 LEU 180 THR 181 SER 182 THR 183 GLN 184 TYR 185 ASN 186 SER 187 HIS 188 LYS 189 GLU 190 TYR 191 THR 192 CYS 193 LYS 194 VAL 195 THR 196 GLN 197 GLY 198 THR 199 THR 200 SER 201 VAL 202 VAL 203 GLN 204 SER 205 PHE 206 ASN 207 ARG 208
Unit 5	GLY 3 5GG 4 GLY 5 ALA 6

Ligands

Unit 6	EDO 301 EDO 302 EDO 303 EDO 304 SO4 305 SO4 306 SO4 307 SO4 308 SO4 309
Unit 7	EDO 301 EDO 302 EDO 303 EDO 304 EDO 305 EDO 306 SO4 307 SO4 308
Unit 8	EDO 301 EDO 302 EDO 303 EDO 304 SO4 305 SO4 306 SO4 307
Unit 9	SO4 301 SO4 302
Unit 10	SO4 101