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Sequence, Chains, Asymmetric and Biological Units

Title THE STRUCTURE OF BD OXIDASE FROM GEOBACILLUS THERMODENITRIFI
Keywords BD OXIDASE, TERMINAL OXIDASE, OXIDOREDUCTASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   5DOQ     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   BD-TYPE QUINOL OXIDASE SUBUNIT I  A 432 3418 0
2  Protein   BD-TYPE QUINOL OXIDASE SUBUNIT II  B 330 2689 0
3  Protein   PUTATIVE MEMBRANE PROTEIN  C 30 234 0
4  Ligand   BD-TYPE QUINOL OXIDASE SUBUNIT I  A 3 0 130
total       795 6341 130

Proteins
Unit 1 MET1 ASN2 GLY3 TYR4 ASP5 PRO6 VAL7 LEU8 LEU9 SER10 ARG11 ILE12 LEU13 THR14 GLU15 LEU16 THR17 LEU18 THR19 VAL20 HIS21 ILE22 ILE23 TYR24 ALA25 THR26 ILE27 GLY28 VAL29 GLY30 VAL31 PRO32 LEU33 MET34 ILE35 ALA36 ILE37 ALA38 GLN39 TRP40 VAL41 GLY42 ILE43 ARG44 LYS45 ASN46 ASP47 MET48 HIS49 TYR50 ILE51 LEU52 LEU53 ALA54 ARG55 ARG56 TRP57 THR58 ARG59 GLY60 PHE61 VAL62 ILE63 THR64 VAL65 ALA66 VAL67 GLY68 VAL69 VAL70 THR71 GLY72 THR73 ALA74 ILE75 GLY76 LEU77 GLN78 LEU79 SER80 LEU81 LEU82 TRP83 PRO84 ASN85 PHE86 MET87 GLN88 LEU89 ALA90 GLY91 GLN92 VAL93 ILE94 SER95 LEU96 PRO97 LEU98 PHE99 MET100 GLU101 THR102 PHE103 ALA104 PHE105 PHE106 PHE107 GLU108 ALA109 ILE110 PHE111 LEU112 GLY113 ILE114 TYR115 LEU116 TYR117 THR118 TRP119 ASP120 ARG121 PHE122 GLU123 ASN124 GLN125 LYS126 LYS127 HIS128 LEU129 LEU130 LEU131 LEU132 ILE133 PRO134 VAL135 ALA136 ILE137 GLY138 SER139 SER140 ALA141 SER142 ALA143 MET144 PHE145 ILE146 THR147 MET148 VAL149 ASN150 ALA151 PHE152 MET153 ASN154 THR155 PRO156 GLN157 GLY158 PHE159 GLU160 LEU161 LYS162 ASN163 GLY164 GLU165 LEU166 VAL167 ASN168 ILE169 ASP170 PRO171 ILE172 VAL173 ALA174 MET175 PHE176 ASN177 PRO178 ALA179 MET180 PRO181 THR182 LYS183 VAL184 ALA185 HIS186 VAL187 LEU188 ALA189 THR190 SER191 TYR192 MET193 THR194 SER195 ALA196 PHE197 VAL198 LEU199 ALA200 SER201 ILE202 ALA203 ALA204 TRP205 HIS206 LEU207 TRP208 LYS209 GLY210 ASN211 ARG212 HIS213 ILE214 TYR215 HIS216 ARG217 LYS218 ALA219 LEU220 HIS221 LEU222 THR223 MET224 LYS225 THR226 ALA227 PHE228 ILE229 PHE230 SER231 VAL232 ALA233 SER234 ALA235 LEU236 VAL237 GLY238 ASP239 LEU240 SER241 GLY242 LYS243 PHE244 LEU245 ALA246 GLU247 TYR248 GLN249 PRO250 GLU251 LYS252 LEU253 ALA254 ALA255 ALA256 GLU257 TRP258 HIS259 PHE260 GLU261 THR262 SER263 SER264 HIS265 ALA266 PRO267 LEU268 ILE269 LEU270 PHE271 GLY272 THR273 LEU274 GLU275 GLU276 ASP277 ASN278 GLU279 VAL280 LYS281 TYR282 ALA283 LEU284 GLU285 ILE286 PRO287 TYR288 ALA289 LEU290 SER291 ILE292 LEU293 ALA294 HIS295 ASN296 HIS297 PRO298 ALA299 ALA300 VAL301 VAL302 THR303 GLY304 LEU305 ASN306 ASP307 ILE308 PRO309 GLU310 ASP311 GLU312 ARG313 PRO314 PRO315 LEU316 TYR317 ILE318 HIS319 TYR320 LEU321 PHE322 ASP323 VAL324 MET325 VAL326 THR327 ILE328 GLY329 VAL330 PHE331 LEU332 MET333 VAL334 VAL335 ALA336 ALA337 VAL338 TYR339 TRP340 LEU341 GLY342 SER343 ILE344 PHE345 ARG346 TRP347 LYS348 TRP349 THR350 ALA351 LYS352 ASN353 TRP354 PHE355 PHE356 GLY357 LEU358 LEU359 VAL360 ALA361 GLY362 GLY363 PRO364 LEU365 ALA366 MET367 ILE368 ALA369 ILE370 GLU371 ALA372 GLY373 TRP374 TYR375 LEU376 ALA377 GLU378 VAL379 GLY380 ARG381 GLN382 PRO383 TRP384 ILE385 LEU386 ARG387 GLY388 TYR389 MET390 LYS391 THR392 ALA393 GLU394 GLY395 ALA396 THR397 THR398 SER399 ALA400 HIS401 VAL402 ASP403 THR404 MET405 LEU406 VAL407 LEU408 PHE409 CYS410 LEU411 LEU412 TYR413 ILE414 VAL415 LEU416 VAL417 ILE418 ALA419 SER420 ALA421 THR422 VAL423 LEU424 ILE425 ARG426 MET427 PHE428 ARG429 ARG430 ASN431 PRO432
Unit 2 MET1 THR2 LEU3 GLU4 VAL5 ILE6 GLY7 ILE8 SER9 VAL10 LEU11 TRP12 LEU13 PHE14 LEU15 PHE16 GLY17 TYR18 ILE19 ILE20 VAL21 ALA22 SER23 ILE24 ASP25 PHE26 GLY27 ALA28 GLY29 PHE30 PHE31 SER32 VAL33 TYR34 SER35 HIS36 TRP37 ALA38 ASN39 GLN40 GLN41 HIS42 ILE43 LEU44 HIS45 ARG46 ILE47 ILE48 GLN49 ARG50 TYR51 LEU52 SER53 PRO54 VAL55 TRP56 GLU57 VAL58 THR59 ASN60 VAL61 PHE62 LEU63 VAL64 PHE65 PHE66 PHE67 VAL68 GLY69 ILE70 VAL71 GLY72 PHE73 PHE74 PRO75 LYS76 THR77 ALA78 TYR79 TYR80 TYR81 GLY82 SER83 ILE84 LEU85 LEU86 VAL87 PRO88 ALA89 SER90 ILE91 ALA92 ILE93 VAL94 LEU95 LEU96 ALA97 ILE98 ARG99 GLY100 SER101 TYR102 TYR103 ALA104 PHE105 HIS106 THR107 TYR108 GLY109 GLU110 THR111 GLU112 ARG113 ASN114 TRP115 TYR116 LEU117 LEU118 ALA119 TYR120 GLY121 LEU122 THR123 GLY124 LEU125 PHE126 ILE127 PRO128 ALA129 SER130 LEU131 SER132 ILE133 VAL134 LEU135 THR136 ILE137 SER138 GLU139 GLY140 GLY141 PHE142 VAL143 GLU144 GLU145 ASN146 ALA147 ALA148 GLY149 VAL150 ALA151 LEU152 ASP153 TYR154 GLY155 LYS156 LEU157 PHE158 ALA159 SER160 PRO161 LEU162 SER163 TRP164 SER165 VAL166 VAL167 LEU168 LEU169 SER170 VAL171 THR172 SER173 VAL174 LEU175 TYR176 ILE177 SER178 ALA179 VAL180 PHE181 LEU182 THR183 TYR184 TYR185 ALA186 ASP187 ALA188 ALA189 GLY190 ASP191 GLU192 GLN193 ALA194 ARG195 ALA196 LEU197 LEU198 ARG199 ARG200 TYR201 ALA202 LEU203 LEU204 TRP205 SER206 GLY207 PRO208 THR209 MET210 LEU211 SER212 ALA213 LEU214 LEU215 ILE216 ILE217 TYR218 GLN219 LEU220 ARG221 TYR222 HIS223 ASN224 PRO225 GLU226 HIS227 TYR228 ASP229 ASN230 LEU231 TRP232 ASN233 VAL234 ALA235 TRP236 MET237 LEU238 VAL239 ILE240 SER241 PHE242 LEU243 PHE244 PHE245 VAL246 ILE247 THR248 VAL249 TRP250 LEU251 LEU252 GLY253 ARG254 GLN255 ARG256 ARG257 PHE258 GLY259 TRP260 ALA261 PHE262 ILE263 ALA264 LEU265 LEU266 PHE267 GLN268 TYR269 ALA270 PHE271 ALA272 PHE273 TYR274 ALA275 TYR276 GLY277 ILE278 SER279 HIS280 TYR281 PRO282 TYR283 LEU284 LEU285 TYR286 PRO287 TYR288 LEU289 THR290 ILE291 TYR292 ASP293 GLY294 PHE295 THR296 ASN297 GLU298 THR299 MET300 ALA301 MET302 ALA303 LEU304 ILE305 VAL306 ALA307 PHE308 ILE309 ALA310 GLY311 LEU312 LEU313 LEU314 LEU315 ILE316 PRO317 SER318 LEU319 TYR320 LEU321 LEU322 MET323 ARG324 LEU325 PHE326 LEU327 PHE328 ASN329 LYS330
Unit 3 PHE766 LEU767 ILE768 MET769 TYR770 ALA771 PRO772 MET773 VAL774 VAL775 VAL776 ALA777 LEU778 SER779 VAL780 VAL781 ALA782 ALA783 PHE784 TRP785 VAL786 GLY787 LEU788 LYS789 ASP790 VAL791 HIS792 VAL793 ASN794 GLU795

Ligands
Unit 4 HEB501 HEB502 HDD503

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany