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Sequence, Chains, Asymmetric and Biological Units

Title 1.8 ANGSTROM CRYSTAL STRUCTURE OF LISTERIA MONOCYTOGENES LMO ALPHA-1,6-GLUCOSIDASE
Keywords GLYCOSIDE HYDROLASE FAMILY 13, STRUCTURAL GENOMICS, CENTER F STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, HYDROLAS
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   5DO8     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   LMO0184 PROTEIN  B 553 4586 0
2  Protein   LMO0184 PROTEIN  A 552 4580 0
3  Protein   LMO0184 PROTEIN  C 551 4571 0
4  Ligand   LMO0184 PROTEIN  B 3 0 27
5  Ligand   LMO0184 PROTEIN  A 3 0 27
6  Ligand   LMO0184 PROTEIN  C 4 0 28
7 Water     1761 0 1761
total       3427 13737 1843

Proteins
Unit 1 GLU3 LYS4 ASP5 TRP6 TRP7 LYS8 LYS9 SER10 VAL11 VAL12 TYR13 GLN14 ILE15 TYR16 PRO17 LYS18 SER19 PHE20 ASN21 ASP22 SER23 ASN24 GLY25 ASP26 GLY27 VAL28 GLY29 ASP30 ILE31 GLN32 GLY33 ILE34 ILE35 GLU36 LYS37 LEU38 ASP39 TYR40 LEU41 LYS42 GLU43 LEU44 GLY45 VAL46 ASP47 VAL48 ILE49 TRP50 LEU51 SER52 PRO53 VAL54 TYR55 ASP56 SER57 PRO58 GLN59 ASP60 ASP61 ASN62 GLY63 TYR64 ASP65 ILE66 ARG67 ASP68 TYR69 GLN70 LYS71 ILE72 TYR73 GLU74 GLU75 TYR76 GLY77 ASP78 MET79 ALA80 THR81 PHE82 ASP83 GLN84 LEU85 LEU86 GLN87 GLY88 LEU89 HIS90 ASP91 ARG92 ASP93 MET94 LYS95 LEU96 VAL97 MET98 ASP99 LEU100 VAL101 VAL102 ASN103 HIS104 THR105 SER106 ASP107 GLU108 HIS109 LYS110 TRP111 PHE112 GLU113 GLU114 SER115 ARG116 LYS117 SER118 LYS119 ASP120 ASN121 PRO122 TYR123 ARG124 ASP125 TYR126 TYR127 PHE128 TRP129 ARG130 GLU131 GLU132 ASN133 GLU134 ILE135 ASN136 ASN137 TRP138 GLY139 SER140 ILE141 PHE142 SER143 GLY144 PRO145 ALA146 TRP147 GLU148 LEU149 ASP150 GLU151 LYS152 THR153 GLY154 GLU155 TYR156 TYR157 LEU158 HIS159 LEU160 PHE161 SER162 LYS163 LYS164 GLN165 PRO166 ASP167 LEU168 ASN169 TRP170 GLU171 ASN172 PRO173 LYS174 LEU175 ARG176 GLN177 ASP178 VAL179 TYR180 ASN181 MET182 MET183 LYS184 PHE185 TRP186 LEU187 ASP188 LYS189 GLY190 ILE191 ASP192 GLY193 PHE194 ARG195 MET196 ASP197 VAL198 ILE199 ASN200 PHE201 ILE202 SER203 LYS204 ASN205 THR206 ASP207 PHE208 PRO209 ASP210 GLY211 PRO212 VAL213 PRO214 ASP215 GLY216 GLN217 ILE218 TYR219 GLY220 ASP221 ALA222 GLY223 ASN224 ASP225 PHE226 CYS227 ASN228 GLY229 PRO230 ARG231 ILE232 HIS233 GLU234 PHE235 LEU236 GLN237 GLU238 MET239 ASN240 GLN241 GLU242 VAL243 THR244 SER245 LYS246 TYR247 ASP248 VAL249 MET250 THR251 VAL252 GLY253 GLU254 MET255 PRO256 GLY257 ALA258 SER259 THR260 THR261 ASP262 ALA263 GLN264 ILE265 TYR266 THR267 ASN268 PRO269 ALA270 ASN271 ASN272 GLU273 VAL274 ASP275 MET276 ILE277 PHE278 THR279 PHE280 GLU281 HIS282 MET283 ASN284 LEU285 ASP286 SER287 ASP288 SER289 ASP290 ASN291 LYS292 TRP293 ASP294 LEU295 LYS296 PRO297 ILE298 TYR299 LEU300 PRO301 ASP302 LEU303 LYS304 GLU305 ASN306 MET307 SER308 GLU309 TRP310 GLN311 VAL312 ALA313 LEU314 GLN315 GLU316 ASN317 GLY318 TRP319 ASN320 SER321 LEU322 TYR323 TRP324 ASN325 ASN326 HIS327 ASP328 GLN329 PRO330 ARG331 ILE332 VAL333 SER334 ARG335 PHE336 GLY337 ASN338 ASP339 ASN340 ARG341 PHE342 ARG343 VAL344 ARG345 SER346 ALA347 LYS348 MET349 LEU350 ALA351 THR352 CYS353 LEU354 HIS355 MET356 MET357 LYS358 GLY359 THR360 PRO361 TYR362 ILE363 TYR364 GLN365 GLY366 GLU367 GLU368 ILE369 GLY370 MET371 THR372 ASN373 VAL374 HIS375 PHE376 GLU377 THR378 LEU379 ASP380 ASP381 TYR382 ARG383 ASP384 ILE385 GLU386 THR387 LEU388 ASN389 MET390 TYR391 LYS392 GLU393 ARG394 LYS395 GLU396 GLN397 GLY398 HIS399 SER400 HIS401 GLU402 SER403 ILE404 MET405 GLN406 SER407 ILE408 TYR409 THR410 LYS411 GLY412 ARG413 ASP414 ASN415 ALA416 ARG417 THR418 PRO419 TYR420 GLN421 TRP422 ASP423 ASN424 SER425 GLU426 ASN427 ALA428 GLY429 PHE430 THR431 THR432 GLY433 THR434 PRO435 TRP436 LEU437 LYS438 VAL439 ASN440 PRO441 ARG442 TYR443 THR444 GLU445 ILE446 ASN447 ASN448 GLU449 GLU450 ALA451 LEU452 LYS453 ASN454 PRO455 ASP456 SER457 ILE458 PHE459 TYR460 TYR461 TYR462 GLN463 ASN464 LEU465 ILE466 LYS467 LEU468 ARG469 LYS470 THR471 THR472 GLU473 ILE474 ILE475 THR476 THR477 GLY478 ASN479 TYR480 ARG481 LEU482 LEU483 LEU484 PRO485 LYS486 ASP487 GLU488 ALA489 ILE490 PHE491 ALA492 TYR493 GLU494 ARG495 TYR496 THR497 GLU498 ASN499 GLU500 LYS501 LEU502 VAL503 VAL504 LEU505 CYS506 ASN507 PHE508 THR509 GLU510 GLU511 GLU512 GLN513 VAL514 ILE515 SER516 ASP517 GLU518 THR519 ILE520 LEU521 ASN522 GLU523 ILE524 GLN525 LYS526 GLY527 SER528 VAL529 LEU530 VAL531 ASN532 ASN533 VAL534 PRO535 ASN536 ILE537 ILE538 GLU539 GLY540 THR541 LEU542 ARG543 PRO544 TYR545 GLU546 ALA547 ILE548 VAL549 TYR550 GLN551 ILE552 LYS553 GLY554 ALA555
Unit 2 GLU3 LYS4 ASP5 TRP6 TRP7 LYS8 LYS9 SER10 VAL11 VAL12 TYR13 GLN14 ILE15 TYR16 PRO17 LYS18 SER19 PHE20 ASN21 ASP22 SER23 ASN24 GLY25 ASP26 GLY27 VAL28 GLY29 ASP30 ILE31 GLN32 GLY33 ILE34 ILE35 GLU36 LYS37 LEU38 ASP39 TYR40 LEU41 LYS42 GLU43 LEU44 GLY45 VAL46 ASP47 VAL48 ILE49 TRP50 LEU51 SER52 PRO53 VAL54 TYR55 ASP56 SER57 PRO58 GLN59 ASP60 ASP61 ASN62 GLY63 TYR64 ASP65 ILE66 ARG67 ASP68 TYR69 GLN70 LYS71 ILE72 TYR73 GLU74 GLU75 TYR76 GLY77 ASP78 MET79 ALA80 THR81 PHE82 ASP83 GLN84 LEU85 LEU86 GLN87 GLY88 LEU89 HIS90 ASP91 ARG92 ASP93 MET94 LYS95 LEU96 VAL97 MET98 ASP99 LEU100 VAL101 VAL102 ASN103 HIS104 THR105 SER106 ASP107 GLU108 HIS109 LYS110 TRP111 PHE112 GLU113 GLU114 SER115 ARG116 LYS117 SER118 LYS119 ASP120 ASN121 PRO122 TYR123 ARG124 ASP125 TYR126 TYR127 PHE128 TRP129 ARG130 GLU131 GLU132 ASN133 GLU134 ILE135 ASN136 ASN137 TRP138 GLY139 SER140 ILE141 PHE142 SER143 GLY144 PRO145 ALA146 TRP147 GLU148 LEU149 ASP150 GLU151 LYS152 THR153 GLY154 GLU155 TYR156 TYR157 LEU158 HIS159 LEU160 PHE161 SER162 LYS163 LYS164 GLN165 PRO166 ASP167 LEU168 ASN169 TRP170 GLU171 ASN172 PRO173 LYS174 LEU175 ARG176 GLN177 ASP178 VAL179 TYR180 ASN181 MET182 MET183 LYS184 PHE185 TRP186 LEU187 ASP188 LYS189 GLY190 ILE191 ASP192 GLY193 PHE194 ARG195 MET196 ASP197 VAL198 ILE199 ASN200 PHE201 ILE202 SER203 LYS204 ASN205 THR206 ASP207 PHE208 PRO209 ASP210 GLY211 PRO212 VAL213 PRO214 ASP215 GLY216 GLN217 ILE218 TYR219 GLY220 ASP221 ALA222 GLY223 ASN224 ASP225 PHE226 CYS227 ASN228 GLY229 PRO230 ARG231 ILE232 HIS233 GLU234 PHE235 LEU236 GLN237 GLU238 MET239 ASN240 GLN241 GLU242 VAL243 THR244 SER245 LYS246 TYR247 ASP248 VAL249 MET250 THR251 VAL252 GLY253 GLU254 MET255 PRO256 GLY257 ALA258 SER259 THR260 THR261 ASP262 ALA263 GLN264 ILE265 TYR266 THR267 ASN268 PRO269 ALA270 ASN271 ASN272 GLU273 VAL274 ASP275 MET276 ILE277 PHE278 THR279 PHE280 GLU281 HIS282 MET283 ASN284 LEU285 ASP286 SER287 ASP288 SER289 ASP290 ASN291 LYS292 TRP293 ASP294 LEU295 LYS296 PRO297 ILE298 TYR299 LEU300 PRO301 ASP302 LEU303 LYS304 GLU305 ASN306 MET307 SER308 GLU309 TRP310 GLN311 VAL312 ALA313 LEU314 GLN315 GLU316 ASN317 GLY318 TRP319 ASN320 SER321 LEU322 TYR323 TRP324 ASN325 ASN326 HIS327 ASP328 GLN329 PRO330 ARG331 ILE332 VAL333 SER334 ARG335 PHE336 GLY337 ASN338 ASP339 ASN340 ARG341 PHE342 ARG343 VAL344 ARG345 SER346 ALA347 LYS348 MET349 LEU350 ALA351 THR352 CYS353 LEU354 HIS355 MET356 MET357 LYS358 GLY359 THR360 PRO361 TYR362 ILE363 TYR364 GLN365 GLY366 GLU367 GLU368 ILE369 GLY370 MET371 THR372 ASN373 VAL374 HIS375 PHE376 GLU377 THR378 LEU379 ASP380 ASP381 TYR382 ARG383 ASP384 ILE385 GLU386 THR387 LEU388 ASN389 MET390 TYR391 LYS392 GLU393 ARG394 LYS395 GLU396 GLN397 GLY398 HIS399 SER400 HIS401 GLU402 SER403 ILE404 MET405 GLN406 SER407 ILE408 TYR409 THR410 LYS411 GLY412 ARG413 ASP414 ASN415 ALA416 ARG417 THR418 PRO419 TYR420 GLN421 TRP422 ASP423 ASN424 SER425 GLU426 ASN427 ALA428 GLY429 PHE430 THR431 THR432 GLY433 THR434 PRO435 TRP436 LEU437 LYS438 VAL439 ASN440 PRO441 ARG442 TYR443 THR444 GLU445 ILE446 ASN447 ASN448 GLU449 GLU450 ALA451 LEU452 LYS453 ASN454 PRO455 ASP456 SER457 ILE458 PHE459 TYR460 TYR461 TYR462 GLN463 ASN464 LEU465 ILE466 LYS467 LEU468 ARG469 LYS470 THR471 THR472 GLU473 ILE474 ILE475 THR476 THR477 GLY478 ASN479 TYR480 ARG481 LEU482 LEU483 LEU484 PRO485 LYS486 ASP487 GLU488 ALA489 ILE490 PHE491 ALA492 TYR493 GLU494 ARG495 TYR496 THR497 GLU498 ASN499 GLU500 LYS501 LEU502 VAL503 VAL504 LEU505 CYS506 ASN507 PHE508 THR509 GLU510 GLU511 GLU512 GLN513 VAL514 ILE515 SER516 ASP517 GLU518 THR519 ILE520 LEU521 ASN522 GLU523 ILE524 GLN525 LYS526 GLY527 SER528 VAL529 LEU530 VAL531 ASN532 ASN533 VAL534 PRO535 ASN536 ILE537 ILE538 GLU539 GLY540 THR541 LEU542 ARG543 PRO544 TYR545 GLU546 ALA547 ILE548 VAL549 TYR550 GLN551 ILE552 LYS553 GLY554
Unit 3 LYS4 ASP5 TRP6 TRP7 LYS8 LYS9 SER10 VAL11 VAL12 TYR13 GLN14 ILE15 TYR16 PRO17 LYS18 SER19 PHE20 ASN21 ASP22 SER23 ASN24 GLY25 ASP26 GLY27 VAL28 GLY29 ASP30 ILE31 GLN32 GLY33 ILE34 ILE35 GLU36 LYS37 LEU38 ASP39 TYR40 LEU41 LYS42 GLU43 LEU44 GLY45 VAL46 ASP47 VAL48 ILE49 TRP50 LEU51 SER52 PRO53 VAL54 TYR55 ASP56 SER57 PRO58 GLN59 ASP60 ASP61 ASN62 GLY63 TYR64 ASP65 ILE66 ARG67 ASP68 TYR69 GLN70 LYS71 ILE72 TYR73 GLU74 GLU75 TYR76 GLY77 ASP78 MET79 ALA80 THR81 PHE82 ASP83 GLN84 LEU85 LEU86 GLN87 GLY88 LEU89 HIS90 ASP91 ARG92 ASP93 MET94 LYS95 LEU96 VAL97 MET98 ASP99 LEU100 VAL101 VAL102 ASN103 HIS104 THR105 SER106 ASP107 GLU108 HIS109 LYS110 TRP111 PHE112 GLU113 GLU114 SER115 ARG116 LYS117 SER118 LYS119 ASP120 ASN121 PRO122 TYR123 ARG124 ASP125 TYR126 TYR127 PHE128 TRP129 ARG130 GLU131 GLU132 ASN133 GLU134 ILE135 ASN136 ASN137 TRP138 GLY139 SER140 ILE141 PHE142 SER143 GLY144 PRO145 ALA146 TRP147 GLU148 LEU149 ASP150 GLU151 LYS152 THR153 GLY154 GLU155 TYR156 TYR157 LEU158 HIS159 LEU160 PHE161 SER162 LYS163 LYS164 GLN165 PRO166 ASP167 LEU168 ASN169 TRP170 GLU171 ASN172 PRO173 LYS174 LEU175 ARG176 GLN177 ASP178 VAL179 TYR180 ASN181 MET182 MET183 LYS184 PHE185 TRP186 LEU187 ASP188 LYS189 GLY190 ILE191 ASP192 GLY193 PHE194 ARG195 MET196 ASP197 VAL198 ILE199 ASN200 PHE201 ILE202 SER203 LYS204 ASN205 THR206 ASP207 PHE208 PRO209 ASP210 GLY211 PRO212 VAL213 PRO214 ASP215 GLY216 GLN217 ILE218 TYR219 GLY220 ASP221 ALA222 GLY223 ASN224 ASP225 PHE226 CYS227 ASN228 GLY229 PRO230 ARG231 ILE232 HIS233 GLU234 PHE235 LEU236 GLN237 GLU238 MET239 ASN240 GLN241 GLU242 VAL243 THR244 SER245 LYS246 TYR247 ASP248 VAL249 MET250 THR251 VAL252 GLY253 GLU254 MET255 PRO256 GLY257 ALA258 SER259 THR260 THR261 ASP262 ALA263 GLN264 ILE265 TYR266 THR267 ASN268 PRO269 ALA270 ASN271 ASN272 GLU273 VAL274 ASP275 MET276 ILE277 PHE278 THR279 PHE280 GLU281 HIS282 MET283 ASN284 LEU285 ASP286 SER287 ASP288 SER289 ASP290 ASN291 LYS292 TRP293 ASP294 LEU295 LYS296 PRO297 ILE298 TYR299 LEU300 PRO301 ASP302 LEU303 LYS304 GLU305 ASN306 MET307 SER308 GLU309 TRP310 GLN311 VAL312 ALA313 LEU314 GLN315 GLU316 ASN317 GLY318 TRP319 ASN320 SER321 LEU322 TYR323 TRP324 ASN325 ASN326 HIS327 ASP328 GLN329 PRO330 ARG331 ILE332 VAL333 SER334 ARG335 PHE336 GLY337 ASN338 ASP339 ASN340 ARG341 PHE342 ARG343 VAL344 ARG345 SER346 ALA347 LYS348 MET349 LEU350 ALA351 THR352 CYS353 LEU354 HIS355 MET356 MET357 LYS358 GLY359 THR360 PRO361 TYR362 ILE363 TYR364 GLN365 GLY366 GLU367 GLU368 ILE369 GLY370 MET371 THR372 ASN373 VAL374 HIS375 PHE376 GLU377 THR378 LEU379 ASP380 ASP381 TYR382 ARG383 ASP384 ILE385 GLU386 THR387 LEU388 ASN389 MET390 TYR391 LYS392 GLU393 ARG394 LYS395 GLU396 GLN397 GLY398 HIS399 SER400 HIS401 GLU402 SER403 ILE404 MET405 GLN406 SER407 ILE408 TYR409 THR410 LYS411 GLY412 ARG413 ASP414 ASN415 ALA416 ARG417 THR418 PRO419 TYR420 GLN421 TRP422 ASP423 ASN424 SER425 GLU426 ASN427 ALA428 GLY429 PHE430 THR431 THR432 GLY433 THR434 PRO435 TRP436 LEU437 LYS438 VAL439 ASN440 PRO441 ARG442 TYR443 THR444 GLU445 ILE446 ASN447 ASN448 GLU449 GLU450 ALA451 LEU452 LYS453 ASN454 PRO455 ASP456 SER457 ILE458 PHE459 TYR460 TYR461 TYR462 GLN463 ASN464 LEU465 ILE466 LYS467 LEU468 ARG469 LYS470 THR471 THR472 GLU473 ILE474 ILE475 THR476 THR477 GLY478 ASN479 TYR480 ARG481 LEU482 LEU483 LEU484 PRO485 LYS486 ASP487 GLU488 ALA489 ILE490 PHE491 ALA492 TYR493 GLU494 ARG495 TYR496 THR497 GLU498 ASN499 GLU500 LYS501 LEU502 VAL503 VAL504 LEU505 CYS506 ASN507 PHE508 THR509 GLU510 GLU511 GLU512 GLN513 VAL514 ILE515 SER516 ASP517 GLU518 THR519 ILE520 LEU521 ASN522 GLU523 ILE524 GLN525 LYS526 GLY527 SER528 VAL529 LEU530 VAL531 ASN532 ASN533 VAL534 PRO535 ASN536 ILE537 ILE538 GLU539 GLY540 THR541 LEU542 ARG543 PRO544 TYR545 GLU546 ALA547 ILE548 VAL549 TYR550 GLN551 ILE552 LYS553 GLY554

Ligands
Unit 4 BGC601 CL602 BTB603
Unit 5 BGC601 CL602 BTB603
Unit 6 BGC601 CL602 CL603 BTB604

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany