5DO4 - Sequence, Chains, Asymmetric and Biological Units

• Title: THROMBIN-RNA APTAMER COMPLEX
• Keywords: THROMBIN-RNA APTAMER, PHOSPHORODITHIOATE RNA, PS2-RNA, PS2 L HYDROLASE-RNA COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5DO4	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	THROMBIN LIGHT CHAIN	L	32	249	0
2	Protein	THROMBIN HEAVY CHAIN	H	256	2063	0
3	RNA		A	25	311	224
4	Ligand	THROMBIN HEAVY CHAIN	H	9	0	73
5	Ligand	RNA (25-MER)	A	2	0	9
6	Water			163	0	163
total				487	2623	469

Proteins

Unit 1

GLY 5 GLU 6 ALA 7 ASP 8 CYS 9 GLY 10 LEU 11 ARG 12 PRO 13 LEU 14 PHE 15 GLU 16 LYS 17 LYS 18 SER 19 LEU 20 GLU 21 ASP 22 LYS 23 THR 24 GLU 25 ARG 26 GLU 27 LEU 28 LEU 29 GLU 30 SER 31 TYR 32 ILE 33 ASP 34 GLY 35 ARG 36

Unit 2

ILE 1 VAL 2 GLU 3 GLY 4 SER 5 ASP 6 ALA 7 GLU 8 ILE 9 GLY 10 MET 11 SER 12 PRO 13 TRP 14 GLN 15 VAL 16 MET 17 LEU 18 PHE 19 ARG 20 LYS 21 SER 22 PRO 23 GLN 24 GLU 25 LEU 26 LEU 27 CYS 28 GLY 29 ALA 30 SER 31 LEU 32 ILE 33 SER 34 ASP 35 ARG 36 TRP 37 VAL 38 LEU 39 THR 40 ALA 41 ALA 42 HIS 43 CYS 44 LEU 45 LEU 46 TYR 47 PRO 48 PRO 49 TRP 50 ASP 51 LYS 52 ASN 53 PHE 54 THR 55 GLU 56 ASN 57 ASP 58 LEU 59 LEU 60 VAL 61 ARG 62 ILE 63 GLY 64 LYS 65 HIS 66 SER 67 ARG 68 THR 69 ARG 70 TYR 71 GLU 72 ARG 73 ASN 74 ILE 75 GLU 76 LYS 77 ILE 78 SER 79 MET 80 LEU 81 GLU 82 LYS 83 ILE 84 TYR 85 ILE 86 HIS 87 PRO 88 ARG 89 TYR 90 ASN 91 TRP 92 ARG 93 GLU 94 ASN 95 LEU 96 ASP 97 ARG 98 ASP 99 ILE 100 ALA 101 LEU 102 MET 103 LYS 104 LEU 105 LYS 106 LYS 107 PRO 108 VAL 109 ALA 110 PHE 111 SER 112 ASP 113 TYR 114 ILE 115 HIS 116 PRO 117 VAL 118 CYS 119 LEU 120 PRO 121 ASP 122 ARG 123 GLU 124 THR 125 ALA 126 ALA 127 SER 128 LEU 129 LEU 130 GLN 131 ALA 132 GLY 133 TYR 134 LYS 135 GLY 136 ARG 137 VAL 138 THR 139 GLY 140 TRP 141 GLY 142 ASN 143 LEU 144 LYS 145 GLU 146 THR 147 ALA 150 ASN 151 VAL 152 GLY 153 LYS 154 GLY 155 GLN 156 PRO 157 SER 158 VAL 159 LEU 160 GLN 161 VAL 162 VAL 163 ASN 164 LEU 165 PRO 166 ILE 167 VAL 168 GLU 169 ARG 170 PRO 171 VAL 172 CYS 173 LYS 174 ASP 175 SER 176 THR 177 ARG 178 ILE 179 ARG 180 ILE 181 THR 182 ASP 183 ASN 184 MET 185 PHE 186 CYS 187 ALA 188 GLY 189 TYR 190 LYS 191 PRO 192 ASP 193 GLU 194 GLY 195 LYS 196 ARG 197 GLY 198 ASP 199 ALA 200 CYS 201 GLU 202 GLY 203 ASP 204 SER 205 GLY 206 GLY 207 PRO 208 PHE 209 VAL 210 MET 211 LYS 212 SER 213 PRO 214 PHE 215 ASN 216 ASN 217 ARG 218 TRP 219 TYR 220 GLN 221 MET 222 GLY 223 ILE 224 VAL 225 SER 226 TRP 227 GLY 228 GLU 229 GLY 230 CYS 231 ASP 232 ARG 233 ASP 234 GLY 235 LYS 236 TYR 237 GLY 238 PHE 239 TYR 240 THR 241 HIS 242 VAL 243 PHE 244 ARG 245 LEU 246 LYS 247 LYS 248 TRP 249 ILE 250 GLN 251 LYS 252 VAL 253 ILE 254 ASP 255 GLN 256 PHE 257 GLY 258

Nucleic acids

Unit 3

G 1 G 2 G 3 A 4 A 5 CFZ 6 A 7 A 8 A 9 G 10 CFZ 11 UMS 12 G 13 A 14 A 15 G 16 UFT 17 ADS 18 CFZ 19 UFT 20 UMS 21 A 22 CFZ 23 CFZ 24 CFZ 25

Ligands

Unit 4	0G6 301 NAG 302 EDO 303 EDO 304 EDO 305 EDO 306 GOL 307 GOL 308 CA 309
Unit 5	MRD 101 MG 102