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Sequence, Chains, Asymmetric and Biological Units

Title COMPLEX STRUCTURE OF MERS-RBD BOUND WITH 4C2 ANTIBODY
Keywords RECEPTOR-BINDING DOMAIN OF MERS-COV SPIKE, 4C2 ANTIBODY, NEURALIZATION, RECEPTOR-BINDING BLOCKING., VIRAL PROTEIN-IM SYSTEM COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5DO2     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   S PROTEIN  A 208 1608 0
2  Protein   4C2 HEAVY CHAIN  H 215 1621 0
3  Protein   4C2 LIGHT CHAIN  L 214 1663 0
4  Protein   S PROTEIN  B 208 1608 0
5  Protein   4C2 HEAVY CHAIN  C 215 1621 0
6  Protein   4C2 LIGHT CHAIN  D 214 1663 0
7  Ligand   S PROTEIN  A 1 0 14
8 Water     139 0 139
total       1414 9784 153
Proteins
Unit 1 VAL381 GLU382 CYS383 ASP384 PHE385 SER386 PRO387 LEU388 LEU389 SER390 GLY391 THR392 PRO393 PRO394 GLN395 VAL396 TYR397 ASN398 PHE399 LYS400 ARG401 LEU402 VAL403 PHE404 THR405 ASN406 CYS407 ASN408 TYR409 ASN410 LEU411 THR412 LYS413 LEU414 LEU415 SER416 LEU417 PHE418 SER419 VAL420 ASN421 ASP422 PHE423 THR424 CYS425 SER426 GLN427 ILE428 SER429 PRO430 ALA431 ALA432 ILE433 ALA434 SER435 ASN436 CYS437 TYR438 SER439 SER440 LEU441 ILE442 LEU443 ASP444 TYR445 PHE446 SER447 TYR448 PRO449 LEU450 SER451 MET452 LYS453 SER454 ASP455 LEU456 SER457 VAL458 SER459 SER460 ALA461 GLY462 PRO463 ILE464 SER465 GLN466 PHE467 ASN468 TYR469 LYS470 GLN471 SER472 PHE473 SER474 ASN475 PRO476 THR477 CYS478 LEU479 ILE480 LEU481 ALA482 THR483 VAL484 PRO485 HIS486 ASN487 LEU488 THR489 THR490 ILE491 THR492 LYS493 PRO494 LEU495 LYS496 TYR497 SER498 TYR499 ILE500 ASN501 LYS502 CYS503 SER504 ARG505 LEU506 LEU507 SER508 ASP509 ASP510 ARG511 THR512 GLU513 VAL514 PRO515 GLN516 LEU517 VAL518 ASN519 ALA520 ASN521 GLN522 TYR523 SER524 PRO525 CYS526 VAL527 SER528 ILE529 VAL530 PRO531 SER532 THR533 VAL534 TRP535 GLU536 ASP537 GLY538 ASP539 TYR540 TYR541 ARG542 LYS543 GLN544 LEU545 SER546 PRO547 LEU548 GLU549 GLY550 GLY551 GLY552 TRP553 LEU554 VAL555 ALA556 SER557 GLY558 SER559 THR560 VAL561 ALA562 MET563 THR564 GLU565 GLN566 LEU567 GLN568 MET569 GLY570 PHE571 GLY572 ILE573 THR574 VAL575 GLN576 TYR577 GLY578 THR579 ASP580 THR581 ASN582 SER583 VAL584 CYS585 PRO586 LYS587 LEU588
Unit 2 ASP1 VAL2 LYS3 LEU4 VAL5 GLU6 SER7 GLY8 GLY9 GLY10 LEU11 VAL12 LYS13 PRO14 GLY15 GLY16 SER17 LEU18 LYS19 LEU20 SER21 CYS22 ALA23 ALA24 SER25 GLY26 PHE27 THR28 PHE29 SER30 SER31 TYR32 THR33 MET34 SER35 TRP36 VAL37 ARG38 GLN39 THR40 PRO41 GLU42 LYS43 ARG44 LEU45 GLU46 TRP47 VAL48 ALA49 THR50 ILE51 SER52 SER53 GLY54 GLY55 SER56 TYR57 THR58 TYR59 TYR60 PRO61 ASP62 SER63 VAL64 LYS65 GLY66 ARG67 PHE68 THR69 ILE70 SER71 ARG72 ASP73 ASN74 ALA75 LYS76 ASN77 THR78 LEU79 TYR80 LEU81 GLN82 MET83 SER84 SER85 LEU86 LYS87 SER88 GLU89 ASP90 THR91 ALA92 MET93 TYR94 TYR95 CYS96 THR97 ARG98 ASP99 GLY100 ASN101 ASP102 TYR103 ASP104 TYR105 TRP106 GLY107 GLN108 GLY109 THR110 THR111 LEU112 THR113 VAL114 SER115 SER116 ALA117 LYS118 THR119 THR120 PRO121 PRO122 SER123 VAL124 TYR125 PRO126 LEU127 ALA128 PRO129 GLY130 SER131 ASN136 SER137 MET138 VAL139 THR140 LEU141 GLY142 CYS143 LEU144 VAL145 LYS146 GLY147 TYR148 PHE149 PRO150 GLU151 PRO152 VAL153 THR154 VAL155 THR156 TRP157 ASN158 SER159 GLY160 SER161 LEU162 SER163 SER164 GLY165 VAL166 HIS167 THR168 PHE169 PRO170 ALA171 VAL172 LEU173 GLN174 SER175 ASP176 LEU177 TYR178 THR179 LEU180 SER181 SER182 SER183 VAL184 THR185 VAL186 PRO187 SER188 SER189 THR190 TRP191 PRO192 SER193 GLU194 THR195 VAL196 THR197 CYS198 ASN199 VAL200 ALA201 HIS202 PRO203 ALA204 SER205 SER206 THR207 LYS208 VAL209 ASP210 LYS211 LYS212 ILE213 VAL214 PRO215 ARG216 ASP217 CYS218 GLY219
Unit 3 ASP1 ILE2 GLN3 MET4 THR5 GLN6 THR7 THR8 SER9 SER10 LEU11 SER12 ALA13 SER14 LEU15 GLY16 ASP17 ARG18 VAL19 THR20 ILE21 SER22 CYS23 ARG24 ALA25 SER26 GLN27 ASP28 ILE29 SER30 ASN31 TYR32 LEU33 ASN34 TRP35 TYR36 GLN37 GLN38 LYS39 PRO40 ASP41 GLY42 THR43 VAL44 LYS45 LEU46 LEU47 ILE48 TYR49 TYR50 THR51 SER52 ARG53 LEU54 HIS55 SER56 GLY57 VAL58 PRO59 SER60 ARG61 PHE62 SER63 GLY64 SER65 GLY66 SER67 GLY68 THR69 ASP70 TYR71 SER72 LEU73 THR74 ILE75 SER76 ASN77 LEU78 GLU79 GLN80 GLU81 ASP82 ILE83 ALA84 THR85 TYR86 PHE87 CYS88 GLN89 GLN90 GLY91 ASN92 THR93 LEU94 PRO95 ARG96 THR97 PHE98 GLY99 GLY100 GLY101 THR102 LYS103 LEU104 GLU105 ILE106 LYS107 ARG108 ALA109 ASP110 ALA111 ALA112 PRO113 THR114 VAL115 SER116 ILE117 PHE118 PRO119 PRO120 SER121 SER122 GLU123 GLN124 LEU125 THR126 SER127 GLY128 GLY129 ALA130 SER131 VAL132 VAL133 CYS134 PHE135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 LYS142 ASP143 ILE144 ASN145 VAL146 LYS147 TRP148 LYS149 ILE150 ASP151 GLY152 SER153 GLU154 ARG155 GLN156 ASN157 GLY158 VAL159 LEU160 ASN161 SER162 TRP163 THR164 ASP165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 MET175 SER176 SER177 THR178 LEU179 THR180 LEU181 THR182 LYS183 ASP184 GLU185 TYR186 GLU187 ARG188 HIS189 ASN190 SER191 TYR192 THR193 CYS194 GLU195 ALA196 THR197 HIS198 LYS199 THR200 SER201 THR202 SER203 PRO204 ILE205 VAL206 LYS207 SER208 PHE209 ASN210 ARG211 ASN212 GLU213 CYS214
Unit 4 VAL381 GLU382 CYS383 ASP384 PHE385 SER386 PRO387 LEU388 LEU389 SER390 GLY391 THR392 PRO393 PRO394 GLN395 VAL396 TYR397 ASN398 PHE399 LYS400 ARG401 LEU402 VAL403 PHE404 THR405 ASN406 CYS407 ASN408 TYR409 ASN410 LEU411 THR412 LYS413 LEU414 LEU415 SER416 LEU417 PHE418 SER419 VAL420 ASN421 ASP422 PHE423 THR424 CYS425 SER426 GLN427 ILE428 SER429 PRO430 ALA431 ALA432 ILE433 ALA434 SER435 ASN436 CYS437 TYR438 SER439 SER440 LEU441 ILE442 LEU443 ASP444 TYR445 PHE446 SER447 TYR448 PRO449 LEU450 SER451 MET452 LYS453 SER454 ASP455 LEU456 SER457 VAL458 SER459 SER460 ALA461 GLY462 PRO463 ILE464 SER465 GLN466 PHE467 ASN468 TYR469 LYS470 GLN471 SER472 PHE473 SER474 ASN475 PRO476 THR477 CYS478 LEU479 ILE480 LEU481 ALA482 THR483 VAL484 PRO485 HIS486 ASN487 LEU488 THR489 THR490 ILE491 THR492 LYS493 PRO494 LEU495 LYS496 TYR497 SER498 TYR499 ILE500 ASN501 LYS502 CYS503 SER504 ARG505 LEU506 LEU507 SER508 ASP509 ASP510 ARG511 THR512 GLU513 VAL514 PRO515 GLN516 LEU517 VAL518 ASN519 ALA520 ASN521 GLN522 TYR523 SER524 PRO525 CYS526 VAL527 SER528 ILE529 VAL530 PRO531 SER532 THR533 VAL534 TRP535 GLU536 ASP537 GLY538 ASP539 TYR540 TYR541 ARG542 LYS543 GLN544 LEU545 SER546 PRO547 LEU548 GLU549 GLY550 GLY551 GLY552 TRP553 LEU554 VAL555 ALA556 SER557 GLY558 SER559 THR560 VAL561 ALA562 MET563 THR564 GLU565 GLN566 LEU567 GLN568 MET569 GLY570 PHE571 GLY572 ILE573 THR574 VAL575 GLN576 TYR577 GLY578 THR579 ASP580 THR581 ASN582 SER583 VAL584 CYS585 PRO586 LYS587 LEU588
Unit 5 ASP1 VAL2 LYS3 LEU4 VAL5 GLU6 SER7 GLY8 GLY9 GLY10 LEU11 VAL12 LYS13 PRO14 GLY15 GLY16 SER17 LEU18 LYS19 LEU20 SER21 CYS22 ALA23 ALA24 SER25 GLY26 PHE27 THR28 PHE29 SER30 SER31 TYR32 THR33 MET34 SER35 TRP36 VAL37 ARG38 GLN39 THR40 PRO41 GLU42 LYS43 ARG44 LEU45 GLU46 TRP47 VAL48 ALA49 THR50 ILE51 SER52 SER53 GLY54 GLY55 SER56 TYR57 THR58 TYR59 TYR60 PRO61 ASP62 SER63 VAL64 LYS65 GLY66 ARG67 PHE68 THR69 ILE70 SER71 ARG72 ASP73 ASN74 ALA75 LYS76 ASN77 THR78 LEU79 TYR80 LEU81 GLN82 MET83 SER84 SER85 LEU86 LYS87 SER88 GLU89 ASP90 THR91 ALA92 MET93 TYR94 TYR95 CYS96 THR97 ARG98 ASP99 GLY100 ASN101 ASP102 TYR103 ASP104 TYR105 TRP106 GLY107 GLN108 GLY109 THR110 THR111 LEU112 THR113 VAL114 SER115 SER116 ALA117 LYS118 THR119 THR120 PRO121 PRO122 SER123 VAL124 TYR125 PRO126 LEU127 ALA128 PRO129 GLY130 SER131 ASN136 SER137 MET138 VAL139 THR140 LEU141 GLY142 CYS143 LEU144 VAL145 LYS146 GLY147 TYR148 PHE149 PRO150 GLU151 PRO152 VAL153 THR154 VAL155 THR156 TRP157 ASN158 SER159 GLY160 SER161 LEU162 SER163 SER164 GLY165 VAL166 HIS167 THR168 PHE169 PRO170 ALA171 VAL172 LEU173 GLN174 SER175 ASP176 LEU177 TYR178 THR179 LEU180 SER181 SER182 SER183 VAL184 THR185 VAL186 PRO187 SER188 SER189 THR190 TRP191 PRO192 SER193 GLU194 THR195 VAL196 THR197 CYS198 ASN199 VAL200 ALA201 HIS202 PRO203 ALA204 SER205 SER206 THR207 LYS208 VAL209 ASP210 LYS211 LYS212 ILE213 VAL214 PRO215 ARG216 ASP217 CYS218 GLY219
Unit 6 ASP1 ILE2 GLN3 MET4 THR5 GLN6 THR7 THR8 SER9 SER10 LEU11 SER12 ALA13 SER14 LEU15 GLY16 ASP17 ARG18 VAL19 THR20 ILE21 SER22 CYS23 ARG24 ALA25 SER26 GLN27 ASP28 ILE29 SER30 ASN31 TYR32 LEU33 ASN34 TRP35 TYR36 GLN37 GLN38 LYS39 PRO40 ASP41 GLY42 THR43 VAL44 LYS45 LEU46 LEU47 ILE48 TYR49 TYR50 THR51 SER52 ARG53 LEU54 HIS55 SER56 GLY57 VAL58 PRO59 SER60 ARG61 PHE62 SER63 GLY64 SER65 GLY66 SER67 GLY68 THR69 ASP70 TYR71 SER72 LEU73 THR74 ILE75 SER76 ASN77 LEU78 GLU79 GLN80 GLU81 ASP82 ILE83 ALA84 THR85 TYR86 PHE87 CYS88 GLN89 GLN90 GLY91 ASN92 THR93 LEU94 PRO95 ARG96 THR97 PHE98 GLY99 GLY100 GLY101 THR102 LYS103 LEU104 GLU105 ILE106 LYS107 ARG108 ALA109 ASP110 ALA111 ALA112 PRO113 THR114 VAL115 SER116 ILE117 PHE118 PRO119 PRO120 SER121 SER122 GLU123 GLN124 LEU125 THR126 SER127 GLY128 GLY129 ALA130 SER131 VAL132 VAL133 CYS134 PHE135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 LYS142 ASP143 ILE144 ASN145 VAL146 LYS147 TRP148 LYS149 ILE150 ASP151 GLY152 SER153 GLU154 ARG155 GLN156 ASN157 GLY158 VAL159 LEU160 ASN161 SER162 TRP163 THR164 ASP165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 MET175 SER176 SER177 THR178 LEU179 THR180 LEU181 THR182 LYS183 ASP184 GLU185 TYR186 GLU187 ARG188 HIS189 ASN190 SER191 TYR192 THR193 CYS194 GLU195 ALA196 THR197 HIS198 LYS199 THR200 SER201 THR202 SER203 PRO204 ILE205 VAL206 LYS207 SER208 PHE209 ASN210 ARG211 ASN212 GLU213 CYS214
Ligands
Unit 7 NAG701
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany