5DNY - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURE OF THE ATPRS-MRE11/RAD50-DNA COMPLEX
• Keywords: NUCLEASE, RECOMBINATION-DNA COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5DNY	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	DNA DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11	A	352	2936	0
2	Protein	DNA DOUBLE-STRAND BREAK REPAIR RAD50 ATPASE,DNA D STRAND BREAK REPAIR RAD50 ATPASE	B	359	2877	0
3	Protein	DNA DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11	C	351	2919	0
4	Protein	DNA DOUBLE-STRAND BREAK REPAIR RAD50 ATPASE,DNA D STRAND BREAK REPAIR RAD50 ATPASE	D	358	2874	0
5	Other macromolecule	DNA (27-MER)	E	25	517	0
6	Other macromolecule	DNA (27-MER)	F	23	467	0
7	Ligand	DNA DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11	A	2	0	2
8	Ligand	DNA DOUBLE-STRAND BREAK REPAIR RAD50 ATPASE,DNA D STRAND BREAK REPAIR RAD50 ATPASE	B	1	0	31
9	Ligand	DNA DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11	C	2	0	2
10	Ligand	DNA DOUBLE-STRAND BREAK REPAIR RAD50 ATPASE,DNA D STRAND BREAK REPAIR RAD50 ATPASE	D	1	0	31
11	Water			1	0	2
total				1475	12590	68

Proteins

Unit 1	HIS 0 MET 1 MET 2 PHE 3 VAL 4 HIS 5 ILE 6 ALA 7 ASP 8 ASN 9 HIS 10 LEU 11 GLY 12 TYR 13 ARG 14 GLN 15 TYR 16 ASN 17 LEU 18 ASP 19 ASP 20 ARG 21 GLU 22 LYS 23 ASP 24 ILE 25 TYR 26 ASP 27 SER 28 PHE 29 LYS 30 LEU 31 CYS 32 ILE 33 LYS 34 LYS 35 ILE 36 LEU 37 GLU 38 ILE 39 LYS 40 PRO 41 ASP 42 VAL 43 VAL 44 LEU 45 HIS 46 SER 47 GLY 48 ASP 49 LEU 50 PHE 51 ASN 52 ASP 53 LEU 54 ARG 55 PRO 56 PRO 57 VAL 58 LYS 59 ALA 60 LEU 61 ARG 62 ILE 63 ALA 64 MET 65 GLN 66 ALA 67 PHE 68 LYS 69 LYS 70 LEU 71 HIS 72 GLU 73 ASN 74 ASN 75 ILE 76 LYS 77 VAL 78 TYR 79 ILE 80 VAL 81 ALA 82 GLY 83 ASN 84 HIS 85 GLU 86 MET 87 PRO 88 ARG 89 ARG 90 LEU 91 GLY 92 GLU 93 GLU 94 SER 95 PRO 96 LEU 97 ALA 98 LEU 99 LEU 100 LYS 101 ASP 102 TYR 103 VAL 104 LYS 105 ILE 106 LEU 107 ASP 108 GLY 109 LYS 110 ASP 111 VAL 112 ILE 113 ASN 114 VAL 115 ASN 116 GLY 117 GLU 118 GLU 119 ILE 120 PHE 121 ILE 122 CYS 123 GLY 124 THR 125 TYR 126 TYR 127 HIS 128 LYS 129 LYS 130 SER 131 LYS 132 ARG 133 GLU 134 GLU 135 MET 136 LEU 137 ASP 138 LYS 139 LEU 140 LYS 141 ASN 142 PHE 143 GLU 144 SER 145 GLU 146 ALA 147 LYS 148 ASN 149 TYR 150 LYS 151 LYS 152 LYS 153 ILE 154 LEU 155 MET 156 LEU 157 HIS 158 GLN 159 GLY 160 ILE 161 ASN 162 PRO 163 TYR 164 ILE 165 PRO 166 LEU 167 ASP 168 TYR 169 GLU 170 LEU 171 GLU 172 HIS 173 PHE 174 ASP 175 LEU 176 PRO 177 LYS 178 PHE 179 SER 180 TYR 181 TYR 182 ALA 183 LEU 184 GLY 185 HIS 186 ILE 187 HIS 188 LYS 189 ARG 190 ILE 191 LEU 192 GLU 193 ARG 194 PHE 195 ASN 196 ASP 197 GLY 198 ILE 199 LEU 200 ALA 201 TYR 202 SER 203 GLY 204 SER 205 THR 206 GLU 207 ILE 208 ILE 209 TYR 210 ARG 211 ASN 212 GLU 213 TYR 214 GLU 215 ASP 216 TYR 217 LYS 218 LYS 219 GLU 220 GLY 221 LYS 222 GLY 223 PHE 224 TYR 225 LEU 226 VAL 227 ASP 228 PHE 229 SER 230 GLY 231 ASN 232 ASP 233 LEU 234 ASP 235 ILE 236 SER 237 ASP 238 ILE 239 GLU 240 LYS 241 ILE 242 ASP 243 ILE 244 GLU 245 CYS 246 ARG 247 GLU 248 PHE 249 VAL 250 GLU 251 VAL 252 ASN 253 ILE 254 LYS 255 ASP 256 LYS 257 LYS 258 SER 259 PHE 260 ASN 261 GLU 262 ALA 263 VAL 264 ASN 265 LYS 266 ILE 267 GLU 268 ARG 269 CYS 270 LYS 271 ASN 272 LYS 273 PRO 274 VAL 275 VAL 276 PHE 277 GLY 278 LYS 279 ILE 280 LYS 281 ARG 282 GLU 283 PHE 284 LYS 285 PRO 286 TRP 287 PHE 288 ASP 289 THR 290 LEU 291 LYS 292 ASP 293 LYS 294 ILE 295 LEU 296 ILE 297 ASN 298 LYS 299 ALA 300 ILE 301 ILE 302 VAL 303 ASP 304 ASP 305 ASN 320 ILE 321 LYS 322 GLU 323 LEU 324 LEU 325 VAL 326 ASP 327 TYR 328 ALA 329 ASN 330 ARG 331 GLN 332 GLY 333 ILE 334 ASP 335 GLY 336 ASP 337 LEU 338 VAL 339 LEU 340 SER 341 LEU 342 TYR 343 LYS 344 ALA 345 LEU 346 LEU 347 ASN 348 ASN 349 GLU 350 ASN 351 TRP 352 LYS 353 GLU 354 LEU 355 LEU 356 ASP 357 GLU 358 TYR 359 TYR 360 ASN 361 THR 362 LYS 363 PHE 364 ARG 365
Unit 2	MET 1 SER 2 MET 3 ILE 4 LEU 5 LYS 6 GLU 7 ILE 8 ARG 9 MET 10 ASN 11 ASN 12 PHE 13 LYS 14 SER 15 HIS 16 VAL 17 ASN 18 SER 19 ARG 20 ILE 21 LYS 22 PHE 23 GLU 24 LYS 25 GLY 26 ILE 27 VAL 28 ALA 29 ILE 30 ILE 31 GLY 32 GLU 33 ASN 34 GLY 35 SER 36 GLY 37 LYS 38 SER 39 SER 40 ILE 41 PHE 42 GLU 43 ALA 44 VAL 45 PHE 46 PHE 47 ALA 48 LEU 49 PHE 50 GLY 51 ALA 52 GLY 53 SER 54 ASN 55 PHE 56 ASN 57 TYR 58 ASP 59 THR 60 ILE 61 ILE 62 THR 63 LYS 64 GLY 65 LYS 66 LYS 67 SER 68 VAL 69 TYR 70 VAL 71 GLU 72 LEU 73 ASP 74 PHE 75 GLU 76 VAL 77 ASN 78 GLY 79 ASN 80 ASN 81 TYR 82 LYS 83 ILE 84 ILE 85 ARG 86 GLU 87 TYR 88 ASP 89 SER 90 GLY 91 ARG 92 GLY 93 GLY 94 ALA 95 LYS 96 LEU 97 TYR 98 LYS 99 ASN 100 GLY 101 LYS 102 PRO 103 TYR 104 ALA 105 THR 106 THR 107 ILE 108 SER 109 ALA 110 VAL 111 ASN 112 LYS 113 ALA 114 VAL 115 ASN 116 GLU 117 ILE 118 LEU 119 GLY 120 VAL 121 ASP 122 ARG 123 ASN 124 MET 125 PHE 126 LEU 127 ASN 128 SER 129 ILE 130 TYR 131 ILE 132 LYS 133 GLN 134 GLY 135 GLU 136 ILE 137 ALA 138 LYS 139 PHE 140 LEU 141 SER 142 LEU 143 LYS 144 PRO 145 SER 146 GLU 147 LYS 148 LEU 149 GLU 150 THR 151 VAL 152 ALA 153 LYS 154 LEU 155 LEU 156 GLY 157 ILE 158 ASP 159 GLU 160 PHE 161 GLU 162 LYS 163 CYS 164 TYR 165 GLN 166 LYS 167 MET 168 GLY 169 GLU 170 ILE 171 VAL 172 LYS 173 GLU 174 TYR 175 GLU 176 LYS 177 ARG 178 LEU 179 GLU 180 ARG 181 ILE 182 GLU 183 GLY 184 GLU 185 LYS 832 GLU 833 MET 834 SER 835 ASN 836 LEU 837 GLU 838 LYS 839 GLU 840 LYS 841 GLU 842 LYS 843 LEU 844 THR 845 LYS 846 PHE 847 VAL 848 GLU 849 TYR 850 LEU 851 ASP 852 LYS 853 VAL 854 ARG 855 ARG 856 ILE 857 PHE 858 GLY 859 ARG 860 ASN 861 GLY 862 PHE 863 GLN 864 ALA 865 TYR 866 LEU 867 ARG 868 GLU 869 LYS 870 TYR 871 VAL 872 PRO 873 LEU 874 ILE 875 GLN 876 LYS 877 TYR 878 LEU 879 ASN 880 GLU 881 ALA 882 PHE 883 SER 884 GLU 885 PHE 886 ASP 887 LEU 888 PRO 889 TYR 890 SER 891 PHE 892 VAL 893 GLU 894 LEU 895 THR 896 LYS 897 ASP 898 PHE 899 GLU 900 VAL 901 ARG 902 VAL 903 HIS 904 ALA 905 PRO 906 ASN 907 GLY 908 VAL 909 LEU 910 THR 911 ILE 912 ASP 913 ASN 914 LEU 915 SER 916 GLY 917 GLY 918 GLU 919 GLN 920 ILE 921 ALA 922 VAL 923 ALA 924 LEU 925 SER 926 LEU 927 ARG 928 LEU 929 ALA 930 ILE 931 ALA 932 ASN 933 ALA 934 LEU 935 ILE 936 GLY 937 ASN 938 ARG 939 VAL 940 GLU 941 CYS 942 ILE 943 ILE 944 LEU 945 ASP 946 GLU 947 PRO 948 THR 949 VAL 950 TYR 951 LEU 952 ASP 953 GLU 954 ASN 955 ARG 956 ARG 957 ALA 958 LYS 959 LEU 960 ALA 961 GLU 962 ILE 963 PHE 964 ARG 965 LYS 966 VAL 967 LYS 968 SER 969 ILE 970 PRO 971 GLN 972 MET 973 ILE 974 ILE 975 ILE 976 THR 977 HIS 978 HIS 979 ARG 980 GLU 981 LEU 982 GLU 983 ASP 984 VAL 985 ALA 986 ASP 987 VAL 988 ILE 989 ILE 990 ASN 991 VAL 992 LYS 993 LYS 994 ASP 995 GLY 996 ASN 997 VAL 998 SER 999 LYS 1000 VAL 1001 LYS 1002 ILE 1003 ASN 1004 GLY 1005
Unit 3	MET 1 MET 2 PHE 3 VAL 4 HIS 5 ILE 6 ALA 7 ASP 8 ASN 9 HIS 10 LEU 11 GLY 12 TYR 13 ARG 14 GLN 15 TYR 16 ASN 17 LEU 18 ASP 19 ASP 20 ARG 21 GLU 22 LYS 23 ASP 24 ILE 25 TYR 26 ASP 27 SER 28 PHE 29 LYS 30 LEU 31 CYS 32 ILE 33 LYS 34 LYS 35 ILE 36 LEU 37 GLU 38 ILE 39 LYS 40 PRO 41 ASP 42 VAL 43 VAL 44 LEU 45 HIS 46 SER 47 GLY 48 ASP 49 LEU 50 PHE 51 ASN 52 ASP 53 LEU 54 ARG 55 PRO 56 PRO 57 VAL 58 LYS 59 ALA 60 LEU 61 ARG 62 ILE 63 ALA 64 MET 65 GLN 66 ALA 67 PHE 68 LYS 69 LYS 70 LEU 71 HIS 72 GLU 73 ASN 74 ASN 75 ILE 76 LYS 77 VAL 78 TYR 79 ILE 80 VAL 81 ALA 82 GLY 83 ASN 84 HIS 85 GLU 86 MET 87 PRO 88 ARG 89 ARG 90 LEU 91 GLY 92 GLU 93 GLU 94 SER 95 PRO 96 LEU 97 ALA 98 LEU 99 LEU 100 LYS 101 ASP 102 TYR 103 VAL 104 LYS 105 ILE 106 LEU 107 ASP 108 GLY 109 LYS 110 ASP 111 VAL 112 ILE 113 ASN 114 VAL 115 ASN 116 GLY 117 GLU 118 GLU 119 ILE 120 PHE 121 ILE 122 CYS 123 GLY 124 THR 125 TYR 126 TYR 127 HIS 128 LYS 129 LYS 130 SER 131 LYS 132 ARG 133 GLU 134 GLU 135 MET 136 LEU 137 ASP 138 LYS 139 LEU 140 LYS 141 ASN 142 PHE 143 GLU 144 SER 145 GLU 146 ALA 147 LYS 148 ASN 149 TYR 150 LYS 151 LYS 152 LYS 153 ILE 154 LEU 155 MET 156 LEU 157 HIS 158 GLN 159 GLY 160 ILE 161 ASN 162 PRO 163 TYR 164 ILE 165 PRO 166 LEU 167 ASP 168 TYR 169 GLU 170 LEU 171 GLU 172 HIS 173 PHE 174 ASP 175 LEU 176 PRO 177 LYS 178 PHE 179 SER 180 TYR 181 TYR 182 ALA 183 LEU 184 GLY 185 HIS 186 ILE 187 HIS 188 LYS 189 ARG 190 ILE 191 LEU 192 GLU 193 ARG 194 PHE 195 ASN 196 ASP 197 GLY 198 ILE 199 LEU 200 ALA 201 TYR 202 SER 203 GLY 204 SER 205 THR 206 GLU 207 ILE 208 ILE 209 TYR 210 ARG 211 ASN 212 GLU 213 TYR 214 GLU 215 ASP 216 TYR 217 LYS 218 LYS 219 GLU 220 GLY 221 LYS 222 GLY 223 PHE 224 TYR 225 LEU 226 VAL 227 ASP 228 PHE 229 SER 230 GLY 231 ASN 232 ASP 233 LEU 234 ASP 235 ILE 236 SER 237 ASP 238 ILE 239 GLU 240 LYS 241 ILE 242 ASP 243 ILE 244 GLU 245 CYS 246 ARG 247 GLU 248 PHE 249 VAL 250 GLU 251 VAL 252 ASN 253 ILE 254 LYS 255 ASP 256 LYS 257 LYS 258 SER 259 PHE 260 ASN 261 GLU 262 ALA 263 VAL 264 ASN 265 LYS 266 ILE 267 GLU 268 ARG 269 CYS 270 LYS 271 ASN 272 LYS 273 PRO 274 VAL 275 VAL 276 PHE 277 GLY 278 LYS 279 ILE 280 LYS 281 ARG 282 GLU 283 PHE 284 LYS 285 PRO 286 TRP 287 PHE 288 ASP 289 THR 290 LEU 291 LYS 292 ASP 293 LYS 294 ILE 295 LEU 296 ILE 297 ASN 298 LYS 299 ALA 300 ILE 301 ILE 302 VAL 303 ASP 304 ASP 305 ASN 320 ILE 321 LYS 322 GLU 323 LEU 324 LEU 325 VAL 326 ASP 327 TYR 328 ALA 329 ASN 330 ARG 331 GLN 332 GLY 333 ILE 334 ASP 335 GLY 336 ASP 337 LEU 338 VAL 339 LEU 340 SER 341 LEU 342 TYR 343 LYS 344 ALA 345 LEU 346 LEU 347 ASN 348 ASN 349 GLU 350 ASN 351 TRP 352 LYS 353 GLU 354 LEU 355 LEU 356 ASP 357 GLU 358 TYR 359 TYR 360 ASN 361 THR 362 LYS 363 PHE 364 ARG 365
Unit 4	MET 1 SER 2 MET 3 ILE 4 LEU 5 LYS 6 GLU 7 ILE 8 ARG 9 MET 10 ASN 11 ASN 12 PHE 13 LYS 14 SER 15 HIS 16 VAL 17 ASN 18 SER 19 ARG 20 ILE 21 LYS 22 PHE 23 GLU 24 LYS 25 GLY 26 ILE 27 VAL 28 ALA 29 ILE 30 ILE 31 GLY 32 GLU 33 ASN 34 GLY 35 SER 36 GLY 37 LYS 38 SER 39 SER 40 ILE 41 PHE 42 GLU 43 ALA 44 VAL 45 PHE 46 PHE 47 ALA 48 LEU 49 PHE 50 GLY 51 ALA 52 GLY 53 SER 54 ASN 55 PHE 56 ASN 57 TYR 58 ASP 59 THR 60 ILE 61 ILE 62 THR 63 LYS 64 GLY 65 LYS 66 LYS 67 SER 68 VAL 69 TYR 70 VAL 71 GLU 72 LEU 73 ASP 74 PHE 75 GLU 76 VAL 77 ASN 78 GLY 79 ASN 80 ASN 81 TYR 82 LYS 83 ILE 84 ILE 85 ARG 86 GLU 87 TYR 88 ASP 89 SER 90 GLY 91 ARG 92 GLY 93 GLY 94 ALA 95 LYS 96 LEU 97 TYR 98 LYS 99 ASN 100 GLY 101 LYS 102 PRO 103 TYR 104 ALA 105 THR 106 THR 107 ILE 108 SER 109 ALA 110 VAL 111 ASN 112 LYS 113 ALA 114 VAL 115 ASN 116 GLU 117 ILE 118 LEU 119 GLY 120 VAL 121 ASP 122 ARG 123 ASN 124 MET 125 PHE 126 LEU 127 ASN 128 SER 129 ILE 130 TYR 131 ILE 132 LYS 133 GLN 134 GLY 135 GLU 136 ILE 137 ALA 138 LYS 139 PHE 140 LEU 141 SER 142 LEU 143 LYS 144 PRO 145 SER 146 GLU 147 LYS 148 LEU 149 GLU 150 THR 151 VAL 152 ALA 153 LYS 154 LEU 155 LEU 156 GLY 157 ILE 158 ASP 159 GLU 160 PHE 161 GLU 162 LYS 163 CYS 164 TYR 165 GLN 166 LYS 167 MET 168 GLY 169 GLU 170 ILE 171 VAL 172 LYS 173 GLU 174 TYR 175 GLU 176 LYS 177 ARG 178 LEU 179 GLU 180 ARG 181 ILE 182 GLU 183 GLY 184 GLU 185 LEU 186 ASN 187 TYR 188 ASN 836 LEU 837 GLU 838 LYS 839 GLU 840 LYS 841 GLU 842 LYS 843 LEU 844 THR 845 LYS 846 PHE 847 VAL 848 GLU 849 TYR 850 LEU 851 ASP 852 LYS 853 VAL 854 ARG 855 ARG 856 ILE 857 PHE 858 GLY 859 ARG 860 ASN 861 GLY 862 PHE 863 GLN 864 ALA 865 TYR 866 LEU 867 ARG 868 GLU 869 LYS 870 TYR 871 VAL 872 PRO 873 LEU 874 ILE 875 GLN 876 LYS 877 TYR 878 LEU 879 ASN 880 GLU 881 ALA 882 PHE 883 SER 884 GLU 885 PHE 886 ASP 887 LEU 888 PRO 889 TYR 890 SER 891 PHE 892 VAL 893 GLU 894 LEU 895 THR 896 LYS 897 ASP 898 PHE 899 GLU 900 VAL 901 ARG 902 VAL 903 HIS 904 ALA 905 PRO 906 ASN 907 GLY 908 VAL 909 LEU 910 THR 911 ILE 912 ASP 913 ASN 914 LEU 915 SER 916 GLY 917 GLY 918 GLU 919 GLN 920 ILE 921 ALA 922 VAL 923 ALA 924 LEU 925 SER 926 LEU 927 ARG 928 LEU 929 ALA 930 ILE 931 ALA 932 ASN 933 ALA 934 LEU 935 ILE 936 GLY 937 ASN 938 ARG 939 VAL 940 GLU 941 CYS 942 ILE 943 ILE 944 LEU 945 ASP 946 GLU 947 PRO 948 THR 949 VAL 950 TYR 951 LEU 952 ASP 953 GLU 954 ASN 955 ARG 956 ARG 957 ALA 958 LYS 959 LEU 960 ALA 961 GLU 962 ILE 963 PHE 964 ARG 965 LYS 966 VAL 967 LYS 968 SER 969 ILE 970 PRO 971 GLN 972 MET 973 ILE 974 ILE 975 ILE 976 THR 977 HIS 978 HIS 979 ARG 980 GLU 981 LEU 982 GLU 983 ASP 984 VAL 985 ALA 986 ASP 987 VAL 988 ILE 989 ILE 990 ASN 991 VAL 992 LYS 993 LYS 994 ASP 995 GLY 996 ASN 997 VAL 998 SER 999 LYS 1000 VAL 1001 LYS 1002 ILE 1003 ASN 1004 GLY 1005

Other macromolecules

Unit 5	DA 1 DA 2 DA 3 DG 4 DT 5 DT 6 DG 7 DG 8 DG 9 DA 10 DT 11 DT 12 DG 13 DA 14 DG 15 DA 16 DC 17 DA 18 DC 19 DA 20 DC 21 DA 22 DT 23 DT 24 DC 25
Unit 6	DC -26 DG -25 DA -24 DA -23 DT -22 DG -21 DT -20 DG -19 DT -18 DG -17 DT -16 DC -15 DT -14 DC -13 DA -12 DA -11 DT -10 DC -9 DC -8 DC -7 DA -6 DA -5 DC -4

Ligands

Unit 7	MG 401 MG 402
Unit 8	AGS 1101
Unit 9	MG 401 MG 402
Unit 10	AGS 1101