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Sequence, Chains, Asymmetric and Biological Units

Title HUMAN NRP2 B1 DOMAIN IN COMPLEX WITH THE PEPTIDE CORRESPONDI C-TERMINUS OF VEGF-A
Keywords SIGNALING PROTEIN, NEUROPILIN-2, VEGFA, ANGIOGENESIS, HEPARI RECEPTOR
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5DN2     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   NEUROPILIN-2  A 156 1255 0
2  Protein   NEUROPILIN-2  B 156 1255 0
3  Protein   NEUROPILIN-2  C 156 1255 0
4  Protein   NEUROPILIN-2  D 156 1255 0
5  Protein   VASCULAR ENDOTHELIAL GROWTH FACTOR A  F 4 35 0
6  Protein   VASCULAR ENDOTHELIAL GROWTH FACTOR A  G 4 35 0
7  Protein   VASCULAR ENDOTHELIAL GROWTH FACTOR A  E 8 70 0
8  Ligand   NEUROPILIN-2  B 2 0 12
9  Ligand   NEUROPILIN-2  D 1 0 6
10 Water     268 0 269
total       911 5160 287
Proteins
Unit 1 MET274 PHE275 GLN276 CYS277 ASN278 VAL279 PRO280 LEU281 GLY282 MET283 GLU284 SER285 GLY286 ARG287 ILE288 ALA289 ASN290 GLU291 GLN292 ILE293 SER294 ALA295 SER296 SER297 THR298 TYR299 SER300 ASP301 GLY302 ARG303 TRP304 THR305 PRO306 GLN307 GLN308 SER309 ARG310 LEU311 HIS312 GLY313 ASP314 ASP315 ASN316 GLY317 TRP318 THR319 PRO320 ASN321 LEU322 ASP323 SER324 ASN325 LYS326 GLU327 TYR328 LEU329 GLN330 VAL331 ASP332 LEU333 ARG334 PHE335 LEU336 THR337 MET338 LEU339 THR340 ALA341 ILE342 ALA343 THR344 GLN345 GLY346 ALA347 ILE348 SER349 ARG350 GLU351 THR352 GLN353 ASN354 GLY355 TYR356 TYR357 VAL358 LYS359 SER360 TYR361 LYS362 LEU363 GLU364 VAL365 SER366 THR367 ASN368 GLY369 GLU370 ASP371 TRP372 MET373 VAL374 TYR375 ARG376 HIS377 GLY378 LYS379 ASN380 HIS381 LYS382 VAL383 PHE384 GLN385 ALA386 ASN387 ASN388 ASP389 ALA390 THR391 GLU392 VAL393 VAL394 LEU395 ASN396 LYS397 LEU398 HIS399 ALA400 PRO401 LEU402 LEU403 THR404 ARG405 PHE406 VAL407 ARG408 ILE409 ARG410 PRO411 GLN412 THR413 TRP414 HIS415 SER416 GLY417 ILE418 ALA419 LEU420 ARG421 LEU422 GLU423 LEU424 PHE425 GLY426 CYS427 ARG428 VAL429
Unit 2 MET274 PHE275 GLN276 CYS277 ASN278 VAL279 PRO280 LEU281 GLY282 MET283 GLU284 SER285 GLY286 ARG287 ILE288 ALA289 ASN290 GLU291 GLN292 ILE293 SER294 ALA295 SER296 SER297 THR298 TYR299 SER300 ASP301 GLY302 ARG303 TRP304 THR305 PRO306 GLN307 GLN308 SER309 ARG310 LEU311 HIS312 GLY313 ASP314 ASP315 ASN316 GLY317 TRP318 THR319 PRO320 ASN321 LEU322 ASP323 SER324 ASN325 LYS326 GLU327 TYR328 LEU329 GLN330 VAL331 ASP332 LEU333 ARG334 PHE335 LEU336 THR337 MET338 LEU339 THR340 ALA341 ILE342 ALA343 THR344 GLN345 GLY346 ALA347 ILE348 SER349 ARG350 GLU351 THR352 GLN353 ASN354 GLY355 TYR356 TYR357 VAL358 LYS359 SER360 TYR361 LYS362 LEU363 GLU364 VAL365 SER366 THR367 ASN368 GLY369 GLU370 ASP371 TRP372 MET373 VAL374 TYR375 ARG376 HIS377 GLY378 LYS379 ASN380 HIS381 LYS382 VAL383 PHE384 GLN385 ALA386 ASN387 ASN388 ASP389 ALA390 THR391 GLU392 VAL393 VAL394 LEU395 ASN396 LYS397 LEU398 HIS399 ALA400 PRO401 LEU402 LEU403 THR404 ARG405 PHE406 VAL407 ARG408 ILE409 ARG410 PRO411 GLN412 THR413 TRP414 HIS415 SER416 GLY417 ILE418 ALA419 LEU420 ARG421 LEU422 GLU423 LEU424 PHE425 GLY426 CYS427 ARG428 VAL429
Unit 3 MET274 PHE275 GLN276 CYS277 ASN278 VAL279 PRO280 LEU281 GLY282 MET283 GLU284 SER285 GLY286 ARG287 ILE288 ALA289 ASN290 GLU291 GLN292 ILE293 SER294 ALA295 SER296 SER297 THR298 TYR299 SER300 ASP301 GLY302 ARG303 TRP304 THR305 PRO306 GLN307 GLN308 SER309 ARG310 LEU311 HIS312 GLY313 ASP314 ASP315 ASN316 GLY317 TRP318 THR319 PRO320 ASN321 LEU322 ASP323 SER324 ASN325 LYS326 GLU327 TYR328 LEU329 GLN330 VAL331 ASP332 LEU333 ARG334 PHE335 LEU336 THR337 MET338 LEU339 THR340 ALA341 ILE342 ALA343 THR344 GLN345 GLY346 ALA347 ILE348 SER349 ARG350 GLU351 THR352 GLN353 ASN354 GLY355 TYR356 TYR357 VAL358 LYS359 SER360 TYR361 LYS362 LEU363 GLU364 VAL365 SER366 THR367 ASN368 GLY369 GLU370 ASP371 TRP372 MET373 VAL374 TYR375 ARG376 HIS377 GLY378 LYS379 ASN380 HIS381 LYS382 VAL383 PHE384 GLN385 ALA386 ASN387 ASN388 ASP389 ALA390 THR391 GLU392 VAL393 VAL394 LEU395 ASN396 LYS397 LEU398 HIS399 ALA400 PRO401 LEU402 LEU403 THR404 ARG405 PHE406 VAL407 ARG408 ILE409 ARG410 PRO411 GLN412 THR413 TRP414 HIS415 SER416 GLY417 ILE418 ALA419 LEU420 ARG421 LEU422 GLU423 LEU424 PHE425 GLY426 CYS427 ARG428 VAL429
Unit 4 MET274 PHE275 GLN276 CYS277 ASN278 VAL279 PRO280 LEU281 GLY282 MET283 GLU284 SER285 GLY286 ARG287 ILE288 ALA289 ASN290 GLU291 GLN292 ILE293 SER294 ALA295 SER296 SER297 THR298 TYR299 SER300 ASP301 GLY302 ARG303 TRP304 THR305 PRO306 GLN307 GLN308 SER309 ARG310 LEU311 HIS312 GLY313 ASP314 ASP315 ASN316 GLY317 TRP318 THR319 PRO320 ASN321 LEU322 ASP323 SER324 ASN325 LYS326 GLU327 TYR328 LEU329 GLN330 VAL331 ASP332 LEU333 ARG334 PHE335 LEU336 THR337 MET338 LEU339 THR340 ALA341 ILE342 ALA343 THR344 GLN345 GLY346 ALA347 ILE348 SER349 ARG350 GLU351 THR352 GLN353 ASN354 GLY355 TYR356 TYR357 VAL358 LYS359 SER360 TYR361 LYS362 LEU363 GLU364 VAL365 SER366 THR367 ASN368 GLY369 GLU370 ASP371 TRP372 MET373 VAL374 TYR375 ARG376 HIS377 GLY378 LYS379 ASN380 HIS381 LYS382 VAL383 PHE384 GLN385 ALA386 ASN387 ASN388 ASP389 ALA390 THR391 GLU392 VAL393 VAL394 LEU395 ASN396 LYS397 LEU398 HIS399 ALA400 PRO401 LEU402 LEU403 THR404 ARG405 PHE406 VAL407 ARG408 ILE409 ARG410 PRO411 GLN412 THR413 TRP414 HIS415 SER416 GLY417 ILE418 ALA419 LEU420 ARG421 LEU422 GLU423 LEU424 PHE425 GLY426 CYS427 ARG428 VAL429
Unit 5 LYS229 PRO230 ARG231 ARG232
Unit 6 LYS229 PRO230 ARG231 ARG232
Unit 7 CYS225 ARG226 CYS227 ASP228 LYS229 PRO230 ARG231 ARG232
Ligands
Unit 8 DIO501 GOL502
Unit 9 DIO501
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany