5DMK - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF IAG7 IN COMPLEX WITH RLGL-WE14
• Keywords: CHROMOGRANIN A, TYPE I DIABETES, T CELL, FUSION PROTEIN, IMM SYSTEM
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5DMK	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein		A	171	1375	0
2	Protein	BETA CHAIN OF MAJOR HISTOCOMPATIBILITY COMPLEX CL AG7,H2-AB1 PROTEIN	B	190	1585	0
3	Protein		C	173	1392	0
4	Protein	BETA CHAIN OF MAJOR HISTOCOMPATIBILITY COMPLEX CL AG7,H2-AB1 PROTEIN	D	186	1550	0
5	Protein		E	173	1392	0
6	Protein	BETA CHAIN OF MAJOR HISTOCOMPATIBILITY COMPLEX CL AG7,H2-AB1 PROTEIN	F	190	1580	0
7	Protein		G	173	1392	0
8	Protein	BETA CHAIN OF MAJOR HISTOCOMPATIBILITY COMPLEX CL AG7,H2-AB1 PROTEIN	H	189	1575	0
9	Ligand	BETA CHAIN OF MAJOR HISTOCOMPATIBILITY COMPLEX CL AG7,H2-AB1 PROTEIN	B	1	0	13
10	Ligand	BETA CHAIN OF MAJOR HISTOCOMPATIBILITY COMPLEX CL AG7,H2-AB1 PROTEIN	F	1	0	13
11	Water			333	0	333
total				1780	11841	359

Proteins

Unit 1	ILE 2 GLU 3 ALA 4 ASP 5 HIS 6 VAL 7 GLY 8 PHE 9 TYR 10 GLY 11 THR 12 THR 13 VAL 14 TYR 15 GLN 16 SER 17 PRO 18 GLY 19 ASP 20 ILE 21 GLY 22 GLN 23 TYR 24 THR 25 HIS 26 GLU 27 PHE 28 ASP 29 GLY 30 ASP 31 GLU 32 LEU 33 PHE 34 TYR 35 VAL 36 ASP 37 LEU 38 ASP 39 LYS 40 LYS 41 LYS 42 THR 43 VAL 44 TRP 45 ARG 46 LEU 47 PRO 48 GLU 49 PHE 50 GLY 51 GLN 52 LEU 53 ILE 54 LEU 55 PHE 56 GLU 57 PRO 58 GLN 59 GLY 60 GLY 61 LEU 62 GLN 63 ASN 64 ILE 65 ALA 66 ALA 67 GLU 68 LYS 69 HIS 70 ASN 71 LEU 72 GLY 73 ILE 74 LEU 75 THR 76 LYS 77 ARG 78 SER 79 ASN 80 PHE 81 THR 82 PRO 83 ALA 84 THR 85 ASN 86 GLU 87 ALA 88 PRO 89 GLN 90 ALA 91 THR 92 VAL 93 PHE 94 PRO 95 LYS 96 SER 97 PRO 98 VAL 99 LEU 100 LEU 101 GLY 102 GLN 103 PRO 104 ASN 105 THR 106 LEU 107 ILE 108 CYS 109 PHE 110 VAL 111 ASP 112 ASN 113 ILE 114 PHE 115 PRO 116 PRO 117 VAL 118 ILE 119 ASN 120 ILE 121 THR 122 TRP 123 LEU 124 ARG 125 ASN 126 SER 127 LYS 128 SER 129 VAL 130 THR 131 ASP 132 GLY 133 VAL 134 TYR 135 GLU 136 THR 137 SER 138 PHE 139 LEU 140 VAL 141 ASN 142 ARG 143 ASP 144 HIS 145 SER 146 PHE 147 HIS 148 LYS 149 LEU 150 SER 151 TYR 152 LEU 153 THR 154 PHE 155 ILE 156 PRO 157 SER 158 ASP 159 ASP 160 ASP 161 ILE 162 TYR 163 ASP 164 CYS 165 LYS 166 VAL 167 GLU 168 HIS 169 TRP 170 GLY 171 LEU 172
Unit 2	SER -27 ARG -26 LEU -25 GLY -24 LEU -23 TRP -22 SER -21 ARG -20 MET -19 ASP -18 GLN -17 LEU -16 GLU 5 ARG 6 HIS 7 PHE 8 VAL 9 HIS 10 GLN 11 PHE 12 LYS 13 GLY 14 GLU 15 CYS 16 TYR 17 PHE 18 THR 19 ASN 20 GLY 21 THR 22 GLN 23 ARG 24 ILE 25 ARG 26 LEU 27 VAL 28 THR 29 ARG 30 TYR 31 ILE 32 TYR 33 ASN 34 ARG 35 GLU 36 GLU 37 TYR 38 LEU 39 ARG 40 PHE 41 ASP 42 SER 43 ASP 44 VAL 45 GLY 46 GLU 47 TYR 48 ARG 49 ALA 50 VAL 51 THR 52 GLU 53 LEU 54 GLY 55 ARG 56 HIS 57 SER 58 ALA 59 GLU 60 TYR 61 TYR 62 ASN 63 LYS 64 GLN 65 TYR 67 LEU 69 GLU 70 ARG 71 THR 72 ARG 73 ALA 74 GLU 75 LEU 76 ASP 77 THR 78 ALA 79 CYS 80 ARG 81 HIS 82 ASN 83 TYR 84 GLU 85 GLU 86 THR 87 GLU 88 VAL 89 PRO 90 THR 91 SER 92 LEU 93 ARG 94 ARG 95 LEU 96 GLU 98 GLN 99 PRO 100 ASN 101 VAL 102 ALA 103 ILE 104 SER 105 LEU 106 SER 107 HIS 115 ASN 116 THR 117 LEU 118 VAL 119 CYS 120 SER 121 VAL 122 THR 123 ASP 124 PHE 125 TYR 126 PRO 127 ALA 128 LYS 129 ILE 130 LYS 131 VAL 132 ARG 133 TRP 134 PHE 135 ARG 136 ASN 137 GLY 138 GLN 139 GLU 140 GLU 141 THR 142 VAL 143 GLY 144 VAL 145 SER 146 SER 147 THR 148 GLN 149 LEU 150 ILE 151 ARG 152 ASN 153 GLY 154 ASP 155 TRP 156 THR 157 PHE 158 GLN 159 VAL 160 LEU 161 VAL 162 MET 163 LEU 164 GLU 165 MET 166 THR 167 PRO 168 HIS 169 GLN 170 GLY 171 GLU 172 VAL 173 TYR 174 THR 175 CYS 176 HIS 177 VAL 178 GLU 179 HIS 180 PRO 181 SER 182 LEU 183 LYS 184 SER 185 PRO 186 ILE 187 THR 188 VAL 189 GLU 190 TRP 191 ARG 192
Unit 3	ASP 1 ILE 2 GLU 3 ALA 4 ASP 5 HIS 6 VAL 7 GLY 8 PHE 9 TYR 10 GLY 11 THR 12 THR 13 VAL 14 TYR 15 GLN 16 SER 17 PRO 18 GLY 19 ASP 20 ILE 21 GLY 22 GLN 23 TYR 24 THR 25 HIS 26 GLU 27 PHE 28 ASP 29 GLY 30 ASP 31 GLU 32 LEU 33 PHE 34 TYR 35 VAL 36 ASP 37 LEU 38 ASP 39 LYS 40 LYS 41 LYS 42 THR 43 VAL 44 TRP 45 ARG 46 LEU 47 PRO 48 GLU 49 PHE 50 GLY 51 GLN 52 LEU 53 ILE 54 LEU 55 PHE 56 GLU 57 PRO 58 GLN 59 GLY 60 GLY 61 LEU 62 GLN 63 ASN 64 ILE 65 ALA 66 ALA 67 GLU 68 LYS 69 HIS 70 ASN 71 LEU 72 GLY 73 ILE 74 LEU 75 THR 76 LYS 77 ARG 78 SER 79 ASN 80 PHE 81 THR 82 PRO 83 ALA 84 THR 85 ASN 86 GLU 87 ALA 88 PRO 89 GLN 90 ALA 91 THR 92 VAL 93 PHE 94 PRO 95 LYS 96 SER 97 PRO 98 VAL 99 LEU 100 LEU 101 GLY 102 GLN 103 PRO 104 ASN 105 THR 106 LEU 107 ILE 108 CYS 109 PHE 110 VAL 111 ASP 112 ASN 113 ILE 114 PHE 115 PRO 116 PRO 117 VAL 118 ILE 119 ASN 120 ILE 121 THR 122 TRP 123 LEU 124 ARG 125 ASN 126 SER 127 LYS 128 SER 129 VAL 130 THR 131 ASP 132 GLY 133 VAL 134 TYR 135 GLU 136 THR 137 SER 138 PHE 139 LEU 140 VAL 141 ASN 142 ARG 143 ASP 144 HIS 145 SER 146 PHE 147 HIS 148 LYS 149 LEU 150 SER 151 TYR 152 LEU 153 THR 154 PHE 155 ILE 156 PRO 157 SER 158 ASP 159 ASP 160 ASP 161 ILE 162 TYR 163 ASP 164 CYS 165 LYS 166 VAL 167 GLU 168 HIS 169 TRP 170 GLY 171 LEU 172 GLU 173
Unit 4	SER -27 ARG -26 LEU -25 GLY -24 LEU -23 TRP -22 SER -21 ARG -20 MET -19 ASP -18 GLN -17 LEU -16 GLU 5 ARG 6 HIS 7 PHE 8 VAL 9 HIS 10 GLN 11 PHE 12 LYS 13 GLY 14 GLU 15 CYS 16 TYR 17 PHE 18 THR 19 ASN 20 GLY 21 THR 22 GLN 23 ARG 24 ILE 25 ARG 26 LEU 27 VAL 28 THR 29 ARG 30 TYR 31 ILE 32 TYR 33 ASN 34 ARG 35 GLU 36 GLU 37 TYR 38 LEU 39 ARG 40 PHE 41 ASP 42 SER 43 ASP 44 VAL 45 GLY 46 GLU 47 TYR 48 ARG 49 ALA 50 VAL 51 THR 52 GLU 53 LEU 54 GLY 55 ARG 56 HIS 57 SER 58 ALA 59 GLU 60 TYR 61 TYR 62 ASN 63 LYS 64 GLN 65 TYR 67 LEU 69 GLU 70 ARG 71 THR 72 ARG 73 ALA 74 GLU 75 LEU 76 ASP 77 THR 78 ALA 79 CYS 80 ARG 81 HIS 82 ASN 83 TYR 84 GLU 85 GLU 86 THR 87 GLU 88 VAL 89 PRO 90 THR 91 SER 92 LEU 93 ARG 94 ARG 95 LEU 96 GLU 98 GLN 99 PRO 100 ASN 101 VAL 102 ALA 103 ILE 104 SER 105 LEU 106 SER 107 HIS 115 ASN 116 THR 117 LEU 118 VAL 119 CYS 120 SER 121 VAL 122 THR 123 ASP 124 PHE 125 TYR 126 PRO 127 ALA 128 LYS 129 ILE 130 LYS 131 VAL 132 ARG 133 TRP 134 PHE 135 GLN 139 GLU 140 GLU 141 THR 142 VAL 143 GLY 144 VAL 145 SER 146 SER 147 THR 148 GLN 149 LEU 150 ILE 151 ARG 152 ASN 153 GLY 154 ASP 155 TRP 156 THR 157 PHE 158 GLN 159 VAL 160 LEU 161 VAL 162 MET 163 LEU 164 GLU 165 MET 166 PRO 168 HIS 169 GLN 170 GLY 171 GLU 172 VAL 173 TYR 174 THR 175 CYS 176 HIS 177 VAL 178 GLU 179 HIS 180 PRO 181 SER 182 LEU 183 LYS 184 SER 185 PRO 186 ILE 187 THR 188 VAL 189 GLU 190 TRP 191 ARG 192
Unit 5	ASP 1 ILE 2 GLU 3 ALA 4 ASP 5 HIS 6 VAL 7 GLY 8 PHE 9 TYR 10 GLY 11 THR 12 THR 13 VAL 14 TYR 15 GLN 16 SER 17 PRO 18 GLY 19 ASP 20 ILE 21 GLY 22 GLN 23 TYR 24 THR 25 HIS 26 GLU 27 PHE 28 ASP 29 GLY 30 ASP 31 GLU 32 LEU 33 PHE 34 TYR 35 VAL 36 ASP 37 LEU 38 ASP 39 LYS 40 LYS 41 LYS 42 THR 43 VAL 44 TRP 45 ARG 46 LEU 47 PRO 48 GLU 49 PHE 50 GLY 51 GLN 52 LEU 53 ILE 54 LEU 55 PHE 56 GLU 57 PRO 58 GLN 59 GLY 60 GLY 61 LEU 62 GLN 63 ASN 64 ILE 65 ALA 66 ALA 67 GLU 68 LYS 69 HIS 70 ASN 71 LEU 72 GLY 73 ILE 74 LEU 75 THR 76 LYS 77 ARG 78 SER 79 ASN 80 PHE 81 THR 82 PRO 83 ALA 84 THR 85 ASN 86 GLU 87 ALA 88 PRO 89 GLN 90 ALA 91 THR 92 VAL 93 PHE 94 PRO 95 LYS 96 SER 97 PRO 98 VAL 99 LEU 100 LEU 101 GLY 102 GLN 103 PRO 104 ASN 105 THR 106 LEU 107 ILE 108 CYS 109 PHE 110 VAL 111 ASP 112 ASN 113 ILE 114 PHE 115 PRO 116 PRO 117 VAL 118 ILE 119 ASN 120 ILE 121 THR 122 TRP 123 LEU 124 ARG 125 ASN 126 SER 127 LYS 128 SER 129 VAL 130 THR 131 ASP 132 GLY 133 VAL 134 TYR 135 GLU 136 THR 137 SER 138 PHE 139 LEU 140 VAL 141 ASN 142 ARG 143 ASP 144 HIS 145 SER 146 PHE 147 HIS 148 LYS 149 LEU 150 SER 151 TYR 152 LEU 153 THR 154 PHE 155 ILE 156 PRO 157 SER 158 ASP 159 ASP 160 ASP 161 ILE 162 TYR 163 ASP 164 CYS 165 LYS 166 VAL 167 GLU 168 HIS 169 TRP 170 GLY 171 LEU 172 GLU 173
Unit 6	SER -27 ARG -26 LEU -25 GLY -24 LEU -23 TRP -22 SER -21 ARG -20 MET -19 ASP -18 GLN -17 LEU -16 GLU 5 ARG 6 HIS 7 PHE 8 VAL 9 HIS 10 GLN 11 PHE 12 LYS 13 GLY 14 GLU 15 CYS 16 TYR 17 PHE 18 THR 19 ASN 20 GLY 21 THR 22 GLN 23 ARG 24 ILE 25 ARG 26 LEU 27 VAL 28 THR 29 ARG 30 TYR 31 ILE 32 TYR 33 ASN 34 ARG 35 GLU 36 GLU 37 TYR 38 LEU 39 ARG 40 PHE 41 ASP 42 SER 43 ASP 44 VAL 45 GLY 46 GLU 47 TYR 48 ARG 49 ALA 50 VAL 51 THR 52 GLU 53 LEU 54 GLY 55 ARG 56 HIS 57 SER 58 ALA 59 GLU 60 TYR 61 TYR 62 ASN 63 LYS 64 GLN 65 TYR 67 LEU 69 GLU 70 ARG 71 THR 72 ARG 73 ALA 74 GLU 75 LEU 76 ASP 77 THR 78 ALA 79 CYS 80 ARG 81 HIS 82 ASN 83 TYR 84 GLU 85 GLU 86 THR 87 GLU 88 VAL 89 PRO 90 THR 91 SER 92 LEU 93 ARG 94 ARG 95 LEU 96 GLU 98 GLN 99 PRO 100 ASN 101 VAL 102 ALA 103 ILE 104 SER 105 LEU 106 SER 107 HIS 115 ASN 116 THR 117 LEU 118 VAL 119 CYS 120 SER 121 VAL 122 THR 123 ASP 124 PHE 125 TYR 126 PRO 127 ALA 128 LYS 129 ILE 130 LYS 131 VAL 132 ARG 133 TRP 134 PHE 135 ARG 136 ASN 137 GLY 138 GLN 139 GLU 140 GLU 141 THR 142 VAL 143 GLY 144 VAL 145 SER 146 SER 147 THR 148 GLN 149 LEU 150 ILE 151 ARG 152 ASN 153 GLY 154 ASP 155 TRP 156 THR 157 PHE 158 GLN 159 VAL 160 LEU 161 VAL 162 MET 163 LEU 164 GLU 165 MET 166 THR 167 PRO 168 HIS 169 GLN 170 GLY 171 GLU 172 VAL 173 TYR 174 THR 175 CYS 176 HIS 177 VAL 178 GLU 179 HIS 180 PRO 181 SER 182 LEU 183 LYS 184 SER 185 PRO 186 ILE 187 THR 188 VAL 189 GLU 190 TRP 191 ARG 192
Unit 7	ASP 1 ILE 2 GLU 3 ALA 4 ASP 5 HIS 6 VAL 7 GLY 8 PHE 9 TYR 10 GLY 11 THR 12 THR 13 VAL 14 TYR 15 GLN 16 SER 17 PRO 18 GLY 19 ASP 20 ILE 21 GLY 22 GLN 23 TYR 24 THR 25 HIS 26 GLU 27 PHE 28 ASP 29 GLY 30 ASP 31 GLU 32 LEU 33 PHE 34 TYR 35 VAL 36 ASP 37 LEU 38 ASP 39 LYS 40 LYS 41 LYS 42 THR 43 VAL 44 TRP 45 ARG 46 LEU 47 PRO 48 GLU 49 PHE 50 GLY 51 GLN 52 LEU 53 ILE 54 LEU 55 PHE 56 GLU 57 PRO 58 GLN 59 GLY 60 GLY 61 LEU 62 GLN 63 ASN 64 ILE 65 ALA 66 ALA 67 GLU 68 LYS 69 HIS 70 ASN 71 LEU 72 GLY 73 ILE 74 LEU 75 THR 76 LYS 77 ARG 78 SER 79 ASN 80 PHE 81 THR 82 PRO 83 ALA 84 THR 85 ASN 86 GLU 87 ALA 88 PRO 89 GLN 90 ALA 91 THR 92 VAL 93 PHE 94 PRO 95 LYS 96 SER 97 PRO 98 VAL 99 LEU 100 LEU 101 GLY 102 GLN 103 PRO 104 ASN 105 THR 106 LEU 107 ILE 108 CYS 109 PHE 110 VAL 111 ASP 112 ASN 113 ILE 114 PHE 115 PRO 116 PRO 117 VAL 118 ILE 119 ASN 120 ILE 121 THR 122 TRP 123 LEU 124 ARG 125 ASN 126 SER 127 LYS 128 SER 129 VAL 130 THR 131 ASP 132 GLY 133 VAL 134 TYR 135 GLU 136 THR 137 SER 138 PHE 139 LEU 140 VAL 141 ASN 142 ARG 143 ASP 144 HIS 145 SER 146 PHE 147 HIS 148 LYS 149 LEU 150 SER 151 TYR 152 LEU 153 THR 154 PHE 155 ILE 156 PRO 157 SER 158 ASP 159 ASP 160 ASP 161 ILE 162 TYR 163 ASP 164 CYS 165 LYS 166 VAL 167 GLU 168 HIS 169 TRP 170 GLY 171 LEU 172 GLU 173
Unit 8	SER -27 ARG -26 LEU -25 GLY -24 LEU -23 TRP -22 SER -21 ARG -20 MET -19 ASP -18 GLN -17 LEU -16 GLU 5 ARG 6 HIS 7 PHE 8 VAL 9 HIS 10 GLN 11 PHE 12 LYS 13 GLY 14 GLU 15 CYS 16 TYR 17 PHE 18 THR 19 ASN 20 GLY 21 THR 22 GLN 23 ARG 24 ILE 25 ARG 26 LEU 27 VAL 28 THR 29 ARG 30 TYR 31 ILE 32 TYR 33 ASN 34 ARG 35 GLU 36 GLU 37 TYR 38 LEU 39 ARG 40 PHE 41 ASP 42 SER 43 ASP 44 VAL 45 GLY 46 GLU 47 TYR 48 ARG 49 ALA 50 VAL 51 THR 52 GLU 53 LEU 54 GLY 55 ARG 56 HIS 57 SER 58 ALA 59 GLU 60 TYR 61 TYR 62 ASN 63 LYS 64 GLN 65 TYR 67 LEU 69 GLU 70 ARG 71 THR 72 ARG 73 ALA 74 GLU 75 LEU 76 ASP 77 THR 78 ALA 79 CYS 80 ARG 81 HIS 82 ASN 83 TYR 84 GLU 85 GLU 86 THR 87 GLU 88 VAL 89 PRO 90 THR 91 SER 92 LEU 93 ARG 94 ARG 95 LEU 96 GLU 98 GLN 99 PRO 100 ASN 101 VAL 102 ALA 103 ILE 104 SER 105 LEU 106 SER 107 HIS 115 ASN 116 THR 117 LEU 118 VAL 119 CYS 120 SER 121 VAL 122 THR 123 ASP 124 PHE 125 TYR 126 PRO 127 ALA 128 LYS 129 ILE 130 LYS 131 VAL 132 ARG 133 TRP 134 PHE 135 ARG 136 ASN 137 GLY 138 GLN 139 GLU 140 GLU 141 THR 142 VAL 143 GLY 144 VAL 145 SER 146 SER 147 THR 148 GLN 149 LEU 150 ILE 151 ARG 152 ASN 153 GLY 154 ASP 155 TRP 156 THR 157 PHE 158 GLN 159 VAL 160 LEU 161 VAL 162 MET 163 LEU 164 GLU 165 MET 166 THR 167 PRO 168 HIS 169 GLN 170 GLY 171 GLU 172 VAL 173 TYR 174 THR 175 CYS 176 HIS 177 VAL 178 GLU 179 HIS 180 PRO 181 SER 182 LEU 183 LYS 184 SER 185 PRO 186 ILE 187 THR 188 VAL 189 GLU 190 TRP 191

Ligands

Unit 9	FLC 301
Unit 10	FLC 301