5DMJ - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURE OF THE EXTRACELLULAR DOMAIN OF THE CD40 IN COMPLEX 3H56-5 DAB
• Keywords: CELL SURFACE RECEPTOR, DOMAIN ANTIBODY, PROTEIN/PROTEIN INTE IMMUNE SYSTEM-SIGNALING PROTEIN COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5DMJ	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein		A	165	1168	0
2	Protein	3H65-5 DOMAIN ANTIBODY (DAB)	B	117	905	0
3	Protein		D	167	1183	0
4	Protein	3H65-5 DOMAIN ANTIBODY (DAB)	E	116	884	0
5	Protein		F	163	1119	0
6	Protein	3H65-5 DOMAIN ANTIBODY (DAB)	G	116	878	0
7	Ligand		A	1	0	1
8	Ligand		D	1	0	1
9	Ligand		F	1	0	1
10	Water			12	0	13
total				859	6137	16

Proteins

Unit 1	THR 24 ALA 25 CYS 26 ARG 27 GLU 28 LYS 29 GLN 30 TYR 31 LEU 32 ILE 33 ASN 34 SER 35 GLN 36 CYS 37 CYS 38 SER 39 LEU 40 CYS 41 GLN 42 PRO 43 GLY 44 GLN 45 LYS 46 LEU 47 VAL 48 SER 49 ASP 50 CYS 51 THR 52 GLU 53 PHE 54 THR 55 GLU 56 THR 57 GLU 58 CYS 59 LEU 60 PRO 61 CYS 62 GLY 63 GLU 64 SER 65 GLU 66 PHE 67 LEU 68 ASP 69 THR 70 TRP 71 ASN 72 ARG 73 GLU 74 THR 75 HIS 76 CYS 77 HIS 78 GLN 79 HIS 80 LYS 81 TYR 82 CYS 83 ASP 84 PRO 85 ASN 86 LEU 87 GLY 88 LEU 89 ARG 90 VAL 91 GLN 92 GLN 93 LYS 94 GLY 95 THR 96 SER 97 GLU 98 THR 99 ASP 100 THR 101 ILE 102 CYS 103 THR 104 CYS 105 GLU 106 GLU 107 GLY 108 TRP 109 HIS 110 CYS 111 THR 112 SER 113 GLU 114 ALA 115 CYS 116 GLU 117 SER 118 CYS 119 VAL 120 LEU 121 HIS 122 ARG 123 SER 124 CYS 125 SER 126 PRO 127 GLY 128 PHE 129 GLY 130 VAL 131 LYS 132 GLN 133 ILE 134 ALA 135 THR 136 GLY 137 VAL 138 SER 139 ASP 140 THR 141 ILE 142 CYS 143 GLU 144 PRO 145 CYS 146 PRO 147 VAL 148 GLY 149 PHE 150 PHE 151 SER 152 ASP 153 VAL 154 SER 155 SER 156 ALA 157 PHE 158 GLU 159 LYS 160 CYS 161 HIS 162 PRO 163 TRP 164 THR 165 SER 166 CYS 167 GLU 168 THR 169 LYS 170 ASP 171 LEU 172 VAL 173 VAL 174 GLN 175 GLN 176 ALA 177 GLY 178 THR 179 ASP 180 LYS 181 THR 182 ASP 183 VAL 184 VAL 185 CYS 186 GLY 187 PRO 188
Unit 2	GLU 1 VAL 2 GLN 3 LEU 4 LEU 5 GLU 6 SER 7 GLY 8 GLY 9 GLY 10 LEU 11 VAL 12 GLN 13 PRO 14 GLY 15 GLY 16 SER 17 LEU 18 ARG 19 LEU 20 SER 21 CYS 22 ALA 23 ALA 24 SER 25 GLY 26 PHE 27 THR 28 PHE 29 ARG 30 ASP 31 TYR 32 GLU 33 MET 34 TRP 35 TRP 36 VAL 37 ARG 38 GLN 39 ALA 40 PRO 41 GLY 42 LYS 43 GLY 44 LEU 45 GLU 46 ARG 47 VAL 48 SER 49 ALA 50 ILE 51 ASN 52 PRO 52A GLN 53 GLY 54 THR 55 ARG 56 THR 57 TYR 58 TYR 59 ALA 60 ASP 61 SER 62 VAL 63 MET 64 GLY 65 ARG 66 PHE 67 THR 68 ILE 69 SER 70 ARG 71 ASP 72 ASN 73 SER 74 LYS 75 ASN 76 THR 77 LEU 78 TYR 79 LEU 80 GLN 81 MET 82 ASN 82A SER 82B LEU 82C ARG 83 ALA 84 GLU 85 ASP 86 THR 87 ALA 88 VAL 89 TYR 90 TYR 91 CYS 92 ALA 93 LYS 94 LEU 95 PRO 96 PHE 97 THR 98 PHE 99 ASP 101 ASP 102 TRP 103 GLY 104 GLN 105 GLY 106 THR 107 LEU 108 VAL 109 THR 110 VAL 111 SER 112 SER 113 ALA 114
Unit 3	THR 24 ALA 25 CYS 26 ARG 27 GLU 28 LYS 29 GLN 30 TYR 31 LEU 32 ILE 33 ASN 34 SER 35 GLN 36 CYS 37 CYS 38 SER 39 LEU 40 CYS 41 GLN 42 PRO 43 GLY 44 GLN 45 LYS 46 LEU 47 VAL 48 SER 49 ASP 50 CYS 51 THR 52 GLU 53 PHE 54 THR 55 GLU 56 THR 57 GLU 58 CYS 59 LEU 60 PRO 61 CYS 62 GLY 63 GLU 64 SER 65 GLU 66 PHE 67 LEU 68 ASP 69 THR 70 TRP 71 ASN 72 ARG 73 GLU 74 THR 75 HIS 76 CYS 77 HIS 78 GLN 79 HIS 80 LYS 81 TYR 82 CYS 83 ASP 84 PRO 85 ASN 86 LEU 87 GLY 88 LEU 89 ARG 90 VAL 91 GLN 92 GLN 93 LYS 94 GLY 95 THR 96 SER 97 GLU 98 THR 99 ASP 100 THR 101 ILE 102 CYS 103 THR 104 CYS 105 GLU 106 GLU 107 GLY 108 TRP 109 HIS 110 CYS 111 THR 112 SER 113 GLU 114 ALA 115 CYS 116 GLU 117 SER 118 CYS 119 VAL 120 LEU 121 HIS 122 ARG 123 SER 124 CYS 125 SER 126 PRO 127 GLY 128 PHE 129 GLY 130 VAL 131 LYS 132 GLN 133 ILE 134 ALA 135 THR 136 GLY 137 VAL 138 SER 139 ASP 140 THR 141 ILE 142 CYS 143 GLU 144 PRO 145 CYS 146 PRO 147 VAL 148 GLY 149 PHE 150 PHE 151 SER 152 ASP 153 VAL 154 SER 155 SER 156 ALA 157 PHE 158 GLU 159 LYS 160 CYS 161 HIS 162 PRO 163 TRP 164 THR 165 SER 166 CYS 167 GLU 168 THR 169 LYS 170 ASP 171 LEU 172 VAL 173 VAL 174 GLN 175 GLN 176 ALA 177 GLY 178 THR 179 ASP 180 LYS 181 THR 182 ASP 183 VAL 184 VAL 185 CYS 186 GLY 187 PRO 188 GLN 189 ASP 190
Unit 4	THR -1 GLU 1 VAL 2 GLN 3 LEU 4 LEU 5 GLU 6 SER 7 GLY 8 GLY 9 GLY 10 LEU 11 VAL 12 GLN 13 PRO 14 GLY 15 GLY 16 SER 17 LEU 18 ARG 19 LEU 20 SER 21 CYS 22 ALA 23 ALA 24 SER 25 GLY 26 PHE 27 THR 28 PHE 29 ARG 30 ASP 31 TYR 32 GLU 33 MET 34 TRP 35 TRP 36 VAL 37 ARG 38 GLN 39 ALA 40 PRO 41 GLY 42 LYS 43 GLY 44 LEU 45 GLU 46 ARG 47 VAL 48 SER 49 ALA 50 ILE 51 ASN 52 PRO 52A GLN 53 GLY 54 THR 55 ARG 56 THR 57 TYR 58 TYR 59 ALA 60 ASP 61 SER 62 VAL 63 MET 64 GLY 65 ARG 66 PHE 67 THR 68 ILE 69 SER 70 ARG 71 ASP 72 ASN 73 SER 74 LYS 75 ASN 76 THR 77 LEU 78 TYR 79 LEU 80 GLN 81 MET 82 ASN 82A SER 82B LEU 82C ARG 83 ALA 84 GLU 85 ASP 86 THR 87 ALA 88 VAL 89 TYR 90 TYR 91 CYS 92 ALA 93 LYS 94 LEU 95 PRO 96 PHE 97 THR 98 PHE 99 ASP 101 ASP 102 TRP 103 GLY 104 GLN 105 GLY 106 THR 107 LEU 108 VAL 109 THR 110 VAL 111 SER 112
Unit 5	CYS 26 ARG 27 GLU 28 LYS 29 GLN 30 TYR 31 LEU 32 ILE 33 ASN 34 SER 35 GLN 36 CYS 37 CYS 38 SER 39 LEU 40 CYS 41 GLN 42 PRO 43 GLY 44 GLN 45 LYS 46 LEU 47 VAL 48 SER 49 ASP 50 CYS 51 THR 52 GLU 53 PHE 54 THR 55 GLU 56 THR 57 GLU 58 CYS 59 LEU 60 PRO 61 CYS 62 GLY 63 GLU 64 SER 65 GLU 66 PHE 67 LEU 68 ASP 69 THR 70 TRP 71 ASN 72 ARG 73 GLU 74 THR 75 HIS 76 CYS 77 HIS 78 GLN 79 HIS 80 LYS 81 TYR 82 CYS 83 ASP 84 PRO 85 ASN 86 LEU 87 GLY 88 LEU 89 ARG 90 VAL 91 GLN 92 GLN 93 LYS 94 GLY 95 THR 96 SER 97 GLU 98 THR 99 ASP 100 THR 101 ILE 102 CYS 103 THR 104 CYS 105 GLU 106 GLU 107 GLY 108 TRP 109 HIS 110 CYS 111 THR 112 SER 113 GLU 114 ALA 115 CYS 116 GLU 117 SER 118 CYS 119 VAL 120 LEU 121 HIS 122 ARG 123 SER 124 CYS 125 SER 126 PRO 127 GLY 128 PHE 129 GLY 130 VAL 131 LYS 132 GLN 133 ILE 134 ALA 135 THR 136 GLY 137 VAL 138 SER 139 ASP 140 THR 141 ILE 142 CYS 143 GLU 144 PRO 145 CYS 146 PRO 147 VAL 148 GLY 149 PHE 150 PHE 151 SER 152 ASP 153 VAL 154 SER 155 SER 156 ALA 157 PHE 158 GLU 159 LYS 160 CYS 161 HIS 162 PRO 163 TRP 164 THR 165 SER 166 CYS 167 GLU 168 THR 169 LYS 170 ASP 171 LEU 172 VAL 173 VAL 174 GLN 175 GLN 176 ALA 177 GLY 178 THR 179 ASP 180 LYS 181 THR 182 ASP 183 VAL 184 VAL 185 CYS 186 GLY 187 PRO 188
Unit 6	GLU 1 VAL 2 GLN 3 LEU 4 LEU 5 GLU 6 SER 7 GLY 8 GLY 9 GLY 10 LEU 11 VAL 12 GLN 13 PRO 14 GLY 15 GLY 16 SER 17 LEU 18 ARG 19 LEU 20 SER 21 CYS 22 ALA 23 ALA 24 SER 25 GLY 26 PHE 27 THR 28 PHE 29 ARG 30 ASP 31 TYR 32 GLU 33 MET 34 TRP 35 TRP 36 VAL 37 ARG 38 GLN 39 ALA 40 PRO 41 GLY 42 LYS 43 GLY 44 LEU 45 GLU 46 ARG 47 VAL 48 SER 49 ALA 50 ILE 51 ASN 52 PRO 52A GLN 53 GLY 54 THR 55 ARG 56 THR 57 TYR 58 TYR 59 ALA 60 ASP 61 SER 62 VAL 63 MET 64 GLY 65 ARG 66 PHE 67 THR 68 ILE 69 SER 70 ARG 71 ASP 72 ASN 73 SER 74 LYS 75 ASN 76 THR 77 LEU 78 TYR 79 LEU 80 GLN 81 MET 82 ASN 82A SER 82B LEU 82C ARG 83 ALA 84 GLU 85 ASP 86 THR 87 ALA 88 VAL 89 TYR 90 TYR 91 CYS 92 ALA 93 LYS 94 LEU 95 PRO 96 PHE 97 THR 98 PHE 99 ASP 101 ASP 102 TRP 103 GLY 104 GLN 105 GLY 106 THR 107 LEU 108 VAL 109 THR 110 VAL 111 SER 112 SER 113

Ligands

Unit 7	K 301
Unit 8	K 301
Unit 9	K 301