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Sequence, Chains, Asymmetric and Biological Units

Title X-RAY STRUCTURE OF THE FAB FRAGMENT OF THE ANTI TAU ANTIBODY COMPLEX WITH THE PHOSPHORYLATED TAU PEPTIDE (416-430)
Keywords ANTIBODY, FAB FRAGMENT, TAU PROTEIN, TAU-PSER422, TAU-PSER42 COMPLEX, IMMUNE SYSTEM
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5DMG     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   RB86 ANTIBODY FAB FRAGMENT HEAVY CHAIN  H 202 1490 0
2  Protein   RB86 ANTIBODY FAB FRAGMENT LIGHT CHAIN  L 216 1631 0
3  Protein   RB86 ANTIBODY FAB FRAGMENT HEAVY CHAIN  C 202 1490 0
4  Protein   RB86 ANTIBODY FAB FRAGMENT LIGHT CHAIN  D 217 1640 0
5  Protein   RB86 ANTIBODY FAB FRAGMENT HEAVY CHAIN  E 198 1464 0
6  Protein   RB86 ANTIBODY FAB FRAGMENT LIGHT CHAIN  F 215 1626 0
7  Protein   MICROTUBULE-ASSOCIATED PROTEIN  Z 9 59 10
8  Protein   MICROTUBULE-ASSOCIATED PROTEIN  P 12 80 10
9  Protein   MICROTUBULE-ASSOCIATED PROTEIN  X 7 47 10
10 Water     274 0 276
total       1552 9527 306
Proteins
Unit 1 GLN102 SER103 VAL104 GLU105 GLU106 SER107 GLY108 GLY109 ARG110 LEU111 VAL112 THR113 PRO114 GLY115 THR116 PRO117 LEU118 THR119 LEU120 THR121 CYS122 THR123 VAL124 SER125 GLY151 PHE152 SER153 LEU154 SER155 SER156 ASN196 ALA197 ILE198 ASN199 TRP201 VAL202 ARG203 GLN204 ALA205 PRO206 GLY207 LYS208 GLY209 LEU210 GLU211 TRP212 ILE213 GLY214 TYR251 ILE252 ALA253 VAL254 SER288 GLY289 ASN290 THR291 TYR292 TYR293 ALA294 SER295 TRP296 ALA297 LYS298 GLY299 ARG301 PHE302 THR303 ILE304 SER305 LYS306 ALA307 SER308 THR311 THR312 VAL313 ASP314 LEU315 LYS316 MET317 THR318 SER319 PRO320 THR321 ALA322 GLU323 ASP324 THR325 GLY326 THR327 TYR328 PHE329 CYS330 GLY331 LYS332 SER351 ASN398 ILE399 TRP401 GLY402 PRO403 GLY404 THR405 LEU406 VAL407 THR408 VAL409 SER410 LEU411 ALA1000 SER1001 THR1002 LYS1003 GLY1004 PRO1005 SER1006 VAL1007 PHE1008 PRO1009 LEU1010 ALA1011 PRO1012 THR1021 ALA1022 ALA1023 LEU1024 GLY1025 CYS1026 LEU1027 VAL1028 LYS1029 ASP1030 TYR1031 PHE1032 PRO1033 GLU1034 PRO1035 VAL1036 THR1037 VAL1038 SER1039 TRP1040 ASN1041 SER1042 GLY1043 ALA1044 LEU1045 THR1046 SER1047 GLY1048 VAL1049 HIS1050 THR1051 PHE1052 PRO1053 ALA1054 VAL1055 LEU1056 GLN1057 SER1058 SER1059 GLY1060 LEU1061 TYR1062 SER1063 LEU1064 SER1065 SER1066 VAL1067 VAL1068 THR1069 VAL1070 PRO1071 SER1072 SER1073 SER1074 LEU1075 GLY1076 THR1077 GLN1078 THR1079 TYR1080 ILE1081 CYS1082 ASN1083 VAL1084 ASN1085 HIS1086 LYS1087 PRO1088 SER1089 ASN1090 THR1091 LYS1092 VAL1093 ASP1094 LYS1095 LYS1096 VAL1097 GLU1098 PRO1099 LYS1100 SER1101
Unit 2 VAL503 LEU504 THR505 GLN506 THR507 THR508 SER509 PRO510 VAL511 SER512 ALA513 ALA514 VAL515 GLY516 SER517 THR518 VAL519 THR520 ILE521 SER522 CYS523 GLN551 SER552 SER553 GLN556 SER561 VAL562 ARG571 THR581 ASN596 LYS597 LEU598 ALA599 TRP601 PHE602 GLN603 GLN604 LYS605 PRO606 GLY607 GLN608 PRO609 PRO610 LYS611 ARG612 LEU613 ILE614 TYR615 SER651 ALA694 SER695 THR696 LEU697 ASP698 PHE699 GLY701 VAL702 PRO703 SER704 ARG705 PHE706 SER707 ALA708 SER709 GLY710 SER711 GLY712 THR715 GLN716 PHE717 THR718 LEU719 THR720 ILE721 SER722 ASP723 VAL724 GLN725 CYS726 ASP727 ASP728 ALA729 ALA730 THR731 TYR732 TYR733 CYS734 LEU751 GLY752 TYR753 PHE754 ASP755 CYS756 SER757 ILE794 ALA795 ASP796 CYS797 VAL798 ALA799 PHE801 GLY802 GLY803 GLY804 THR805 GLU806 VAL807 VAL808 VAL809 LYS810 ARG2000 THR2001 VAL2002 ALA2003 ALA2004 PRO2005 SER2006 VAL2007 PHE2008 ILE2009 PHE2010 PRO2011 PRO2012 SER2013 ASP2014 GLU2015 GLN2016 LEU2017 LYS2018 SER2019 GLY2020 THR2021 ALA2022 SER2023 VAL2024 VAL2025 CYS2026 LEU2027 LEU2028 ASN2029 ASN2030 PHE2031 TYR2032 PRO2033 ARG2034 GLU2035 ALA2036 LYS2037 VAL2038 GLN2039 TRP2040 LYS2041 VAL2042 ASP2043 ASN2044 ALA2045 LEU2046 GLN2047 SER2048 GLY2049 ASN2050 SER2051 GLN2052 GLU2053 SER2054 VAL2055 THR2056 GLU2057 GLN2058 ASP2059 SER2060 LYS2061 ASP2062 SER2063 THR2064 TYR2065 SER2066 LEU2067 SER2068 SER2069 THR2070 LEU2071 THR2072 LEU2073 SER2074 LYS2075 ALA2076 ASP2077 TYR2078 GLU2079 LYS2080 HIS2081 LYS2082 VAL2083 TYR2084 ALA2085 CYS2086 GLU2087 VAL2088 THR2089 HIS2090 GLN2091 GLY2092 LEU2093 SER2094 SER2095 PRO2096 VAL2097 THR2098 LYS2099 SER2100 PHE2101 ASN2102 ARG2103 GLY2104 GLU2105
Unit 3 GLN102 SER103 VAL104 GLU105 GLU106 SER107 GLY108 GLY109 ARG110 LEU111 VAL112 THR113 PRO114 GLY115 THR116 PRO117 LEU118 THR119 LEU120 THR121 CYS122 THR123 VAL124 SER125 GLY151 PHE152 SER153 LEU154 SER155 SER156 ASN196 ALA197 ILE198 ASN199 TRP201 VAL202 ARG203 GLN204 ALA205 PRO206 GLY207 LYS208 GLY209 LEU210 GLU211 TRP212 ILE213 GLY214 TYR251 ILE252 ALA253 VAL254 SER288 GLY289 ASN290 THR291 TYR292 TYR293 ALA294 SER295 TRP296 ALA297 LYS298 GLY299 ARG301 PHE302 THR303 ILE304 SER305 LYS306 ALA307 SER308 THR311 THR312 VAL313 ASP314 LEU315 LYS316 MET317 THR318 SER319 PRO320 THR321 ALA322 GLU323 ASP324 THR325 GLY326 THR327 TYR328 PHE329 CYS330 GLY331 LYS332 SER351 ASN398 ILE399 TRP401 GLY402 PRO403 GLY404 THR405 LEU406 VAL407 THR408 VAL409 SER410 LEU411 ALA1000 SER1001 THR1002 LYS1003 GLY1004 PRO1005 SER1006 VAL1007 PHE1008 PRO1009 LEU1010 ALA1011 PRO1012 THR1021 ALA1022 ALA1023 LEU1024 GLY1025 CYS1026 LEU1027 VAL1028 LYS1029 ASP1030 TYR1031 PHE1032 PRO1033 GLU1034 PRO1035 VAL1036 THR1037 VAL1038 SER1039 TRP1040 ASN1041 SER1042 GLY1043 ALA1044 LEU1045 THR1046 SER1047 GLY1048 VAL1049 HIS1050 THR1051 PHE1052 PRO1053 ALA1054 VAL1055 LEU1056 GLN1057 SER1058 SER1059 GLY1060 LEU1061 TYR1062 SER1063 LEU1064 SER1065 SER1066 VAL1067 VAL1068 THR1069 VAL1070 PRO1071 SER1072 SER1073 SER1074 LEU1075 GLY1076 THR1077 GLN1078 THR1079 TYR1080 ILE1081 CYS1082 ASN1083 VAL1084 ASN1085 HIS1086 LYS1087 PRO1088 SER1089 ASN1090 THR1091 LYS1092 VAL1093 ASP1094 LYS1095 LYS1096 VAL1097 GLU1098 PRO1099 LYS1100 SER1101
Unit 4 GLN502 VAL503 LEU504 THR505 GLN506 THR507 THR508 SER509 PRO510 VAL511 SER512 ALA513 ALA514 VAL515 GLY516 SER517 THR518 VAL519 THR520 ILE521 SER522 CYS523 GLN551 SER552 SER553 GLN556 SER561 VAL562 ARG571 THR581 ASN596 LYS597 LEU598 ALA599 TRP601 PHE602 GLN603 GLN604 LYS605 PRO606 GLY607 GLN608 PRO609 PRO610 LYS611 ARG612 LEU613 ILE614 TYR615 SER651 ALA694 SER695 THR696 LEU697 ASP698 PHE699 GLY701 VAL702 PRO703 SER704 ARG705 PHE706 SER707 ALA708 SER709 GLY710 SER711 GLY712 THR715 GLN716 PHE717 THR718 LEU719 THR720 ILE721 SER722 ASP723 VAL724 GLN725 CYS726 ASP727 ASP728 ALA729 ALA730 THR731 TYR732 TYR733 CYS734 LEU751 GLY752 TYR753 PHE754 ASP755 CYS756 SER757 ILE794 ALA795 ASP796 CYS797 VAL798 ALA799 PHE801 GLY802 GLY803 GLY804 THR805 GLU806 VAL807 VAL808 VAL809 LYS810 ARG2000 THR2001 VAL2002 ALA2003 ALA2004 PRO2005 SER2006 VAL2007 PHE2008 ILE2009 PHE2010 PRO2011 PRO2012 SER2013 ASP2014 GLU2015 GLN2016 LEU2017 LYS2018 SER2019 GLY2020 THR2021 ALA2022 SER2023 VAL2024 VAL2025 CYS2026 LEU2027 LEU2028 ASN2029 ASN2030 PHE2031 TYR2032 PRO2033 ARG2034 GLU2035 ALA2036 LYS2037 VAL2038 GLN2039 TRP2040 LYS2041 VAL2042 ASP2043 ASN2044 ALA2045 LEU2046 GLN2047 SER2048 GLY2049 ASN2050 SER2051 GLN2052 GLU2053 SER2054 VAL2055 THR2056 GLU2057 GLN2058 ASP2059 SER2060 LYS2061 ASP2062 SER2063 THR2064 TYR2065 SER2066 LEU2067 SER2068 SER2069 THR2070 LEU2071 THR2072 LEU2073 SER2074 LYS2075 ALA2076 ASP2077 TYR2078 GLU2079 LYS2080 HIS2081 LYS2082 VAL2083 TYR2084 ALA2085 CYS2086 GLU2087 VAL2088 THR2089 HIS2090 GLN2091 GLY2092 LEU2093 SER2094 SER2095 PRO2096 VAL2097 THR2098 LYS2099 SER2100 PHE2101 ASN2102 ARG2103 GLY2104 GLU2105
Unit 5 GLN102 SER103 VAL104 GLU105 GLU106 SER107 GLY108 GLY109 ARG110 LEU111 VAL112 THR113 PRO114 GLY115 THR116 PRO117 LEU118 THR119 LEU120 THR121 CYS122 THR123 VAL124 SER125 GLY151 PHE152 SER153 LEU154 SER155 SER156 ASN196 ALA197 ILE198 ASN199 TRP201 VAL202 ARG203 GLN204 ALA205 PRO206 GLY207 LYS208 GLY209 LEU210 GLU211 TRP212 ILE213 GLY214 TYR251 ILE252 ALA253 VAL254 SER288 GLY289 ASN290 THR291 TYR292 TYR293 ALA294 SER295 TRP296 ALA297 LYS298 GLY299 ARG301 PHE302 THR303 ILE304 SER305 LYS306 ALA307 SER308 THR311 THR312 VAL313 ASP314 LEU315 LYS316 MET317 THR318 SER319 PRO320 THR321 ALA322 GLU323 ASP324 THR325 GLY326 THR327 TYR328 PHE329 CYS330 GLY331 LYS332 SER351 ASN398 ILE399 TRP401 GLY402 PRO403 GLY404 THR405 LEU406 VAL407 THR408 VAL409 SER410 LEU411 ALA1000 SER1001 THR1002 LYS1003 GLY1004 PRO1005 SER1006 VAL1007 PHE1008 PRO1009 LEU1010 ALA1011 PRO1012 THR1021 ALA1022 ALA1023 LEU1024 GLY1025 CYS1026 LEU1027 VAL1028 LYS1029 ASP1030 TYR1031 PHE1032 PRO1033 GLU1034 PRO1035 VAL1036 THR1037 VAL1038 SER1039 TRP1040 ASN1041 SER1042 GLY1043 ALA1044 LEU1045 THR1046 SER1047 GLY1048 VAL1049 HIS1050 THR1051 PHE1052 PRO1053 ALA1054 VAL1055 LEU1056 GLN1057 SER1058 SER1059 GLY1060 LEU1061 TYR1062 SER1063 LEU1064 SER1065 SER1066 VAL1067 VAL1068 THR1069 VAL1070 PRO1071 SER1072 SER1073 SER1074 LEU1075 GLN1078 THR1079 TYR1080 ILE1081 CYS1082 ASN1083 VAL1084 ASN1085 HIS1086 LYS1087 PRO1088 SER1089 ASN1090 THR1091 LYS1092 VAL1093 ASP1094 LYS1095 LYS1096 VAL1097 GLU1098 PRO1099
Unit 6 GLN502 VAL503 LEU504 THR505 GLN506 THR507 THR508 SER509 PRO510 VAL511 SER512 ALA513 ALA514 VAL515 GLY516 SER517 THR518 VAL519 THR520 ILE521 SER522 CYS523 GLN551 SER552 SER553 GLN556 SER561 VAL562 ARG571 THR581 ASN596 LYS597 LEU598 ALA599 TRP601 PHE602 GLN603 GLN604 LYS605 PRO606 GLY607 GLN608 PRO609 PRO610 LYS611 ARG612 LEU613 ILE614 TYR615 SER651 ALA694 SER695 THR696 LEU697 ASP698 PHE699 GLY701 VAL702 PRO703 SER704 ARG705 PHE706 SER707 ALA708 SER709 GLY710 SER711 GLY712 THR715 GLN716 PHE717 THR718 LEU719 THR720 ILE721 SER722 ASP723 VAL724 GLN725 CYS726 ASP727 ASP728 ALA729 ALA730 THR731 TYR732 TYR733 CYS734 LEU751 GLY752 TYR753 PHE754 ASP755 CYS756 SER757 ILE794 ALA795 ASP796 CYS797 VAL798 ALA799 PHE801 GLY802 GLY803 GLY804 THR805 GLU806 VAL807 VAL808 VAL809 LYS810 ARG2000 THR2001 VAL2002 ALA2003 ALA2004 PRO2005 SER2006 VAL2007 PHE2008 ILE2009 PHE2010 PRO2011 PRO2012 SER2013 ASP2014 GLU2015 GLN2016 LEU2017 LYS2018 SER2019 GLY2020 THR2021 ALA2022 SER2023 VAL2024 VAL2025 CYS2026 LEU2027 LEU2028 ASN2029 ASN2030 PHE2031 TYR2032 PRO2033 ARG2034 GLU2035 ALA2036 LYS2037 VAL2038 GLN2039 TRP2040 LYS2041 VAL2042 ASP2043 ASN2044 ALA2045 LEU2046 GLN2047 SER2048 GLY2049 ASN2050 SER2051 GLN2052 GLU2053 SER2054 VAL2055 THR2056 GLU2057 GLN2058 ASP2059 SER2060 LYS2061 ASP2062 SER2063 THR2064 TYR2065 SER2066 LEU2067 SER2068 SER2069 THR2070 LEU2071 THR2072 LEU2073 SER2074 LYS2075 ALA2076 ASP2077 TYR2078 GLU2079 LYS2080 HIS2081 LYS2082 VAL2083 TYR2084 ALA2085 CYS2086 GLU2087 VAL2088 THR2089 HIS2090 GLN2091 GLY2092 SER2095 PRO2096 VAL2097 THR2098 LYS2099 SER2100 PHE2101 ASN2102 ARG2103 GLY2104 GLU2105
Unit 7 VAL420 ASP421 SEP422 PRO423 GLN424 LEU425 ALA426 THR427 LEU428
Unit 8 MET419 VAL420 ASP421 SEP422 PRO423 GLN424 LEU425 ALA426 THR427 LEU428 ALA429 ASP430
Unit 9 MET419 VAL420 ASP421 SEP422 PRO423 GLN424 LEU425
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany