5DKY - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF GLUCOSIDASE II ALPHA SUBUNIT (DNJ-BOUND
• Keywords: ENDOPLASMIC RETICULUM, GLYCOSIDE HYDROLASE, GLYCOSYLATION, H
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5DKY	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	ALPHA GLUCOSIDASE-LIKE PROTEIN	A	928	7485	0
2	Ligand	ALPHA GLUCOSIDASE-LIKE PROTEIN	A	1	0	11
3	Water			819	0	819
total				1748	7485	830

Proteins

Unit 1

GLU 29 PHE 30 VAL 31 LYS 32 GLU 33 HIS 34 ASP 35 TRP 36 LYS 37 LYS 38 CYS 39 ASP 40 GLN 41 SER 42 GLY 43 PHE 44 CYS 45 ARG 46 ARG 47 ASN 48 ARG 49 ALA 50 TYR 51 ALA 52 ASP 53 HIS 54 ALA 55 LEU 56 SER 57 ALA 58 ILE 59 SER 60 TRP 61 GLU 62 SER 63 PRO 64 TYR 65 LYS 66 ILE 67 ALA 68 PRO 69 GLU 70 THR 71 GLY 72 SER 73 PHE 74 LYS 75 ASP 76 GLY 77 GLN 78 TYR 79 GLN 80 ALA 81 ILE 82 ILE 83 LEU 84 LYS 85 THR 86 ILE 87 ASN 88 ASP 89 HIS 90 GLY 91 GLU 92 THR 93 VAL 94 ARG 95 LEU 96 PRO 97 LEU 98 THR 99 VAL 100 SER 101 PHE 102 LEU 103 GLU 104 SER 105 GLY 106 THR 107 ALA 108 ARG 109 VAL 110 THR 111 ILE 112 ASP 113 GLU 114 GLU 115 LYS 116 ARG 117 GLN 118 LYS 119 GLY 120 GLU 121 ILE 122 GLU 123 LEU 124 ARG 125 HIS 126 ASP 127 SER 128 LYS 129 ALA 130 ARG 131 LYS 132 GLU 133 ARG 134 TYR 135 ASN 136 GLU 137 ALA 138 GLU 139 GLN 140 TRP 141 VAL 142 ILE 143 VAL 144 GLY 145 GLY 146 MET 147 THR 148 LEU 149 ASP 150 LYS 151 GLY 152 ALA 153 LYS 154 VAL 155 ASP 156 TYR 157 GLU 158 ASP 159 LYS 160 THR 161 GLN 162 MET 163 THR 164 VAL 165 LYS 166 TYR 167 GLY 168 PRO 169 SER 170 SER 171 LYS 172 PHE 173 GLU 174 ALA 175 THR 176 ILE 177 LYS 178 PHE 179 ALA 180 PRO 181 PHE 182 SER 183 ILE 184 ASP 185 PHE 186 LYS 187 ARG 188 ASP 189 GLY 190 ALA 191 SER 192 HIS 193 ILE 194 LYS 195 PHE 196 ASN 197 ASP 198 GLN 199 GLY 200 LEU 201 LEU 202 ASN 203 ILE 204 GLU 205 HIS 206 TRP 207 ARG 208 PRO 209 LYS 210 ILE 211 ASP 212 PRO 213 PRO 214 ASP 236 ASP 237 SER 238 THR 239 TRP 240 TRP 241 GLU 242 GLU 243 SER 244 PHE 245 GLY 246 GLY 247 ASN 248 THR 249 ASP 250 SER 251 LYS 252 PRO 253 ARG 254 GLY 255 PRO 256 GLU 257 SER 258 VAL 259 GLY 260 LEU 261 ASP 262 ILE 263 SER 264 PHE 265 VAL 266 GLY 267 TYR 268 GLU 269 HIS 270 VAL 271 PHE 272 GLY 273 ILE 274 PRO 275 SER 276 HIS 277 ALA 278 SER 279 PRO 280 LEU 281 SER 282 LEU 283 LYS 284 GLN 285 THR 286 ARG 287 GLY 288 GLY 289 GLU 290 GLY 291 ASN 292 TYR 293 ASN 294 GLU 295 PRO 296 TYR 297 ARG 298 MET 299 TYR 300 ASN 301 ALA 302 ASP 303 VAL 304 PHE 305 GLU 306 TYR 307 ILE 308 LEU 309 ASP 310 SER 311 PRO 312 MET 313 THR 314 LEU 315 TYR 316 GLY 317 SER 318 ILE 319 PRO 320 PHE 321 MET 322 GLN 323 ALA 324 HIS 325 ARG 326 LYS 327 ASP 328 SER 329 SER 330 VAL 331 GLY 332 ILE 333 PHE 334 TRP 335 LEU 336 ASN 337 ALA 338 ALA 339 GLU 340 THR 341 TRP 342 VAL 343 ASP 344 ILE 345 THR 346 LYS 347 GLY 348 LYS 349 ASP 350 SER 351 LYS 352 ASN 353 PRO 354 LEU 355 ALA 356 LEU 357 GLY 358 VAL 359 LYS 360 SER 361 LYS 362 ILE 363 THR 364 THR 365 ARG 366 THR 367 HIS 368 TRP 369 PHE 370 SER 371 GLU 372 SER 373 GLY 374 LEU 375 LEU 376 ASP 377 VAL 378 PHE 379 VAL 380 PHE 381 LEU 382 GLY 383 PRO 384 THR 385 PRO 386 LYS 387 ASP 388 ILE 389 ILE 390 SER 391 LYS 392 TYR 393 ALA 394 GLU 395 LEU 396 THR 397 GLY 398 THR 399 THR 400 ALA 401 MET 402 PRO 403 GLN 404 GLU 405 PHE 406 SER 407 LEU 408 GLY 409 TYR 410 HIS 411 GLN 412 CYS 413 ARG 414 TRP 415 ASN 416 TYR 417 VAL 418 SER 419 ASP 420 GLU 421 ASP 422 VAL 423 LYS 424 ASP 425 VAL 426 ASP 427 ARG 428 LYS 429 MET 430 ASP 431 LYS 432 PHE 433 ASN 434 MET 435 PRO 436 TYR 437 ASP 438 VAL 439 ILE 440 TRP 441 LEU 442 ASP 443 ILE 444 GLU 445 TYR 446 THR 447 ASP 448 GLU 449 LYS 450 LYS 451 TYR 452 PHE 453 THR 454 TRP 455 ASP 456 LYS 457 HIS 458 SER 459 PHE 460 LYS 461 ASP 462 PRO 463 ILE 464 GLY 465 MET 466 GLY 467 LYS 468 GLN 469 LEU 470 GLU 471 ALA 472 HIS 473 GLY 474 ARG 475 LYS 476 LEU 477 VAL 478 THR 479 ILE 480 ILE 481 ASP 482 PRO 483 HIS 484 ILE 485 LYS 486 ASN 487 THR 488 ASN 489 ASN 490 TYR 491 PRO 492 VAL 493 VAL 494 ASP 495 GLU 496 LEU 497 LYS 498 SER 499 LYS 500 ASP 501 LEU 502 ALA 503 VAL 504 LYS 505 THR 506 LYS 507 ASP 508 GLY 509 SER 510 ILE 511 PHE 512 GLU 513 GLY 514 TRP 515 CYS 516 TRP 517 PRO 518 GLY 519 SER 520 SER 521 HIS 522 TRP 523 ILE 524 ASP 525 ALA 526 PHE 527 ASN 528 PRO 529 ALA 530 ALA 531 ARG 532 GLU 533 TRP 534 TRP 535 LYS 536 GLY 537 LEU 538 PHE 539 LYS 540 TYR 541 ASP 542 LYS 543 PHE 544 LYS 545 GLY 546 THR 547 MET 548 GLU 549 ASN 550 THR 551 PHE 552 ILE 553 TRP 554 ASN 555 ASP 556 MET 557 ASN 558 GLU 559 PRO 560 SER 561 VAL 562 PHE 563 ASN 564 GLY 565 PRO 566 GLU 567 VAL 568 THR 569 MET 570 PRO 571 LYS 572 ASP 573 ASN 574 LEU 575 HIS 576 HIS 577 GLY 578 ASN 579 TRP 580 GLU 581 HIS 582 ARG 583 ASP 584 VAL 585 HIS 586 ASN 587 LEU 588 ASN 589 GLY 590 MET 591 THR 592 PHE 593 GLN 594 ASN 595 ALA 596 THR 597 TYR 598 HIS 599 ALA 600 LEU 601 LEU 602 SER 603 ARG 604 LYS 605 PRO 606 GLY 607 GLU 608 HIS 609 ARG 610 ARG 611 PRO 612 PHE 613 VAL 614 LEU 615 THR 616 ARG 617 ALA 618 PHE 619 PHE 620 ALA 621 GLY 622 SER 623 GLN 624 ARG 625 LEU 626 GLY 627 ALA 628 MET 629 TRP 630 THR 631 GLY 632 ASP 633 ASN 634 THR 635 ALA 636 ASP 637 TRP 638 GLY 639 TYR 640 LEU 641 LYS 642 ALA 643 SER 644 ILE 645 PRO 646 MET 647 VAL 648 LEU 649 SER 650 GLN 651 GLY 652 ILE 653 ALA 654 GLY 655 PHE 656 PRO 657 PHE 658 ALA 659 GLY 660 ALA 661 ASP 662 VAL 663 GLY 664 GLY 665 PHE 666 PHE 667 GLY 668 ASN 669 PRO 670 ASP 671 LYS 672 ASP 673 LEU 674 LEU 675 THR 676 ARG 677 TRP 678 TYR 679 GLN 680 THR 681 GLY 682 ILE 683 PHE 684 TYR 685 PRO 686 PHE 687 PHE 688 ARG 689 ALA 690 HIS 691 ALA 692 HIS 693 ILE 694 ASP 695 ALA 696 ARG 697 ARG 698 ARG 699 GLU 700 PRO 701 TYR 702 LEU 703 THR 704 GLY 705 GLU 706 PRO 707 TYR 708 ASN 709 THR 710 ILE 711 ILE 712 ALA 713 ALA 714 ALA 715 LEU 716 ARG 717 LEU 718 ARG 719 TYR 720 SER 721 LEU 722 LEU 723 PRO 724 SER 725 TRP 726 TYR 727 THR 728 ALA 729 PHE 730 ARG 731 HIS 732 ALA 733 HIS 734 LEU 735 ASP 736 GLY 737 THR 738 PRO 739 ILE 740 ILE 741 LYS 742 PRO 743 MET 744 PHE 745 TYR 746 THR 747 HIS 748 PRO 749 SER 750 GLU 751 GLU 752 ALA 753 GLY 754 LEU 755 PRO 756 ILE 757 ASP 758 ASP 759 GLN 760 PHE 761 PHE 762 ILE 763 GLY 764 ASN 765 THR 766 GLY 767 LEU 768 LEU 769 ALA 770 LYS 771 PRO 772 VAL 773 THR 774 ASP 775 LYS 776 ASP 777 ARG 778 THR 779 SER 780 VAL 781 ASP 782 ILE 783 TRP 784 ILE 785 PRO 786 ASP 787 SER 788 GLU 789 VAL 790 TYR 791 TYR 792 ASP 793 TYR 794 PHE 795 THR 796 TYR 797 ASP 798 ILE 799 ILE 800 SER 801 ALA 802 ALA 803 LYS 804 SER 805 LYS 806 THR 807 ALA 808 THR 809 LEU 810 ASP 811 ALA 812 PRO 813 LEU 814 GLU 815 LYS 816 ILE 817 PRO 818 LEU 819 LEU 820 MET 821 ARG 822 GLY 823 GLY 824 HIS 825 VAL 826 PHE 827 ALA 828 ARG 829 ARG 830 ASP 831 ILE 832 PRO 833 ARG 834 ARG 835 SER 836 SER 837 ALA 838 LEU 839 MET 840 LYS 841 TRP 842 ASP 843 PRO 844 TYR 845 THR 846 LEU 847 VAL 848 VAL 849 VAL 850 LEU 851 GLY 852 ASN 853 ASP 854 ARG 855 LYS 856 ALA 857 GLU 858 GLY 859 ASP 860 LEU 861 TYR 862 VAL 863 ASP 864 ASP 865 GLY 866 ASP 867 SER 868 PHE 869 ASP 870 TYR 871 GLU 872 LYS 873 GLY 874 GLN 875 TYR 876 ILE 877 HIS 878 ARG 879 ARG 880 PHE 881 ILE 882 PHE 883 ASP 884 ALA 885 ASN 886 THR 887 LEU 888 THR 889 SER 890 ALA 891 ASP 892 TYR 893 GLU 894 GLY 895 ARG 896 ASP 897 ASP 898 ALA 899 SER 900 ILE 901 LYS 902 GLU 903 GLY 904 GLU 905 TRP 906 LEU 907 LYS 908 LYS 909 MET 910 ARG 911 THR 912 VAL 913 ASN 914 VAL 915 GLU 916 LYS 917 ILE 918 ILE 919 VAL 920 VAL 921 GLY 922 ALA 923 PRO 924 ALA 925 ALA 926 TRP 927 LYS 928 GLY 929 LYS 930 LYS 931 THR 932 VAL 933 THR 934 VAL 935 GLU 936 SER 937 GLU 938 GLY 939 LYS 940 THR 941 TRP 942 ALA 943 ALA 944 ALA 945 ILE 946 GLU 947 TYR 948 ASN 949 PRO 950 ALA 951 GLU 952 LYS 953 SER 954 ARG 955 ALA 956 ALA 957 PHE 958 ALA 959 VAL 960 VAL 961 LYS 962 LYS 963 VAL 964 GLY 965 VAL 966 ARG 967 VAL 968 GLY 969 ALA 970 ASP 971 PHE 972 LYS 973 ILE 974 VAL 975 PHE 976 GLY 977

Ligands

Unit 2

NOJ 1000