5DJ3 - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURE OF THE PLP-DEPENDENT L-ARGININE HYDROXYLASE MPPP W ARGININE BOUND
• Keywords: AMINOTRANSFERASE, HYDROXYLASE, ENDURACIDIDINE, PYRIDOXAL 5'- PHOSPHATE, TRANSFERASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5DJ3	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	PLP-DEPENDENT L-ARGININE HYDROXYLASE MPPP	A	351	5360	0
2	Protein	PLP-DEPENDENT L-ARGININE HYDROXYLASE MPPP	B	351	5360	0
3	Protein	PLP-DEPENDENT L-ARGININE HYDROXYLASE MPPP	C	351	5360	0
4	Protein	PLP-DEPENDENT L-ARGININE HYDROXYLASE MPPP	D	351	5360	0
5	Ligand	PLP-DEPENDENT L-ARGININE HYDROXYLASE MPPP	A	1	0	27
6	Ligand	PLP-DEPENDENT L-ARGININE HYDROXYLASE MPPP	B	2	0	28
7	Ligand	PLP-DEPENDENT L-ARGININE HYDROXYLASE MPPP	C	1	0	27
8	Ligand	PLP-DEPENDENT L-ARGININE HYDROXYLASE MPPP	D	1	0	27
9	Water			684	0	684
total				2093	21440	793

Proteins

Unit 1	LEU 23 ASN 24 ILE 25 ALA 26 ASP 27 GLY 28 HIS 29 ALA 30 ARG 31 GLN 32 ALA 33 LEU 34 SER 35 PRO 36 GLY 37 GLN 38 GLN 39 LYS 40 ILE 41 VAL 42 ASN 43 GLU 44 LEU 45 PRO 46 VAL 47 LEU 48 TRP 49 ALA 50 GLU 51 SER 52 GLU 53 GLN 54 ARG 55 PRO 56 VAL 57 GLN 58 GLN 59 ILE 60 GLU 61 SER 62 GLU 63 ALA 64 HIS 65 GLN 66 ALA 67 TYR 68 PHE 69 THR 70 LEU 71 LEU 72 GLY 73 GLN 74 HIS 75 GLY 76 TYR 77 PRO 78 ALA 79 GLU 80 PRO 81 GLY 82 ARG 83 VAL 84 LEU 85 SER 86 CYS 87 TYR 88 SER 89 SER 90 SER 91 VAL 92 SER 93 MET 94 GLU 95 ILE 96 LEU 97 ALA 98 ARG 99 SER 100 LEU 101 SER 102 ALA 103 SER 104 VAL 105 ASP 106 ARG 107 VAL 108 ALA 109 LEU 110 VAL 111 HIS 112 PRO 113 THR 114 PHE 115 ASP 116 ASN 117 ILE 118 ALA 119 ASP 120 LEU 121 LEU 122 ARG 123 GLY 124 ASN 125 GLY 126 LEU 127 ASP 128 LEU 129 VAL 130 PRO 131 VAL 132 GLU 133 GLU 134 ASP 135 ALA 136 LEU 137 HIS 138 GLY 139 ALA 140 ASP 141 LEU 142 SER 143 ALA 144 GLU 145 LEU 146 LEU 147 SER 148 SER 149 VAL 150 GLY 151 CYS 152 VAL 153 PHE 154 VAL 155 THR 156 THR 157 PRO 158 ASN 159 ASN 160 PRO 161 THR 162 GLY 163 ARG 164 VAL 165 LEU 166 ALA 167 GLU 168 GLU 169 ARG 170 LEU 171 ARG 172 ARG 173 LEU 174 ALA 175 GLU 176 GLN 177 CYS 178 ALA 179 GLU 180 HIS 181 GLY 182 THR 183 VAL 184 LEU 185 ALA 186 LEU 187 ASP 188 THR 189 SER 190 PHE 191 ARG 192 GLY 193 PHE 194 ASP 195 ALA 196 ALA 197 ALA 198 HIS 199 TYR 200 ASP 201 HIS 202 TYR 203 ALA 204 VAL 205 LEU 206 GLN 207 GLU 208 ALA 209 GLY 210 CYS 211 ARG 212 TRP 213 VAL 214 VAL 215 ILE 216 GLU 217 ASP 218 THR 219 GLY 220 LYS 221 LEU 222 TRP 223 PRO 224 THR 225 LEU 226 ASP 227 LEU 228 LYS 229 ALA 230 GLY 231 LEU 232 LEU 233 VAL 234 PHE 235 SER 236 GLU 237 ASP 238 ILE 239 GLY 240 LEU 241 PRO 242 VAL 243 GLU 244 LYS 245 ILE 246 TYR 247 SER 248 ASP 249 ILE 250 LEU 251 LEU 252 GLY 253 VAL 254 SER 255 PRO 256 LEU 257 ILE 258 LEU 259 ALA 260 LEU 261 ILE 262 ARG 263 GLU 264 PHE 265 SER 266 ARG 267 ASP 268 ALA 269 ALA 270 ASP 271 GLY 272 GLY 273 LEU 274 ALA 275 ASP 276 LEU 277 HIS 278 ALA 279 PHE 280 ILE 281 LEU 282 HIS 283 ASN 284 ARG 285 SER 286 VAL 287 VAL 288 ARG 289 ARG 290 ALA 291 LEU 292 ALA 293 GLY 294 VAL 295 GLU 296 GLY 297 VAL 298 SER 299 PHE 300 PRO 301 ASP 302 PRO 303 GLU 304 SER 305 ARG 306 SER 307 SER 308 VAL 309 GLU 310 ARG 311 VAL 312 ALA 313 PHE 314 ALA 315 GLY 316 ARG 317 THR 318 GLY 319 THR 320 GLU 321 VAL 322 TRP 323 GLU 324 GLU 325 LEU 326 GLN 327 ARG 328 HIS 329 HIS 330 VAL 331 PHE 332 ALA 333 LEU 334 PRO 335 CYS 336 ARG 337 GLN 338 PHE 339 HIS 340 TRP 341 ALA 342 GLU 343 PRO 344 SER 345 ASP 346 GLY 347 ASP 348 HIS 349 MET 350 VAL 351 ARG 352 ILE 353 ALA 354 LEU 355 SER 356 ARG 357 SER 358 THR 359 GLU 360 PRO 361 LEU 362 GLU 363 LYS 364 SER 365 VAL 366 GLN 367 VAL 368 LEU 369 ARG 370 THR 371 VAL 372 LEU 373
Unit 2	LEU 23 ASN 24 ILE 25 ALA 26 ASP 27 GLY 28 HIS 29 ALA 30 ARG 31 GLN 32 ALA 33 LEU 34 SER 35 PRO 36 GLY 37 GLN 38 GLN 39 LYS 40 ILE 41 VAL 42 ASN 43 GLU 44 LEU 45 PRO 46 VAL 47 LEU 48 TRP 49 ALA 50 GLU 51 SER 52 GLU 53 GLN 54 ARG 55 PRO 56 VAL 57 GLN 58 GLN 59 ILE 60 GLU 61 SER 62 GLU 63 ALA 64 HIS 65 GLN 66 ALA 67 TYR 68 PHE 69 THR 70 LEU 71 LEU 72 GLY 73 GLN 74 HIS 75 GLY 76 TYR 77 PRO 78 ALA 79 GLU 80 PRO 81 GLY 82 ARG 83 VAL 84 LEU 85 SER 86 CYS 87 TYR 88 SER 89 SER 90 SER 91 VAL 92 SER 93 MET 94 GLU 95 ILE 96 LEU 97 ALA 98 ARG 99 SER 100 LEU 101 SER 102 ALA 103 SER 104 VAL 105 ASP 106 ARG 107 VAL 108 ALA 109 LEU 110 VAL 111 HIS 112 PRO 113 THR 114 PHE 115 ASP 116 ASN 117 ILE 118 ALA 119 ASP 120 LEU 121 LEU 122 ARG 123 GLY 124 ASN 125 GLY 126 LEU 127 ASP 128 LEU 129 VAL 130 PRO 131 VAL 132 GLU 133 GLU 134 ASP 135 ALA 136 LEU 137 HIS 138 GLY 139 ALA 140 ASP 141 LEU 142 SER 143 ALA 144 GLU 145 LEU 146 LEU 147 SER 148 SER 149 VAL 150 GLY 151 CYS 152 VAL 153 PHE 154 VAL 155 THR 156 THR 157 PRO 158 ASN 159 ASN 160 PRO 161 THR 162 GLY 163 ARG 164 VAL 165 LEU 166 ALA 167 GLU 168 GLU 169 ARG 170 LEU 171 ARG 172 ARG 173 LEU 174 ALA 175 GLU 176 GLN 177 CYS 178 ALA 179 GLU 180 HIS 181 GLY 182 THR 183 VAL 184 LEU 185 ALA 186 LEU 187 ASP 188 THR 189 SER 190 PHE 191 ARG 192 GLY 193 PHE 194 ASP 195 ALA 196 ALA 197 ALA 198 HIS 199 TYR 200 ASP 201 HIS 202 TYR 203 ALA 204 VAL 205 LEU 206 GLN 207 GLU 208 ALA 209 GLY 210 CYS 211 ARG 212 TRP 213 VAL 214 VAL 215 ILE 216 GLU 217 ASP 218 THR 219 GLY 220 LYS 221 LEU 222 TRP 223 PRO 224 THR 225 LEU 226 ASP 227 LEU 228 LYS 229 ALA 230 GLY 231 LEU 232 LEU 233 VAL 234 PHE 235 SER 236 GLU 237 ASP 238 ILE 239 GLY 240 LEU 241 PRO 242 VAL 243 GLU 244 LYS 245 ILE 246 TYR 247 SER 248 ASP 249 ILE 250 LEU 251 LEU 252 GLY 253 VAL 254 SER 255 PRO 256 LEU 257 ILE 258 LEU 259 ALA 260 LEU 261 ILE 262 ARG 263 GLU 264 PHE 265 SER 266 ARG 267 ASP 268 ALA 269 ALA 270 ASP 271 GLY 272 GLY 273 LEU 274 ALA 275 ASP 276 LEU 277 HIS 278 ALA 279 PHE 280 ILE 281 LEU 282 HIS 283 ASN 284 ARG 285 SER 286 VAL 287 VAL 288 ARG 289 ARG 290 ALA 291 LEU 292 ALA 293 GLY 294 VAL 295 GLU 296 GLY 297 VAL 298 SER 299 PHE 300 PRO 301 ASP 302 PRO 303 GLU 304 SER 305 ARG 306 SER 307 SER 308 VAL 309 GLU 310 ARG 311 VAL 312 ALA 313 PHE 314 ALA 315 GLY 316 ARG 317 THR 318 GLY 319 THR 320 GLU 321 VAL 322 TRP 323 GLU 324 GLU 325 LEU 326 GLN 327 ARG 328 HIS 329 HIS 330 VAL 331 PHE 332 ALA 333 LEU 334 PRO 335 CYS 336 ARG 337 GLN 338 PHE 339 HIS 340 TRP 341 ALA 342 GLU 343 PRO 344 SER 345 ASP 346 GLY 347 ASP 348 HIS 349 MET 350 VAL 351 ARG 352 ILE 353 ALA 354 LEU 355 SER 356 ARG 357 SER 358 THR 359 GLU 360 PRO 361 LEU 362 GLU 363 LYS 364 SER 365 VAL 366 GLN 367 VAL 368 LEU 369 ARG 370 THR 371 VAL 372 LEU 373
Unit 3	LEU 23 ASN 24 ILE 25 ALA 26 ASP 27 GLY 28 HIS 29 ALA 30 ARG 31 GLN 32 ALA 33 LEU 34 SER 35 PRO 36 GLY 37 GLN 38 GLN 39 LYS 40 ILE 41 VAL 42 ASN 43 GLU 44 LEU 45 PRO 46 VAL 47 LEU 48 TRP 49 ALA 50 GLU 51 SER 52 GLU 53 GLN 54 ARG 55 PRO 56 VAL 57 GLN 58 GLN 59 ILE 60 GLU 61 SER 62 GLU 63 ALA 64 HIS 65 GLN 66 ALA 67 TYR 68 PHE 69 THR 70 LEU 71 LEU 72 GLY 73 GLN 74 HIS 75 GLY 76 TYR 77 PRO 78 ALA 79 GLU 80 PRO 81 GLY 82 ARG 83 VAL 84 LEU 85 SER 86 CYS 87 TYR 88 SER 89 SER 90 SER 91 VAL 92 SER 93 MET 94 GLU 95 ILE 96 LEU 97 ALA 98 ARG 99 SER 100 LEU 101 SER 102 ALA 103 SER 104 VAL 105 ASP 106 ARG 107 VAL 108 ALA 109 LEU 110 VAL 111 HIS 112 PRO 113 THR 114 PHE 115 ASP 116 ASN 117 ILE 118 ALA 119 ASP 120 LEU 121 LEU 122 ARG 123 GLY 124 ASN 125 GLY 126 LEU 127 ASP 128 LEU 129 VAL 130 PRO 131 VAL 132 GLU 133 GLU 134 ASP 135 ALA 136 LEU 137 HIS 138 GLY 139 ALA 140 ASP 141 LEU 142 SER 143 ALA 144 GLU 145 LEU 146 LEU 147 SER 148 SER 149 VAL 150 GLY 151 CYS 152 VAL 153 PHE 154 VAL 155 THR 156 THR 157 PRO 158 ASN 159 ASN 160 PRO 161 THR 162 GLY 163 ARG 164 VAL 165 LEU 166 ALA 167 GLU 168 GLU 169 ARG 170 LEU 171 ARG 172 ARG 173 LEU 174 ALA 175 GLU 176 GLN 177 CYS 178 ALA 179 GLU 180 HIS 181 GLY 182 THR 183 VAL 184 LEU 185 ALA 186 LEU 187 ASP 188 THR 189 SER 190 PHE 191 ARG 192 GLY 193 PHE 194 ASP 195 ALA 196 ALA 197 ALA 198 HIS 199 TYR 200 ASP 201 HIS 202 TYR 203 ALA 204 VAL 205 LEU 206 GLN 207 GLU 208 ALA 209 GLY 210 CYS 211 ARG 212 TRP 213 VAL 214 VAL 215 ILE 216 GLU 217 ASP 218 THR 219 GLY 220 LYS 221 LEU 222 TRP 223 PRO 224 THR 225 LEU 226 ASP 227 LEU 228 LYS 229 ALA 230 GLY 231 LEU 232 LEU 233 VAL 234 PHE 235 SER 236 GLU 237 ASP 238 ILE 239 GLY 240 LEU 241 PRO 242 VAL 243 GLU 244 LYS 245 ILE 246 TYR 247 SER 248 ASP 249 ILE 250 LEU 251 LEU 252 GLY 253 VAL 254 SER 255 PRO 256 LEU 257 ILE 258 LEU 259 ALA 260 LEU 261 ILE 262 ARG 263 GLU 264 PHE 265 SER 266 ARG 267 ASP 268 ALA 269 ALA 270 ASP 271 GLY 272 GLY 273 LEU 274 ALA 275 ASP 276 LEU 277 HIS 278 ALA 279 PHE 280 ILE 281 LEU 282 HIS 283 ASN 284 ARG 285 SER 286 VAL 287 VAL 288 ARG 289 ARG 290 ALA 291 LEU 292 ALA 293 GLY 294 VAL 295 GLU 296 GLY 297 VAL 298 SER 299 PHE 300 PRO 301 ASP 302 PRO 303 GLU 304 SER 305 ARG 306 SER 307 SER 308 VAL 309 GLU 310 ARG 311 VAL 312 ALA 313 PHE 314 ALA 315 GLY 316 ARG 317 THR 318 GLY 319 THR 320 GLU 321 VAL 322 TRP 323 GLU 324 GLU 325 LEU 326 GLN 327 ARG 328 HIS 329 HIS 330 VAL 331 PHE 332 ALA 333 LEU 334 PRO 335 CYS 336 ARG 337 GLN 338 PHE 339 HIS 340 TRP 341 ALA 342 GLU 343 PRO 344 SER 345 ASP 346 GLY 347 ASP 348 HIS 349 MET 350 VAL 351 ARG 352 ILE 353 ALA 354 LEU 355 SER 356 ARG 357 SER 358 THR 359 GLU 360 PRO 361 LEU 362 GLU 363 LYS 364 SER 365 VAL 366 GLN 367 VAL 368 LEU 369 ARG 370 THR 371 VAL 372 LEU 373
Unit 4	LEU 23 ASN 24 ILE 25 ALA 26 ASP 27 GLY 28 HIS 29 ALA 30 ARG 31 GLN 32 ALA 33 LEU 34 SER 35 PRO 36 GLY 37 GLN 38 GLN 39 LYS 40 ILE 41 VAL 42 ASN 43 GLU 44 LEU 45 PRO 46 VAL 47 LEU 48 TRP 49 ALA 50 GLU 51 SER 52 GLU 53 GLN 54 ARG 55 PRO 56 VAL 57 GLN 58 GLN 59 ILE 60 GLU 61 SER 62 GLU 63 ALA 64 HIS 65 GLN 66 ALA 67 TYR 68 PHE 69 THR 70 LEU 71 LEU 72 GLY 73 GLN 74 HIS 75 GLY 76 TYR 77 PRO 78 ALA 79 GLU 80 PRO 81 GLY 82 ARG 83 VAL 84 LEU 85 SER 86 CYS 87 TYR 88 SER 89 SER 90 SER 91 VAL 92 SER 93 MET 94 GLU 95 ILE 96 LEU 97 ALA 98 ARG 99 SER 100 LEU 101 SER 102 ALA 103 SER 104 VAL 105 ASP 106 ARG 107 VAL 108 ALA 109 LEU 110 VAL 111 HIS 112 PRO 113 THR 114 PHE 115 ASP 116 ASN 117 ILE 118 ALA 119 ASP 120 LEU 121 LEU 122 ARG 123 GLY 124 ASN 125 GLY 126 LEU 127 ASP 128 LEU 129 VAL 130 PRO 131 VAL 132 GLU 133 GLU 134 ASP 135 ALA 136 LEU 137 HIS 138 GLY 139 ALA 140 ASP 141 LEU 142 SER 143 ALA 144 GLU 145 LEU 146 LEU 147 SER 148 SER 149 VAL 150 GLY 151 CYS 152 VAL 153 PHE 154 VAL 155 THR 156 THR 157 PRO 158 ASN 159 ASN 160 PRO 161 THR 162 GLY 163 ARG 164 VAL 165 LEU 166 ALA 167 GLU 168 GLU 169 ARG 170 LEU 171 ARG 172 ARG 173 LEU 174 ALA 175 GLU 176 GLN 177 CYS 178 ALA 179 GLU 180 HIS 181 GLY 182 THR 183 VAL 184 LEU 185 ALA 186 LEU 187 ASP 188 THR 189 SER 190 PHE 191 ARG 192 GLY 193 PHE 194 ASP 195 ALA 196 ALA 197 ALA 198 HIS 199 TYR 200 ASP 201 HIS 202 TYR 203 ALA 204 VAL 205 LEU 206 GLN 207 GLU 208 ALA 209 GLY 210 CYS 211 ARG 212 TRP 213 VAL 214 VAL 215 ILE 216 GLU 217 ASP 218 THR 219 GLY 220 LYS 221 LEU 222 TRP 223 PRO 224 THR 225 LEU 226 ASP 227 LEU 228 LYS 229 ALA 230 GLY 231 LEU 232 LEU 233 VAL 234 PHE 235 SER 236 GLU 237 ASP 238 ILE 239 GLY 240 LEU 241 PRO 242 VAL 243 GLU 244 LYS 245 ILE 246 TYR 247 SER 248 ASP 249 ILE 250 LEU 251 LEU 252 GLY 253 VAL 254 SER 255 PRO 256 LEU 257 ILE 258 LEU 259 ALA 260 LEU 261 ILE 262 ARG 263 GLU 264 PHE 265 SER 266 ARG 267 ASP 268 ALA 269 ALA 270 ASP 271 GLY 272 GLY 273 LEU 274 ALA 275 ASP 276 LEU 277 HIS 278 ALA 279 PHE 280 ILE 281 LEU 282 HIS 283 ASN 284 ARG 285 SER 286 VAL 287 VAL 288 ARG 289 ARG 290 ALA 291 LEU 292 ALA 293 GLY 294 VAL 295 GLU 296 GLY 297 VAL 298 SER 299 PHE 300 PRO 301 ASP 302 PRO 303 GLU 304 SER 305 ARG 306 SER 307 SER 308 VAL 309 GLU 310 ARG 311 VAL 312 ALA 313 PHE 314 ALA 315 GLY 316 ARG 317 THR 318 GLY 319 THR 320 GLU 321 VAL 322 TRP 323 GLU 324 GLU 325 LEU 326 GLN 327 ARG 328 HIS 329 HIS 330 VAL 331 PHE 332 ALA 333 LEU 334 PRO 335 CYS 336 ARG 337 GLN 338 PHE 339 HIS 340 TRP 341 ALA 342 GLU 343 PRO 344 SER 345 ASP 346 GLY 347 ASP 348 HIS 349 MET 350 VAL 351 ARG 352 ILE 353 ALA 354 LEU 355 SER 356 ARG 357 SER 358 THR 359 GLU 360 PRO 361 LEU 362 GLU 363 LYS 364 SER 365 VAL 366 GLN 367 VAL 368 LEU 369 ARG 370 THR 371 VAL 372 LEU 373

Ligands

Unit 5	5DK 500
Unit 6	5DK 401 MG 402
Unit 7	5DK 500
Unit 8	5DK 500