5DHT - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF NAD KINASE 1 FROM LISTERIA MONOCYTOGENE COMPLEX WITH A NOVEL INHIBITOR
• Keywords: TETRAMERIC NAD KINASE, TRANSFERASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5DHT	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	NAD KINASE 1	A	263	2065	0
2	Protein	NAD KINASE 1	B	259	2069	0
3	Protein	NAD KINASE 1	C	260	2020	0
4	Protein	NAD KINASE 1	D	250	1955	0
5	Ligand	NAD KINASE 1	A	3	0	54
6	Ligand	NAD KINASE 1	B	2	0	48
7	Ligand	NAD KINASE 1	C	1	0	35
8	Ligand	NAD KINASE 1	D	2	0	41
9	Water			188	0	188
total				1228	8109	366

Proteins

Unit 1	MET 1 LYS 2 TYR 3 MET 4 ILE 5 THR 6 SER 7 LYS 8 GLY 9 ASP 10 GLU 11 LYS 12 SER 13 ASP 14 LEU 15 LEU 16 ARG 17 LEU 18 ASN 19 MET 20 ILE 21 ALA 22 GLY 23 PHE 24 GLY 25 GLU 26 TYR 27 ASP 28 MET 29 GLU 30 TYR 31 ASP 32 ASP 33 VAL 34 GLU 35 PRO 36 GLU 37 ILE 38 VAL 39 ILE 40 SER 41 ILE 42 GLY 43 GLY 44 ASP 45 GLY 46 THR 47 PHE 48 LEU 49 SER 50 ALA 51 PHE 52 HIS 53 GLN 54 TYR 55 GLU 56 GLU 57 ARG 58 LEU 59 ASP 60 GLU 61 ILE 62 ALA 63 PHE 64 ILE 65 GLY 66 ILE 67 HIS 68 THR 69 GLY 70 HIS 71 LEU 72 GLY 73 PHE 74 TYR 75 ALA 76 ASP 77 TRP 78 ARG 79 PRO 80 ALA 81 GLU 82 ALA 83 ASP 84 LYS 85 LEU 86 VAL 87 LYS 88 LEU 89 LEU 90 ALA 91 LYS 92 GLY 93 GLU 94 TYR 95 GLN 96 LYS 97 VAL 98 SER 99 TYR 100 PRO 101 LEU 102 LEU 103 LYS 104 THR 105 THR 106 VAL 107 LYS 108 TYR 109 GLY 110 ILE 111 LYS 113 LYS 114 GLU 115 ALA 116 THR 117 TYR 118 LEU 119 ALA 120 LEU 121 ASN 122 GLU 123 SER 124 THR 125 VAL 126 LYS 127 SER 128 SER 129 GLY 130 GLY 131 PRO 132 PHE 133 VAL 134 VAL 135 ASP 136 VAL 137 VAL 138 ILE 139 ASN 140 ASP 141 ILE 142 HIS 143 PHE 144 GLU 145 ARG 146 PHE 147 ARG 148 GLY 149 ASP 150 GLY 151 LEU 152 CYS 153 MET 154 SER 155 THR 156 PRO 157 SER 158 GLY 159 THR 160 THR 161 ALA 162 TYR 163 ASN 164 LYS 165 SER 166 LEU 167 GLY 168 GLY 169 ALA 170 LEU 171 MET 172 HIS 173 PRO 174 SER 175 ILE 176 GLU 177 ALA 178 MET 179 GLN 180 LEU 181 THR 182 GLU 183 MET 184 ALA 185 SER 186 ILE 187 ASN 188 ASN 189 ARG 190 VAL 191 TYR 192 ARG 193 THR 194 ILE 195 GLY 196 SER 197 PRO 198 LEU 199 VAL 200 PHE 201 PRO 202 LYS 203 HIS 204 HIS 205 VAL 206 VAL 207 SER 208 LEU 209 GLN 210 PRO 211 VAL 212 ASN 213 ASP 214 LYS 215 ASP 216 PHE 217 GLN 218 ILE 219 SER 220 VAL 221 ASP 222 HIS 223 LEU 224 SER 225 ILE 226 LEU 227 HIS 228 ARG 229 ASP 230 VAL 231 GLN 232 GLU 233 ILE 234 ARG 235 TYR 236 GLU 237 VAL 238 SER 239 ALA 240 LYS 241 LYS 242 ILE 243 HIS 244 PHE 245 ALA 246 ARG 247 PHE 248 ARG 249 SER 250 PHE 251 PRO 252 PHE 253 TRP 254 ARG 255 ARG 256 VAL 257 HIS 258 ASP 259 SER 260 PHE 261 ILE 262 GLU 263 ASP 264
Unit 2	MET 1 LYS 2 TYR 3 MET 4 ILE 5 THR 6 SER 7 LYS 8 GLY 9 ASP 10 GLU 11 LYS 12 SER 13 ASP 14 LEU 15 LEU 16 ARG 17 LEU 18 ASN 19 MET 20 ILE 21 ALA 22 GLY 23 PHE 24 GLY 25 GLU 26 TYR 27 ASP 28 MET 29 GLU 30 TYR 31 ASP 32 ASP 33 VAL 34 GLU 35 PRO 36 GLU 37 ILE 38 VAL 39 ILE 40 SER 41 ILE 42 GLY 43 GLY 44 ASP 45 GLY 46 THR 47 PHE 48 LEU 49 SER 50 ALA 51 PHE 52 HIS 53 GLN 54 TYR 55 GLU 56 GLU 57 ARG 58 LEU 59 ASP 60 GLU 61 ILE 62 ALA 63 PHE 64 ILE 65 GLY 66 ILE 67 HIS 68 THR 69 GLY 70 HIS 71 LEU 72 GLY 73 PHE 74 TYR 75 ALA 76 ASP 77 TRP 78 ARG 79 PRO 80 ALA 81 GLU 82 ALA 83 ASP 84 LYS 85 LEU 86 VAL 87 LYS 88 LEU 89 LEU 90 ALA 91 TYR 95 GLN 96 LYS 97 VAL 98 SER 99 TYR 100 PRO 101 LEU 102 LEU 103 LYS 104 THR 105 THR 106 VAL 107 LYS 108 TYR 109 GLU 115 ALA 116 THR 117 TYR 118 LEU 119 ALA 120 LEU 121 ASN 122 GLU 123 SER 124 THR 125 VAL 126 LYS 127 SER 128 SER 129 GLY 130 GLY 131 PRO 132 PHE 133 VAL 134 VAL 135 ASP 136 VAL 137 VAL 138 ILE 139 ASN 140 ASP 141 ILE 142 HIS 143 PHE 144 GLU 145 ARG 146 PHE 147 ARG 148 GLY 149 ASP 150 GLY 151 LEU 152 CYS 153 MET 154 SER 155 THR 156 PRO 157 SER 158 GLY 159 THR 160 THR 161 ALA 162 TYR 163 ASN 164 LYS 165 SER 166 LEU 167 GLY 168 GLY 169 ALA 170 LEU 171 MET 172 HIS 173 PRO 174 SER 175 ILE 176 GLU 177 ALA 178 MET 179 GLN 180 LEU 181 THR 182 GLU 183 MET 184 ALA 185 SER 186 ILE 187 ASN 188 ASN 189 ARG 190 VAL 191 TYR 192 ARG 193 THR 194 ILE 195 GLY 196 SER 197 PRO 198 LEU 199 VAL 200 PHE 201 PRO 202 LYS 203 HIS 204 HIS 205 VAL 206 VAL 207 SER 208 LEU 209 GLN 210 PRO 211 VAL 212 ASN 213 ASP 214 LYS 215 ASP 216 PHE 217 GLN 218 ILE 219 SER 220 VAL 221 ASP 222 HIS 223 LEU 224 SER 225 ILE 226 LEU 227 HIS 228 ARG 229 ASP 230 VAL 231 GLN 232 GLU 233 ILE 234 ARG 235 TYR 236 GLU 237 VAL 238 SER 239 ALA 240 LYS 241 LYS 242 ILE 243 HIS 244 PHE 245 ALA 246 ARG 247 PHE 248 ARG 249 SER 250 PHE 251 PRO 252 PHE 253 TRP 254 ARG 255 ARG 256 VAL 257 HIS 258 ASP 259 SER 260 PHE 261 ILE 262 GLU 263 ASP 264 LEU 265 GLU 266 HIS 267
Unit 3	MET 1 LYS 2 TYR 3 MET 4 ILE 5 THR 6 SER 7 LYS 8 GLY 9 ASP 10 GLU 11 LYS 12 SER 13 ASP 14 LEU 15 LEU 16 ARG 17 LEU 18 ASN 19 MET 20 ILE 21 ALA 22 GLY 23 PHE 24 GLY 25 TYR 27 ASP 28 MET 29 GLU 30 TYR 31 ASP 32 ASP 33 VAL 34 GLU 35 PRO 36 GLU 37 ILE 38 VAL 39 ILE 40 SER 41 ILE 42 GLY 43 GLY 44 ASP 45 GLY 46 THR 47 PHE 48 LEU 49 SER 50 ALA 51 PHE 52 HIS 53 GLN 54 TYR 55 GLU 56 GLU 57 ARG 58 LEU 59 ASP 60 GLU 61 ILE 62 ALA 63 PHE 64 ILE 65 GLY 66 ILE 67 HIS 68 THR 69 GLY 70 HIS 71 LEU 72 GLY 73 PHE 74 TYR 75 ALA 76 ASP 77 TRP 78 ARG 79 PRO 80 ALA 81 GLU 82 ALA 83 ASP 84 LYS 85 LEU 86 VAL 87 LYS 88 LEU 89 LEU 90 ALA 91 LYS 92 GLY 93 GLU 94 TYR 95 GLN 96 LYS 97 VAL 98 SER 99 TYR 100 PRO 101 LEU 102 LEU 103 LYS 104 THR 105 THR 106 VAL 107 LYS 108 TYR 109 GLY 110 LYS 113 LYS 114 GLU 115 ALA 116 THR 117 TYR 118 LEU 119 ALA 120 LEU 121 ASN 122 GLU 123 SER 124 THR 125 VAL 126 LYS 127 SER 128 SER 129 GLY 130 GLY 131 PRO 132 PHE 133 VAL 134 VAL 135 ASP 136 VAL 137 VAL 138 ILE 139 ASN 140 ASP 141 ILE 142 HIS 143 PHE 144 GLU 145 ARG 146 PHE 147 ARG 148 GLY 149 ASP 150 GLY 151 LEU 152 CYS 153 MET 154 SER 155 THR 156 PRO 157 SER 158 GLY 159 THR 160 THR 161 ALA 162 TYR 163 ASN 164 LYS 165 SER 166 LEU 167 GLY 168 GLY 169 ALA 170 LEU 171 MET 172 HIS 173 PRO 174 SER 175 ILE 176 GLU 177 ALA 178 MET 179 GLN 180 LEU 181 THR 182 GLU 183 MET 184 ALA 185 SER 186 ILE 187 ASN 188 ASN 189 ARG 190 VAL 191 TYR 192 ARG 193 THR 194 ILE 195 GLY 196 SER 197 PRO 198 LEU 199 VAL 200 PHE 201 PRO 202 LYS 203 HIS 204 HIS 205 VAL 206 VAL 207 SER 208 LEU 209 GLN 210 PRO 211 VAL 212 ASN 213 ASP 214 LYS 215 ASP 216 PHE 217 GLN 218 ILE 219 SER 220 VAL 221 ASP 222 HIS 223 LEU 224 SER 225 ILE 226 LEU 227 HIS 228 ARG 229 ASP 230 VAL 231 GLN 232 GLU 233 ILE 234 ARG 235 TYR 236 GLU 237 VAL 238 SER 239 ALA 240 LYS 241 LYS 242 ILE 243 HIS 244 PHE 245 ALA 246 ARG 247 PHE 248 ARG 249 SER 250 PHE 251 PRO 252 PHE 253 TRP 254 ARG 255 ARG 256 VAL 257 HIS 258 ASP 259 SER 260 PHE 261 ILE 262 GLU 263
Unit 4	TYR 3 MET 4 ILE 5 THR 6 SER 7 LYS 8 GLY 9 ASP 10 GLU 11 LYS 12 SER 13 ASP 14 LEU 15 LEU 16 ARG 17 LEU 18 ASN 19 MET 20 ILE 21 ALA 22 GLY 23 PHE 24 GLY 25 GLU 26 TYR 27 ASP 28 MET 29 GLU 30 TYR 31 ASP 32 ASP 33 VAL 34 GLU 35 PRO 36 GLU 37 ILE 38 VAL 39 ILE 40 SER 41 ILE 42 GLY 43 GLY 44 ASP 45 GLY 46 THR 47 PHE 48 LEU 49 SER 50 ALA 51 PHE 52 HIS 53 GLN 54 TYR 55 GLU 56 GLU 57 ARG 58 LEU 59 ASP 60 GLU 61 ILE 62 ALA 63 PHE 64 ILE 65 GLY 66 ILE 67 HIS 68 THR 69 GLY 70 HIS 71 LEU 72 GLY 73 PHE 74 TYR 75 ALA 76 ASP 77 TRP 78 ARG 79 PRO 80 ALA 81 GLU 82 ALA 83 ASP 84 LYS 85 LEU 86 VAL 87 LYS 88 LEU 89 LEU 90 GLN 96 LYS 97 VAL 98 SER 99 TYR 100 PRO 101 LEU 102 LEU 103 LYS 104 THR 105 THR 106 VAL 107 LYS 108 GLU 115 ALA 116 THR 117 TYR 118 LEU 119 ALA 120 LEU 121 ASN 122 GLU 123 SER 124 THR 125 VAL 126 LYS 127 SER 128 SER 129 GLY 130 GLY 131 PRO 132 PHE 133 VAL 134 VAL 135 ASP 136 VAL 137 VAL 138 ILE 139 ASN 140 ASP 141 ILE 142 HIS 143 PHE 144 GLU 145 ARG 146 PHE 147 ARG 148 GLY 149 ASP 150 GLY 151 LEU 152 CYS 153 MET 154 SER 155 THR 156 PRO 157 SER 158 GLY 159 THR 160 THR 161 ALA 162 TYR 163 ASN 164 LYS 165 SER 166 LEU 167 GLY 168 GLY 169 ALA 170 LEU 171 MET 172 HIS 173 PRO 174 SER 175 ILE 176 GLU 177 ALA 178 MET 179 GLN 180 LEU 181 THR 182 GLU 183 MET 184 ALA 185 SER 186 ILE 187 ASN 188 ASN 189 ARG 190 VAL 191 TYR 192 ARG 193 THR 194 ILE 195 GLY 196 SER 197 PRO 198 LEU 199 VAL 200 PHE 201 PRO 202 LYS 203 HIS 204 HIS 205 VAL 206 VAL 207 SER 208 LEU 209 GLN 210 PRO 211 VAL 212 ASN 213 ASP 214 LYS 215 ASP 216 PHE 217 GLN 218 ILE 219 SER 220 VAL 221 ASP 222 HIS 223 LEU 224 SER 225 ILE 226 LEU 227 HIS 228 ARG 229 ASP 230 VAL 231 GLN 232 GLU 233 ILE 234 ARG 235 TYR 236 GLU 237 VAL 238 SER 239 ALA 240 LYS 241 LYS 242 ILE 243 HIS 244 PHE 245 ALA 246 ARG 247 PHE 248 ARG 249 SER 250 PHE 251 PRO 252 PHE 253 TRP 254 ARG 255 ARG 256 VAL 257 HIS 258 ASP 259 SER 260 PHE 261 ILE 262 GLU 263

Ligands

Unit 5	CIT 301 GOL 302 5A9 303
Unit 6	CIT 301 5A9 302
Unit 7	5A9 301
Unit 8	GOL 301 5A9 302