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Title | COOPERATIVITY AND DOWNSTREAM BINDING IN RNA REPLICATION | |
Keywords | RNA, MONOMER, COOPERATIVITY | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 5DHC | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | RNA | A | 14 | 209 | 88 | |
2 | RNA | B | 14 | 209 | 88 | |
3 | RNA | C | 14 | 209 | 88 | |
4 | RNA | D | 14 | 209 | 88 | |
5 | Ligand | RNA (5'-R(*(LCC)P*(LCC)P*(LCA)P*(LCG) P*AP*CP*UP*UP*AP*AP*GP*UP*CP*U)-3') | A | 5 | 0 | 51 |
6 | Ligand | RNA (5'-R(*(LCC)P*(LCC)P*(LCA)P*(LCG) P*AP*CP*UP*UP*AP*AP*GP*UP*CP*U)-3') | B | 6 | 0 | 52 |
7 | Ligand | RNA (5'-R(*(LCC)P*(LCC)P*(LCA)P*(LCG) P*AP*CP*UP*UP*AP*AP*GP*UP*CP*U)-3') | C | 6 | 0 | 52 |
8 | Ligand | RNA (5'-R(*(LCC)P*(LCC)P*(LCA)P*(LCG) P*AP*CP*UP*UP*AP*AP*GP*UP*CP*U)-3') | D | 6 | 0 | 52 |
9 | Water | 284 | 0 | 284 | ||
total | 363 | 836 | 843 |
Unit 1 | LCC1 LCC2 LCA3 LCG4 A5 C6 U7 U8 A9 A10 G11 U12 C13 U14 |
Unit 2 | LCC1 LCC2 LCA3 LCG4 A5 C6 U7 U8 A9 A10 G11 U12 C13 U14 |
Unit 3 | LCC1 LCC2 LCA3 LCG4 A5 C6 U7 U8 A9 A10 G11 U12 C13 U14 |
Unit 4 | LCC1 LCC2 LCA3 LCG4 A5 C6 U7 U8 A9 A10 G11 U12 C13 U14 |
Unit 5 | MG101 MG102 MG103 5GP104 5GP105 |
Unit 6 | MG101 MG102 MG103 MG104 5GP105 5GP106 |
Unit 7 | MG101 MG102 MG103 MG104 5GP105 5GP106 |
Unit 8 | MG101 MG102 MG103 MG104 5GP105 5GP106 |
Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |