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Sequence, Chains, Asymmetric and Biological Units

Title COOPERATIVITY AND DOWNSTREAM BINDING IN RNA REPLICATION
Keywords RNA, MONOMER, COOPERATIVITY
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

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Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 14 209 88
2  RNA    B 14 209 88
3  RNA    C 14 209 88
4  RNA    D 14 209 88
5  Ligand   RNA (5'-R(*(LCC)P*(LCC)P*(LCA)P*(LCG) P*AP*CP*UP*UP*AP*AP*GP*UP*CP*U)-3')  A 5 0 51
6  Ligand   RNA (5'-R(*(LCC)P*(LCC)P*(LCA)P*(LCG) P*AP*CP*UP*UP*AP*AP*GP*UP*CP*U)-3')  B 6 0 52
7  Ligand   RNA (5'-R(*(LCC)P*(LCC)P*(LCA)P*(LCG) P*AP*CP*UP*UP*AP*AP*GP*UP*CP*U)-3')  C 6 0 52
8  Ligand   RNA (5'-R(*(LCC)P*(LCC)P*(LCA)P*(LCG) P*AP*CP*UP*UP*AP*AP*GP*UP*CP*U)-3')  D 6 0 52
9 Water     284 0 284
total       363 836 843

Nucleic acids
Unit 1 LCC1 LCC2 LCA3 LCG4 A5 C6 U7 U8 A9 A10 G11 U12 C13 U14
Unit 2 LCC1 LCC2 LCA3 LCG4 A5 C6 U7 U8 A9 A10 G11 U12 C13 U14
Unit 3 LCC1 LCC2 LCA3 LCG4 A5 C6 U7 U8 A9 A10 G11 U12 C13 U14
Unit 4 LCC1 LCC2 LCA3 LCG4 A5 C6 U7 U8 A9 A10 G11 U12 C13 U14

Ligands
Unit 5 MG101 MG102 MG103 5GP104 5GP105
Unit 6 MG101 MG102 MG103 MG104 5GP105 5GP106
Unit 7 MG101 MG102 MG103 MG104 5GP105 5GP106
Unit 8 MG101 MG102 MG103 MG104 5GP105 5GP106

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany