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Sequence, Chains, Asymmetric and Biological Units

Title TWO DIVALENT METAL IONS AND CONFORMATIONAL CHANGES PLAY ROLE HAMMERHEAD RIBOZYME CLEAVAGE REACTION- G12A MUTANT IN ZN2+
Keywords RIBOZYME, HAMMERHEAD, RNA
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5DH8     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 48 1549 0
2  RNA    B 20 645 0
3  Ligand   RNA (48-MER)  A 8 0 8
4  Ligand   5'-R(*GP*GP*GP*CP*GP*U)-D(P*C)- R(P*UP*GP*GP*GP*CP*AP*GP*UP*AP*CP*CP*CP*A)-3'  B 5 0 5
total       81 2194 13
Nucleic acids
Unit 1 G1 G2 G3 U4 A5 C6 U7 U8 A9 A10 G11 C12 C13 C14 A15 C16 U17 G18 A19 U20 G21 A22 G23 U24 C25 G26 C27 U28 G29 G30 G31 A32 U33 G34 C35 G36 A37 C38 A39 A40 A41 A42 C43 G44 C45 C46 C47 A48
Unit 2 G1 G2 G3 C4 G5 U6 DC7 U8 G9 G10 G11 C12 A13 G14 U15 A16 C17 C18 C19 A20
Ligands
Unit 3 ZN101 ZN102 ZN103 ZN104 ZN105 ZN106 ZN107 ZN108
Unit 4 ZN101 ZN102 ZN103 ZN104 ZN105
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany