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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN HUMAN FMRP RGG MOTI QUADRUPLEX RNA, IRIDIUM HEXAMMINE BOUND FORM.
Keywords FRAGILE X SYNDROME, RNA STRUCTURE, RGG BOX, FMRP, G-QUADRUPL BINDING PROTEIN-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   5DE8     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 35 759 0
2  Protein   FRAGILE X MENTAL RETARDATION PROTEIN 1  B 14 86 0
3  RNA    C 35 759 0
4  Protein   FRAGILE X MENTAL RETARDATION PROTEIN 1  D 14 84 0
5  Ligand   SC1  A 4 0 22
6  Ligand   SC1  C 3 0 15
total       105 1688 37

Proteins
Unit 2 GLY5 ASP6 GLY7 ARG8 ARG9 ARG10 GLY11 GLY12 GLY13 GLY14 ARG15 GLY16 GLN17 GLY18
Unit 4 ASP6 GLY7 ARG8 ARG9 ARG10 GLY11 GLY12 GLY13 GLY14 ARG15 GLY16 GLN17 GLY18 GLY19

Nucleic acids
Unit 1 G1 C2 U3 G4 C5 G6 G7 U8 G9 U10 G11 G12 A13 A14 G15 G16 A17 G18 U19 G20 G21 C22 U23 G24 G25 G26 U27 U28 G29 C30 G31 C32 A33 G34 C35
Unit 3 G1 C2 U3 G4 C5 G6 G7 U8 G9 U10 G11 G12 A13 A14 G15 G16 A17 G18 U19 G20 G21 C22 U23 G24 G25 G26 U27 U28 G29 C30 G31 C32 A33 G34 C35

Ligands
Unit 5 K101 IRI102 IRI103 IRI104
Unit 6 K101 IRI102 IRI103

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany