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Title | L-GLUTAMINE RIBOSWITCH BOUND WITH L-GLUTAMINE | |
Keywords | RIBOSWITCH, L-GLUTAMINE, BOUND-FORM, RNA, RNA BINDING PROTEI COMPLEX | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 5DDP | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | RNA | A | 61 | 1307 | 0 | |
2 | RNA | B | 61 | 1307 | 0 | |
3 | Protein | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A | C | 93 | 753 | 0 |
4 | Protein | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A | D | 94 | 758 | 0 |
5 | Protein | RNA (61-MER) | A | 11 | 0 | 20 |
6 | Protein | RNA (61-MER) | B | 10 | 0 | 19 |
7 | Water | 321 | 0 | 321 | ||
total | 651 | 4125 | 360 |
Unit 3 | PRO3 GLU4 THR5 ARG6 PRO7 ASN8 HIS9 THR10 ILE11 TYR12 ILE13 ASN14 ASN15 LEU16 ASN17 GLU18 LYS19 ILE20 LYS21 LYS22 ASP23 GLU24 LEU25 LYS26 LYS27 SER28 LEU29 HIS30 ALA31 ILE32 PHE33 SER34 ARG35 PHE36 GLY37 GLN38 ILE39 LEU40 ASP41 ILE42 LEU43 VAL44 SER45 ARG46 SER47 LEU48 LYS49 MET50 ARG51 GLY52 GLN53 ALA54 PHE55 VAL56 ILE57 PHE58 LYS59 GLU60 VAL61 SER62 SER63 ALA64 THR65 ASN66 ALA67 LEU68 ARG69 SER70 MET71 GLN72 GLY73 PHE74 PRO75 PHE76 TYR77 ASP78 LYS79 PRO80 MET81 ARG82 ILE83 GLN84 TYR85 ALA86 LYS87 THR88 ASP89 SER90 ASP91 ILE92 ILE93 ALA94 LYS95 |
Unit 4 | VAL2 PRO3 GLU4 THR5 ARG6 PRO7 ASN8 HIS9 THR10 ILE11 TYR12 ILE13 ASN14 ASN15 LEU16 ASN17 GLU18 LYS19 ILE20 LYS21 LYS22 ASP23 GLU24 LEU25 LYS26 LYS27 SER28 LEU29 HIS30 ALA31 ILE32 PHE33 SER34 ARG35 PHE36 GLY37 GLN38 ILE39 LEU40 ASP41 ILE42 LEU43 VAL44 SER45 ARG46 SER47 LEU48 LYS49 MET50 ARG51 GLY52 GLN53 ALA54 PHE55 VAL56 ILE57 PHE58 LYS59 GLU60 VAL61 SER62 SER63 ALA64 THR65 ASN66 ALA67 LEU68 ARG69 SER70 MET71 GLN72 GLY73 PHE74 PRO75 PHE76 TYR77 ASP78 LYS79 PRO80 MET81 ARG82 ILE83 GLN84 TYR85 ALA86 LYS87 THR88 ASP89 SER90 ASP91 ILE92 ILE93 ALA94 LYS95 |
Unit 5 | GLN101 MG102 MG103 MG104 MG105 MG106 NA107 NA108 NA109 NA110 NA111 |
Unit 6 | GLN101 MG102 MG103 MG104 MG105 NA106 NA107 NA108 NA109 NA110 |
Unit 1 | C1 G2 U3 U4 G5 A6 C7 C8 C9 A10 G11 G12 A13 A14 A15 C16 U17 G18 G19 G20 C21 G22 G23 A24 A25 G26 U27 A28 A29 G30 G31 U32 C33 C34 A35 U36 U37 G38 C39 A40 C41 U42 C43 C44 G45 G46 G47 C48 C49 U50 G51 A52 A53 G54 C55 A56 A57 C58 G59 C60 G61 |
Unit 2 | C1 G2 U3 U4 G5 A6 C7 C8 C9 A10 G11 G12 A13 A14 A15 C16 U17 G18 G19 G20 C21 G22 G23 A24 A25 G26 U27 A28 A29 G30 G31 U32 C33 C34 A35 U36 U37 G38 C39 A40 C41 U42 C43 C44 G45 G46 G47 C48 C49 U50 G51 A52 A53 G54 C55 A56 A57 C58 G59 C60 G61 |
Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |