5DDG - Sequence, Chains, Asymmetric and Biological Units

• Title: THE STRUCTURE OF TRANSCRIPTIONAL FACTOR ARAR FROM BACTEROIDE THETAIOTAOMICRON VPI IN COMPLEX WITH TARGET DOUBLE STRAND D
• Keywords: STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST CENTER FOR STRUCTU GENOMICS, MCSG, ARAR, DNA BINDING, TRANSCRIPTIONAL REGULATO BACTEROIDES THETAIOTAOMICRON, HELIX-TURN-HELIX MOTIF, NUDIX TRANSCRIPTION REGULATOR-DNA COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5DDG	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	TRANSCRIPTIONAL FACTOR ARAR	A	226	1749	72
2	Protein	TRANSCRIPTIONAL FACTOR ARAR	B	223	1734	64
3	Other macromolecule	DNA (27-MER)	C	27	549	0
4	Other macromolecule	DNA (27-MER)	D	27	558	0
5	Ligand	TRANSCRIPTIONAL FACTOR ARAR	A	2	0	10
6	Ligand	TRANSCRIPTIONAL FACTOR ARAR	B	2	0	10
7	Water			16	0	16
total				523	4590	172

Proteins

Unit 1

ALA 0 MSE 1 LYS 2 ASN 3 TYR 4 TYR 5 SER 6 SER 7 ASN 8 PRO 9 THR 10 PHE 11 TYR 12 LEU 13 GLY 14 ILE 15 ASP 16 CYS 17 ILE 18 ILE 19 PHE 20 GLY 21 PHE 22 ASN 23 GLU 24 GLY 25 GLU 26 ILE 27 SER 28 LEU 29 LEU 30 LEU 31 LEU 32 LYS 33 ARG 34 ASN 35 PHE 36 GLU 37 PRO 38 ALA 39 MSE 40 GLY 41 GLU 42 TRP 43 SER 44 LEU 45 MSE 46 GLY 47 GLY 48 PHE 49 VAL 50 GLN 51 LYS 52 ASP 53 GLU 54 SER 55 VAL 56 ASP 57 ASP 58 ALA 59 ALA 60 LYS 61 ARG 62 VAL 63 LEU 64 ALA 65 GLU 66 LEU 67 THR 68 GLY 69 LEU 70 GLU 71 ASN 72 VAL 73 TYR 74 MSE 75 GLU 76 GLN 77 VAL 78 GLY 79 ALA 80 PHE 81 GLY 82 ALA 83 ILE 84 ASP 85 ARG 86 ASP 87 PRO 88 GLY 89 GLU 90 ARG 91 VAL 92 VAL 93 SER 94 ILE 95 ALA 96 TYR 97 TYR 98 ALA 99 LEU 100 ILE 101 ASN 102 ILE 103 ASN 104 GLU 105 TYR 106 ASP 107 ARG 108 GLU 109 LEU 110 VAL 111 GLN 112 LYS 113 HIS 114 ASN 115 ALA 116 TYR 117 TRP 118 VAL 119 ASN 120 ILE 121 ASN 122 GLU 123 LEU 124 PRO 125 ALA 126 LEU 127 ILE 128 PHE 129 ASP 130 HIS 131 PRO 132 GLU 133 MSE 134 VAL 135 ASP 136 LYS 137 ALA 138 ARG 139 GLU 140 MSE 141 MSE 142 LYS 143 GLN 144 LYS 145 ALA 146 SER 147 VAL 148 GLU 149 PRO 150 ILE 151 GLY 152 PHE 153 ASN 154 LEU 155 LEU 156 PRO 157 LYS 158 LEU 159 PHE 160 THR 161 LEU 162 SER 163 GLN 164 LEU 165 GLN 166 SER 167 LEU 168 TYR 169 GLU 170 ALA 171 ILE 172 TYR 173 GLY 174 GLU 175 PRO 176 MSE 177 ASP 178 LYS 179 ARG 180 ASN 181 PHE 182 ARG 183 LYS 184 ARG 185 VAL 186 ALA 187 GLU 188 MSE 189 ASP 190 PHE 191 ILE 192 GLU 193 LYS 194 THR 195 ASP 196 LYS 197 ILE 198 ASP 199 LYS 200 LEU 201 GLY 202 SER 203 LYS 204 ARG 205 GLY 206 ALA 207 ALA 208 LEU 209 TYR 210 LYS 211 PHE 212 ASN 213 GLY 214 LYS 215 ALA 216 TYR 217 ARG 218 LYS 219 ASP 220 PRO 221 LYS 222 PHE 223 LYS 224 LEU 225

Unit 2

ASN 3 TYR 4 TYR 5 SER 6 SER 7 ASN 8 PRO 9 THR 10 PHE 11 TYR 12 LEU 13 GLY 14 ILE 15 ASP 16 CYS 17 ILE 18 ILE 19 PHE 20 GLY 21 PHE 22 ASN 23 GLU 24 GLY 25 GLU 26 ILE 27 SER 28 LEU 29 LEU 30 LEU 31 LEU 32 LYS 33 ARG 34 ASN 35 PHE 36 GLU 37 PRO 38 ALA 39 MSE 40 GLY 41 GLU 42 TRP 43 SER 44 LEU 45 MSE 46 GLY 47 GLY 48 PHE 49 VAL 50 GLN 51 LYS 52 ASP 53 GLU 54 SER 55 VAL 56 ASP 57 ASP 58 ALA 59 ALA 60 LYS 61 ARG 62 VAL 63 LEU 64 ALA 65 GLU 66 LEU 67 THR 68 GLY 69 LEU 70 GLU 71 ASN 72 VAL 73 TYR 74 MSE 75 GLU 76 GLN 77 VAL 78 GLY 79 ALA 80 PHE 81 GLY 82 ALA 83 ILE 84 ASP 85 ARG 86 ASP 87 PRO 88 GLY 89 GLU 90 ARG 91 VAL 92 VAL 93 SER 94 ILE 95 ALA 96 TYR 97 TYR 98 ALA 99 LEU 100 ILE 101 ASN 102 ILE 103 ASN 104 GLU 105 TYR 106 ASP 107 ARG 108 GLU 109 LEU 110 VAL 111 GLN 112 LYS 113 HIS 114 ASN 115 ALA 116 TYR 117 TRP 118 VAL 119 ASN 120 ILE 121 ASN 122 GLU 123 LEU 124 PRO 125 ALA 126 LEU 127 ILE 128 PHE 129 ASP 130 HIS 131 PRO 132 GLU 133 MSE 134 VAL 135 ASP 136 LYS 137 ALA 138 ARG 139 GLU 140 MSE 141 MSE 142 LYS 143 GLN 144 LYS 145 ALA 146 SER 147 VAL 148 GLU 149 PRO 150 ILE 151 GLY 152 PHE 153 ASN 154 LEU 155 LEU 156 PRO 157 LYS 158 LEU 159 PHE 160 THR 161 LEU 162 SER 163 GLN 164 LEU 165 GLN 166 SER 167 LEU 168 TYR 169 GLU 170 ALA 171 ILE 172 TYR 173 GLY 174 GLU 175 PRO 176 MSE 177 ASP 178 LYS 179 ARG 180 ASN 181 PHE 182 ARG 183 LYS 184 ARG 185 VAL 186 ALA 187 GLU 188 MSE 189 ASP 190 PHE 191 ILE 192 GLU 193 LYS 194 THR 195 ASP 196 LYS 197 ILE 198 ASP 199 LYS 200 LEU 201 GLY 202 SER 203 LYS 204 ARG 205 GLY 206 ALA 207 ALA 208 LEU 209 TYR 210 LYS 211 PHE 212 ASN 213 GLY 214 LYS 215 ALA 216 TYR 217 ARG 218 LYS 219 ASP 220 PRO 221 LYS 222 PHE 223 LYS 224 LEU 225

Other macromolecules

Unit 3	DG 1 DC 2 DA 3 DA 4 DA 5 DA 6 DG 7 DT 8 DG 9 DT 10 DT 11 DA 12 DC 13 DT 14 DT 15 DT 16 DT 17 DA 18 DC 19 DA 20 DC 21 DC 22 DC 23 DA 24 DT 25 DG 26 DC 27
Unit 4	DG 1 DC 2 DA 3 DT 4 DG 5 DG 6 DG 7 DT 8 DG 9 DT 10 DA 11 DA 12 DA 13 DA 14 DG 15 DT 16 DA 17 DA 18 DC 19 DA 20 DC 21 DT 22 DT 23 DT 24 DT 25 DG 26 DC 27

Ligands

Unit 5	MLA 301 FMT 302
Unit 6	FMT 301 MLA 302