5D8H - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF THE BASE OF THE RIBOSOMAL P STALK FROM METHANOCOCCUS JANNASCHII WITH ANTIBIOTIC THIOSTREPTON
• Keywords: RIBOSOME, P-STALK, ARCHAEA, ANTIBIOTIC, THIOSTREPTON, RIBOSO PROTEIN
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5D8H	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	RNA		A	74	1588	0
2	Protein	50S RIBOSOMAL PROTEIN L10	B	207	1541	48
3	Protein	50S RIBOSOMAL PROTEIN L11	C	158	1157	40
4	Protein	THIOSTREPTON	D	19	35	79
5	Ligand	23S RIBOSOMAL RNA	A	15	0	29
6	Ligand	50S RIBOSOMAL PROTEIN L10	B	2	0	9
7	Ligand	50S RIBOSOMAL PROTEIN L11	C	1	0	1
8	Water			65	0	65
total				541	4321	271

Proteins

Unit 2	MSE 9 ALA 10 PRO 11 TRP 12 LYS 13 ILE 14 GLU 15 GLU 16 VAL 17 LYS 18 THR 19 LEU 20 LYS 21 GLY 22 LEU 23 ILE 24 LYS 25 SER 26 LYS 27 PRO 28 VAL 29 VAL 30 ALA 31 ILE 32 VAL 33 ASP 34 MSE 35 MSE 36 ASP 37 VAL 38 PRO 39 ALA 40 PRO 41 GLN 42 LEU 43 GLN 44 GLU 45 ILE 46 ARG 47 ASP 48 LYS 49 ILE 50 ARG 51 ASP 52 LYS 53 VAL 54 LYS 55 LEU 56 ARG 57 MSE 58 SER 59 ARG 60 ASN 61 THR 62 LEU 63 ILE 64 ILE 65 ARG 66 ALA 67 LEU 68 LYS 69 GLU 70 ALA 71 ALA 72 GLU 73 GLU 74 LEU 75 ASN 76 ASN 77 PRO 78 LYS 79 LEU 80 ALA 81 GLU 82 LEU 83 ALA 84 ASN 85 TYR 86 VAL 87 GLU 88 ARG 89 GLY 90 ALA 91 ALA 92 ILE 93 LEU 94 VAL 95 THR 96 ASP 97 MSE 98 ASN 99 PRO 100 PHE 101 LYS 102 LEU 103 TYR 104 LYS 105 LEU 106 LEU 107 GLU 108 GLU 109 ASN 110 LYS 111 SER 112 PRO 113 ALA 114 PRO 115 VAL 116 ARG 117 GLY 118 GLY 119 GLN 120 ILE 121 ALA 122 PRO 123 CYS 124 ASP 125 ILE 126 LYS 127 VAL 128 GLU 129 LYS 130 GLY 131 SER 132 THR 133 GLY 134 MSE 135 PRO 136 PRO 137 GLY 138 PRO 139 PHE 140 LEU 141 GLY 142 GLU 143 LEU 144 LYS 145 SER 146 VAL 147 GLY 148 ILE 149 PRO 150 ALA 151 ALA 152 ILE 153 GLU 154 LYS 155 GLY 156 LYS 157 ILE 158 ALA 159 ILE 160 LYS 161 GLU 162 ASP 163 LYS 164 VAL 165 VAL 166 VAL 167 LYS 168 LYS 169 GLY 170 GLU 171 VAL 172 VAL 173 SER 174 PRO 175 LYS 176 LEU 177 ALA 178 ALA 179 VAL 180 LEU 181 ASP 182 ARG 183 LEU 184 GLY 185 ILE 186 LYS 187 PRO 188 ILE 189 LYS 190 VAL 191 GLY 192 LEU 193 ASN 194 ILE 195 LEU 196 ALA 197 VAL 198 TYR 199 GLU 200 ASP 201 GLY 202 ILE 203 ILE 204 TYR 205 THR 206 PRO 207 ASP 208 VAL 209 LEU 210 LYS 211 VAL 212 ASP 213 GLU 214 GLU 215
Unit 3	ALA 1 LYS 2 GLU 3 VAL 4 VAL 5 GLU 6 VAL 7 LEU 8 VAL 9 THR 10 GLY 11 GLY 12 ARG 13 ALA 14 THR 15 ALA 16 GLY 17 PRO 18 PRO 19 LEU 20 GLY 21 PRO 22 ALA 23 ILE 24 GLY 25 PRO 26 LEU 27 GLY 28 VAL 29 ASN 30 VAL 31 MSE 32 GLN 33 VAL 34 VAL 35 LYS 36 GLU 37 ILE 38 ASN 39 GLU 40 LYS 41 THR 42 LYS 43 ASP 44 TYR 45 GLU 46 GLY 47 MSE 48 GLN 49 VAL 50 PRO 51 VAL 52 LYS 53 VAL 54 ILE 55 VAL 56 ASP 57 THR 58 GLU 59 THR 60 ARG 61 LYS 62 PHE 63 GLU 64 ILE 65 GLU 66 VAL 67 GLY 68 ILE 69 PRO 70 PRO 71 THR 72 THR 73 ALA 74 LEU 75 ILE 76 LYS 77 LYS 78 GLU 79 LEU 80 GLY 81 ILE 82 GLU 83 THR 84 ALA 85 ALA 86 HIS 87 GLU 88 PRO 89 ARG 90 HIS 91 GLU 92 VAL 93 VAL 94 GLY 95 ASN 96 LEU 97 THR 98 LEU 99 GLU 100 GLN 101 VAL 102 ILE 103 LYS 104 ILE 105 ALA 106 LYS 107 MSE 108 LYS 109 LYS 110 ASP 111 ALA 112 MSE 113 LEU 114 SER 115 TYR 116 THR 117 LEU 118 LYS 119 ASN 120 ALA 121 VAL 122 LYS 123 GLU 124 VAL 125 LEU 126 GLY 127 THR 128 CYS 129 GLY 130 SER 131 MSE 132 GLY 133 VAL 134 THR 135 VAL 136 GLU 137 GLY 138 LYS 139 ASP 140 PRO 141 LYS 142 GLU 143 VAL 144 GLN 145 LYS 146 GLU 147 ILE 148 ASP 149 ALA 150 GLY 151 VAL 152 TYR 153 ASP 154 GLU 155 TYR 156 PHE 157 LYS 158
Unit 4	QUA 0 ILE 1 ALA 2 DHA 3 ALA 4 SER 5 BB9 6 THR 7 DBU 8 DCY 9 TS9 10 BB9 11 THR 12 BB9 13 MH6 14 BB9 15 DHA 16 DHA 17 NH2 18

Nucleic acids

Unit 1

G 1151 C 1152 C 1153 U 1154 A 1155 A 1156 G 1157 A 1158 C 1159 A 1160 G 1161 C 1162 G 1163 G 1164 G 1165 G 1166 A 1167 G 1168 G 1169 U 1170 U 1171 G 1172 G 1173 C 1174 U 1175 U 1176 A 1177 G 1178 A 1179 A 1180 G 1181 C 1182 A 1183 G 1184 C 1185 C 1186 A 1187 U 1188 C 1189 C 1190 U 1191 U 1192 U 1193 A 1194 A 1195 A 1196 G 1197 A 1198 G 1199 U 1200 G 1201 C 1202 G 1203 U 1204 A 1205 A 1206 C 1207 A 1208 G 1209 C 1210 U 1211 C 1212 A 1213 C 1214 C 1215 C 1216 G 1217 U 1218 C 1219 G 1220 A 1221 G 1222 G 1223 C 1224

Ligands

Unit 5	MG 1301 MG 1302 MG 1303 MG 1304 MG 1305 MG 1306 MG 1307 MG 1308 MG 1309 MG 1310 NA 1311 NA 1312 NA 1313 TRS 1314 TRS 1315
Unit 6	NA 301 TRS 302
Unit 7	MG 201