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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF D-ALANINE-D-ALANINE LIGASE FROM ACINETO BAUMANNII
Keywords D-ALANINE-D-ALANINE LIGASE, ACINETOBACTER BAUMANNII, APO STR DRUG TARGET, LIGASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   5D8D     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   D-ALANINE--D-ALANINE LIGASE  A 282 2139 0
2  Protein   D-ALANINE--D-ALANINE LIGASE  B 282 2141 0
3  Protein   D-ALANINE--D-ALANINE LIGASE  C 274 2082 0
4  Protein   D-ALANINE--D-ALANINE LIGASE  D 284 2154 0
5  Protein   D-ALANINE--D-ALANINE LIGASE  E 276 2083 0
6  Protein   D-ALANINE--D-ALANINE LIGASE  F 278 2112 0
7 Water     199 0 199
total       1875 12711 199

Proteins
Unit 1 SER2 ASN3 ALA4 THR5 LYS6 PHE7 GLY8 LYS9 VAL10 ALA11 VAL12 LEU13 LEU14 GLY15 GLY16 LYS17 SER18 ALA19 GLU20 ARG21 ALA22 VAL23 SER24 LEU25 ASP26 SER27 GLY28 GLN29 ALA30 VAL31 LEU32 ASP33 ALA34 LEU35 LEU36 ARG37 SER38 GLY39 VAL40 GLN41 ALA42 GLU43 ALA44 PHE45 ASP46 PRO47 GLN48 ASP49 ARG50 SER51 VAL52 THR53 GLU54 LEU55 VAL56 ASN57 TYR58 ASP59 ARG60 ALA61 PHE62 ILE63 VAL64 LEU65 HIS66 GLY67 ARG68 GLY69 GLY70 GLU71 ASP72 GLY73 GLN74 ILE75 GLN76 GLY77 VAL78 LEU79 GLU80 TRP81 LEU82 ASN83 ILE84 PRO85 TYR86 THR87 GLY88 THR89 GLY90 VAL91 GLN92 GLY93 SER94 ALA95 ILE96 GLY97 MET98 ASP99 LYS100 VAL101 LYS102 THR103 LYS104 GLN105 ILE106 TRP107 GLN108 GLY109 SER110 ASP111 LEU112 PRO113 THR114 ALA115 PRO116 TYR117 ARG118 ILE119 ILE120 THR121 LYS122 GLU123 THR124 ASP125 LEU126 ASP127 SER128 VAL129 ILE130 ALA131 GLU132 LEU133 GLY134 LEU135 PRO136 VAL137 ILE138 ILE139 LYS140 PRO141 VAL142 HIS143 GLU144 GLY145 SER147 VAL148 GLY149 MET150 SER151 LYS152 VAL153 GLU154 LYS155 ALA156 GLU157 ASP158 PHE159 ALA160 ALA161 ALA162 ILE163 GLU164 LYS165 ALA166 THR167 GLN168 HIS169 ASP170 ALA171 VAL172 VAL173 MET174 ALA175 GLU176 LYS177 TRP178 ILE179 THR180 GLY181 ARG182 GLU183 PHE184 THR185 ILE186 SER187 PHE188 LEU189 ASN190 GLY191 GLN192 PRO193 LEU194 PRO195 VAL196 ILE197 ARG198 LEU199 GLN200 TYR221 GLY222 ILE223 PRO224 CYS225 GLY226 LEU227 SER228 GLU229 THR230 GLU231 GLU232 LYS233 LYS234 LEU235 GLN236 ALA237 LEU238 CYS239 LEU240 ARG241 ALA242 PHE243 GLN244 ALA245 VAL246 GLY247 ALA248 GLU249 GLY250 TRP251 GLY252 ARG253 ILE254 ASP255 ALA256 MET257 GLN258 ASP259 GLU260 GLN261 GLY262 ASN263 PHE264 TRP265 LEU266 LEU267 GLU268 VAL269 ASN270 THR271 VAL272 PRO273 GLY274 MET275 THR276 SER277 HIS278 SER279 LEU280 VAL281 PRO282 LYS283 ALA284 ALA285 LYS286 ALA287 VAL288 GLY289 TYR290 SER291 PHE292 ASP293 GLU294 LEU295 CYS296 VAL297 ALA298 ILE299 LEU300 GLU301 GLN302 THR303 LEU304
Unit 2 SER2 ASN3 ALA4 THR5 LYS6 PHE7 GLY8 LYS9 VAL10 ALA11 VAL12 LEU13 LEU14 GLY15 GLY16 LYS17 SER18 ALA19 GLU20 ARG21 ALA22 VAL23 SER24 LEU25 ASP26 SER27 GLY28 GLN29 ALA30 VAL31 LEU32 ASP33 ALA34 LEU35 LEU36 ARG37 SER38 GLY39 VAL40 GLN41 ALA42 GLU43 ALA44 PHE45 ASP46 PRO47 GLN48 ASP49 ARG50 SER51 VAL52 THR53 GLU54 LEU55 VAL56 ASN57 TYR58 ASP59 ARG60 ALA61 PHE62 ILE63 VAL64 LEU65 HIS66 GLY67 ARG68 GLY69 GLY70 GLU71 ASP72 GLY73 GLN74 ILE75 GLN76 GLY77 VAL78 LEU79 GLU80 TRP81 LEU82 ASN83 ILE84 PRO85 TYR86 THR87 GLY88 THR89 GLY90 VAL91 GLN92 GLY93 SER94 ALA95 ILE96 GLY97 MET98 ASP99 LYS100 VAL101 LYS102 THR103 LYS104 GLN105 ILE106 TRP107 GLN108 GLY109 SER110 ASP111 LEU112 PRO113 THR114 ALA115 PRO116 TYR117 ARG118 ILE119 ILE120 THR121 LYS122 GLU123 THR124 ASP125 LEU126 ASP127 SER128 VAL129 ILE130 ALA131 GLU132 LEU133 GLY134 LEU135 PRO136 VAL137 ILE138 ILE139 LYS140 PRO141 VAL142 HIS143 GLU144 SER146 SER147 VAL148 GLY149 MET150 SER151 LYS152 VAL153 GLU154 LYS155 ALA156 GLU157 ASP158 PHE159 ALA160 ALA161 ALA162 ILE163 GLU164 LYS165 ALA166 THR167 GLN168 HIS169 ASP170 ALA171 VAL172 VAL173 MET174 ALA175 GLU176 LYS177 TRP178 ILE179 THR180 GLY181 ARG182 GLU183 PHE184 THR185 ILE186 SER187 PHE188 LEU189 ASN190 GLY191 GLN192 PRO193 LEU194 PRO195 VAL196 ILE197 ARG198 LEU199 GLN200 TYR221 GLY222 ILE223 PRO224 CYS225 GLY226 LEU227 SER228 GLU229 THR230 GLU231 GLU232 LYS233 LYS234 LEU235 GLN236 ALA237 LEU238 CYS239 LEU240 ARG241 ALA242 PHE243 GLN244 ALA245 VAL246 GLY247 ALA248 GLU249 GLY250 TRP251 GLY252 ARG253 ILE254 ASP255 ALA256 MET257 GLN258 ASP259 GLU260 GLN261 GLY262 ASN263 PHE264 TRP265 LEU266 LEU267 GLU268 VAL269 ASN270 THR271 VAL272 PRO273 GLY274 MET275 THR276 SER277 HIS278 SER279 LEU280 VAL281 PRO282 LYS283 ALA284 ALA285 LYS286 ALA287 VAL288 GLY289 TYR290 SER291 PHE292 ASP293 GLU294 LEU295 CYS296 VAL297 ALA298 ILE299 LEU300 GLU301 GLN302 THR303 LEU304
Unit 3 SER2 ASN3 ALA4 THR5 LYS6 PHE7 GLY8 LYS9 VAL10 ALA11 VAL12 LEU13 LEU14 GLY15 GLY16 LYS17 SER18 ALA19 GLU20 ARG21 ALA22 VAL23 SER24 LEU25 ASP26 SER27 GLY28 GLN29 ALA30 VAL31 LEU32 ASP33 ALA34 LEU35 LEU36 ARG37 SER38 GLY39 VAL40 GLN41 ALA42 GLU43 ALA44 PHE45 ASP46 PRO47 GLN48 ASP49 ARG50 SER51 VAL52 THR53 GLU54 LEU55 VAL56 ASN57 TYR58 ASP59 ARG60 ALA61 PHE62 ILE63 VAL64 LEU65 HIS66 GLY67 ARG68 GLY69 GLY70 GLU71 ASP72 GLY73 GLN74 ILE75 GLN76 GLY77 VAL78 LEU79 GLU80 TRP81 LEU82 ASN83 ILE84 PRO85 TYR86 THR87 GLY88 THR89 GLY90 VAL91 GLN92 GLY93 SER94 ALA95 ILE96 GLY97 MET98 ASP99 LYS100 VAL101 LYS102 THR103 LYS104 GLN105 ILE106 TRP107 GLN108 GLY109 SER110 ASP111 LEU112 PRO113 THR114 ALA115 PRO116 TYR117 ARG118 ILE119 ILE120 THR121 LYS122 GLU123 THR124 ASP125 LEU126 ASP127 SER128 VAL129 ILE130 ALA131 GLU132 LEU133 GLY134 LEU135 PRO136 VAL137 ILE138 ILE139 LYS140 PRO141 VAL142 HIS143 GLU144 VAL148 GLY149 MET150 SER151 LYS152 PHE159 ALA160 ALA161 ALA162 ILE163 GLU164 LYS165 ALA166 THR167 GLN168 HIS169 ASP170 ALA171 VAL172 VAL173 MET174 ALA175 GLU176 LYS177 TRP178 ILE179 THR180 GLY181 ARG182 GLU183 PHE184 THR185 ILE186 SER187 PHE188 LEU189 ASN190 GLY191 GLN192 PRO193 LEU194 PRO195 VAL196 ILE197 ARG198 LEU199 GLN200 TYR221 GLY222 ILE223 PRO224 CYS225 GLY226 LEU227 SER228 GLU229 THR230 GLU231 GLU232 LYS233 LYS234 LEU235 GLN236 ALA237 LEU238 CYS239 LEU240 ARG241 ALA242 PHE243 GLN244 ALA245 VAL246 GLY247 ALA248 GLU249 GLY250 TRP251 GLY252 ARG253 ILE254 ASP255 ALA256 MET257 GLN258 ASP259 GLU260 GLN261 GLY262 ASN263 PHE264 TRP265 LEU266 LEU267 GLU268 VAL269 ASN270 THR271 VAL272 PRO273 GLY274 MET275 THR276 SER277 HIS278 SER279 LEU280 VAL281 PRO282 LYS283 ALA284 ALA285 LYS286 ALA287 VAL288 GLY289 TYR290 SER291 PHE292 ASP293 GLU294 LEU295 CYS296 VAL297 ALA298 ILE299 LEU300 GLU301 GLN302 THR303 LEU304
Unit 4 SER2 ASN3 ALA4 THR5 LYS6 PHE7 GLY8 LYS9 VAL10 ALA11 VAL12 LEU13 LEU14 GLY15 GLY16 LYS17 SER18 ALA19 GLU20 ARG21 ALA22 VAL23 SER24 LEU25 ASP26 SER27 GLY28 GLN29 ALA30 VAL31 LEU32 ASP33 ALA34 LEU35 LEU36 ARG37 SER38 GLY39 VAL40 GLN41 ALA42 GLU43 ALA44 PHE45 ASP46 PRO47 GLN48 ASP49 ARG50 SER51 VAL52 THR53 GLU54 LEU55 VAL56 ASN57 TYR58 ASP59 ARG60 ALA61 PHE62 ILE63 VAL64 LEU65 HIS66 GLY67 ARG68 GLY69 GLY70 GLU71 ASP72 GLY73 GLN74 ILE75 GLN76 GLY77 VAL78 LEU79 GLU80 TRP81 LEU82 ASN83 ILE84 PRO85 TYR86 THR87 GLY88 THR89 GLY90 VAL91 GLN92 GLY93 SER94 ALA95 ILE96 GLY97 MET98 ASP99 LYS100 VAL101 LYS102 THR103 LYS104 GLN105 ILE106 TRP107 GLN108 GLY109 SER110 ASP111 LEU112 PRO113 THR114 ALA115 PRO116 TYR117 ARG118 ILE119 ILE120 THR121 LYS122 GLU123 THR124 ASP125 LEU126 ASP127 SER128 VAL129 ILE130 ALA131 GLU132 LEU133 GLY134 LEU135 PRO136 VAL137 ILE138 ILE139 LYS140 PRO141 VAL142 HIS143 GLU144 GLY145 SER146 SER147 VAL148 GLY149 MET150 SER151 LYS152 VAL153 GLU154 LYS155 ALA156 GLU157 ASP158 PHE159 ALA160 ALA161 ALA162 ILE163 GLU164 LYS165 ALA166 THR167 GLN168 HIS169 ASP170 ALA171 VAL172 VAL173 MET174 ALA175 GLU176 LYS177 TRP178 ILE179 THR180 GLY181 ARG182 GLU183 PHE184 THR185 ILE186 SER187 PHE188 LEU189 ASN190 GLY191 GLN192 PRO193 LEU194 PRO195 VAL196 ILE197 ARG198 LEU199 GLN200 TYR221 GLY222 ILE223 PRO224 CYS225 GLY226 LEU227 SER228 GLU229 THR230 GLU231 GLU232 LYS233 LYS234 LEU235 GLN236 ALA237 LEU238 CYS239 LEU240 ARG241 ALA242 PHE243 GLN244 ALA245 VAL246 GLY247 ALA248 GLU249 GLY250 TRP251 GLY252 ARG253 ILE254 ASP255 ALA256 MET257 GLN258 ASP259 GLU260 GLN261 GLY262 ASN263 PHE264 TRP265 LEU266 LEU267 GLU268 VAL269 ASN270 THR271 VAL272 PRO273 GLY274 MET275 THR276 SER277 HIS278 SER279 LEU280 VAL281 PRO282 LYS283 ALA284 ALA285 LYS286 ALA287 VAL288 GLY289 TYR290 SER291 PHE292 ASP293 GLU294 LEU295 CYS296 VAL297 ALA298 ILE299 LEU300 GLU301 GLN302 THR303 LEU304 GLU305
Unit 5 SER2 ASN3 ALA4 THR5 LYS6 PHE7 GLY8 LYS9 VAL10 ALA11 VAL12 LEU13 LEU14 GLY15 GLY16 LYS17 SER18 ALA19 GLU20 ARG21 ALA22 VAL23 SER24 LEU25 ASP26 SER27 GLY28 GLN29 ALA30 VAL31 LEU32 ASP33 ALA34 LEU35 LEU36 ARG37 SER38 GLY39 VAL40 GLN41 ALA42 GLU43 ALA44 PHE45 ASP46 PRO47 GLN48 ASP49 ARG50 SER51 VAL52 THR53 GLU54 LEU55 VAL56 ASN57 TYR58 ASP59 ARG60 ALA61 PHE62 ILE63 VAL64 LEU65 HIS66 GLY67 ARG68 GLY69 GLY70 GLU71 ASP72 GLY73 GLN74 ILE75 GLN76 GLY77 VAL78 LEU79 GLU80 TRP81 LEU82 ASN83 ILE84 PRO85 TYR86 THR87 GLY88 THR89 GLY90 VAL91 GLN92 GLY93 SER94 ALA95 ILE96 GLY97 MET98 ASP99 LYS100 VAL101 LYS102 THR103 LYS104 GLN105 ILE106 TRP107 GLN108 GLY109 SER110 ASP111 LEU112 PRO113 THR114 ALA115 PRO116 TYR117 ARG118 ILE119 ILE120 THR121 LYS122 GLU123 THR124 ASP125 LEU126 ASP127 SER128 VAL129 ILE130 ALA131 GLU132 LEU133 GLY134 LEU135 PRO136 VAL137 ILE138 ILE139 LYS140 PRO141 VAL142 HIS143 VAL148 GLY149 MET150 SER151 LYS152 VAL153 ALA156 GLU157 ASP158 PHE159 ALA160 ALA161 ALA162 ILE163 GLU164 LYS165 ALA166 THR167 ALA171 VAL172 VAL173 MET174 ALA175 GLU176 LYS177 TRP178 ILE179 THR180 GLY181 ARG182 GLU183 PHE184 THR185 ILE186 SER187 PHE188 LEU189 ASN190 GLY191 GLN192 PRO193 LEU194 PRO195 VAL196 ILE197 ARG198 LEU199 GLN200 GLY222 ILE223 PRO224 CYS225 GLY226 LEU227 SER228 GLU229 THR230 GLU231 GLU232 LYS233 LYS234 LEU235 GLN236 ALA237 LEU238 CYS239 LEU240 ARG241 ALA242 PHE243 GLN244 ALA245 VAL246 GLY247 ALA248 GLU249 GLY250 TRP251 GLY252 ARG253 ILE254 ASP255 ALA256 MET257 GLN258 ASP259 GLU260 GLN261 GLY262 ASN263 PHE264 TRP265 LEU266 LEU267 GLU268 VAL269 ASN270 THR271 VAL272 PRO273 GLY274 MET275 THR276 SER277 HIS278 SER279 LEU280 VAL281 PRO282 LYS283 ALA284 ALA285 LYS286 ALA287 VAL288 GLY289 TYR290 SER291 PHE292 ASP293 GLU294 LEU295 CYS296 VAL297 ALA298 ILE299 LEU300 GLU301 GLN302 THR303 LEU304 GLU305 GLY306 THR307
Unit 6 SER2 ASN3 ALA4 THR5 LYS6 PHE7 GLY8 LYS9 VAL10 ALA11 VAL12 LEU13 LEU14 GLY15 GLY16 LYS17 SER18 ALA19 GLU20 ARG21 ALA22 VAL23 SER24 LEU25 ASP26 SER27 GLY28 GLN29 ALA30 VAL31 LEU32 ASP33 ALA34 LEU35 LEU36 ARG37 SER38 GLY39 VAL40 GLN41 ALA42 GLU43 ALA44 PHE45 ASP46 PRO47 GLN48 ASP49 ARG50 SER51 VAL52 THR53 GLU54 LEU55 VAL56 ASN57 TYR58 ASP59 ARG60 ALA61 PHE62 ILE63 VAL64 LEU65 HIS66 GLY67 ARG68 GLY69 GLY70 GLU71 ASP72 GLY73 GLN74 ILE75 GLN76 GLY77 VAL78 LEU79 GLU80 TRP81 LEU82 ASN83 ILE84 PRO85 TYR86 THR87 GLY88 THR89 GLY90 VAL91 GLN92 GLY93 SER94 ALA95 ILE96 GLY97 MET98 ASP99 LYS100 VAL101 LYS102 THR103 LYS104 GLN105 ILE106 TRP107 GLN108 GLY109 SER110 ASP111 LEU112 PRO113 THR114 ALA115 PRO116 TYR117 ARG118 ILE119 ILE120 GLU123 THR124 ASP125 LEU126 ASP127 SER128 VAL129 ILE130 ALA131 GLU132 LEU133 ILE138 ILE139 LYS140 PRO141 VAL142 HIS143 GLU144 GLY145 SER146 SER147 VAL148 GLY149 MET150 SER151 LYS152 VAL153 GLU154 LYS155 ALA156 GLU157 ASP158 PHE159 ALA160 ALA161 ALA162 ILE163 GLU164 LYS165 ALA166 THR167 GLN168 HIS169 ASP170 ALA171 VAL172 VAL173 MET174 ALA175 GLU176 LYS177 TRP178 ILE179 THR180 GLY181 ARG182 GLU183 PHE184 THR185 ILE186 SER187 PHE188 LEU189 ASN190 GLY191 GLN192 PRO193 LEU194 PRO195 VAL196 ILE197 ARG198 LEU199 GLN200 TYR221 GLY222 ILE223 PRO224 CYS225 GLY226 LEU227 SER228 GLU229 THR230 GLU231 GLU232 LYS233 LYS234 LEU235 GLN236 ALA237 LEU238 CYS239 LEU240 ARG241 ALA242 PHE243 GLN244 ALA245 VAL246 GLY247 ALA248 GLU249 GLY250 TRP251 GLY252 ARG253 ILE254 ASP255 ALA256 MET257 GLN258 ASP259 GLU260 GLN261 GLY262 ASN263 PHE264 TRP265 LEU266 LEU267 GLU268 VAL269 ASN270 THR271 VAL272 PRO273 GLY274 MET275 THR276 SER277 HIS278 SER279 LEU280 VAL281 PRO282 LYS283 ALA284 ALA285 LYS286 ALA287 VAL288 GLY289 TYR290 SER291 PHE292 ASP293 GLU294 LEU295 CYS296 VAL297 ALA298 ILE299 LEU300 GLU301 GLN302 THR303 LEU304 GLU305

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany