Jena Library of Biological Macromolecules - Home Page [Image Library Home] [Image Library Entry]

Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF DOUBLE TUDOR DOMAIN OF HUMAN LYSINE DEM KDM4A COMPLEXED WITH HISTONE H3K23ME3
Keywords DOUBLE TUDOR DOMAIN, READER DOMAIN, STRUCTURAL GENOMICS, PSI PROTEIN STRUCTURE INITIATIVE, ENZYME DISCOVERY FOR NATURAL BIOSYNTHESIS, NATPRO, OXIDOREDUCTASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   5D6Y     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   LYSINE-SPECIFIC DEMETHYLASE 4A  A 108 867 0
2  Protein   PEPTIDE H3K23ME3 (19-28)  a 9 59 12
3  Protein   LYSINE-SPECIFIC DEMETHYLASE 4A  B 108 867 0
4  Protein   PEPTIDE H3K23ME3 (19-28)  b 9 59 12
5  Protein   LYSINE-SPECIFIC DEMETHYLASE 4A  C 104 831 0
6  Protein   PEPTIDE H3K23ME3 (19-28)  c 7 41 12
7  Protein   LYSINE-SPECIFIC DEMETHYLASE 4A  D 104 831 0
8  Protein   PEPTIDE H3K23ME3 (19-28)  d 7 41 12
9  Protein   LYSINE-SPECIFIC DEMETHYLASE 4A  E 107 836 0
10  Protein   LYSINE-SPECIFIC DEMETHYLASE 4A  F 108 837 0
11 Water     216 0 216
total       887 5269 264

Proteins
Unit 1 SER898 ILE899 THR900 ALA901 GLY902 GLN903 LYS904 VAL905 ILE906 SER907 LYS908 HIS909 LYS910 ASN911 GLY912 ARG913 PHE914 TYR915 GLN916 CYS917 GLU918 VAL919 VAL920 ARG921 LEU922 THR923 THR924 GLU925 THR926 PHE927 TYR928 GLU929 VAL930 ASN931 PHE932 ASP933 ASP934 GLY935 SER936 PHE937 SER938 ASP939 ASN940 LEU941 TYR942 PRO943 GLU944 ASP945 ILE946 VAL947 SER948 GLN949 ASP950 CYS951 LEU952 GLN953 PHE954 GLY955 PRO956 PRO957 ALA958 GLU959 GLY960 GLU961 VAL962 VAL963 GLN964 VAL965 ARG966 TRP967 THR968 ASP969 GLY970 GLN971 VAL972 TYR973 GLY974 ALA975 LYS976 PHE977 VAL978 ALA979 SER980 HIS981 PRO982 ILE983 GLN984 MET985 TYR986 GLN987 VAL988 GLU989 PHE990 GLU991 ASP992 GLY993 SER994 GLN995 LEU996 VAL997 VAL998 LYS999 ARG1000 ASP1001 ASP1002 VAL1003 TYR1004 THR1005
Unit 2 GLN19 LEU20 ALA21 THR22 M3L23 ALA24 ALA25 ARG26 LYS27
Unit 3 SER898 ILE899 THR900 ALA901 GLY902 GLN903 LYS904 VAL905 ILE906 SER907 LYS908 HIS909 LYS910 ASN911 GLY912 ARG913 PHE914 TYR915 GLN916 CYS917 GLU918 VAL919 VAL920 ARG921 LEU922 THR923 THR924 GLU925 THR926 PHE927 TYR928 GLU929 VAL930 ASN931 PHE932 ASP933 ASP934 GLY935 SER936 PHE937 SER938 ASP939 ASN940 LEU941 TYR942 PRO943 GLU944 ASP945 ILE946 VAL947 SER948 GLN949 ASP950 CYS951 LEU952 GLN953 PHE954 GLY955 PRO956 PRO957 ALA958 GLU959 GLY960 GLU961 VAL962 VAL963 GLN964 VAL965 ARG966 TRP967 THR968 ASP969 GLY970 GLN971 VAL972 TYR973 GLY974 ALA975 LYS976 PHE977 VAL978 ALA979 SER980 HIS981 PRO982 ILE983 GLN984 MET985 TYR986 GLN987 VAL988 GLU989 PHE990 GLU991 ASP992 GLY993 SER994 GLN995 LEU996 VAL997 VAL998 LYS999 ARG1000 ASP1001 ASP1002 VAL1003 TYR1004 THR1005
Unit 4 GLN19 LEU20 ALA21 THR22 M3L23 ALA24 ALA25 ARG26 LYS27
Unit 5 SER898 ILE899 THR900 ALA901 GLY902 GLN903 LYS904 VAL905 ILE906 SER907 LYS908 HIS909 LYS910 ASN911 GLY912 ARG913 PHE914 TYR915 GLN916 CYS917 GLU918 VAL919 VAL920 ARG921 LEU922 THR923 THR924 GLU925 THR926 PHE927 TYR928 GLU929 VAL930 ASN931 PHE932 ASP933 ASP934 GLY935 SER936 PHE937 SER938 ASP939 ASN940 LEU941 TYR942 PRO943 GLU944 ASP945 ILE946 VAL947 SER948 GLN949 ASP950 CYS951 LEU952 GLN953 PHE954 GLY955 PRO956 PRO957 ALA958 GLU959 GLY960 GLU961 VAL962 VAL963 GLN964 VAL965 ARG966 TRP967 THR968 ASP969 GLY970 GLN971 VAL972 TYR973 GLY974 ALA975 LYS976 PHE977 VAL978 ALA979 SER980 HIS981 PRO982 ILE983 GLN984 MET985 TYR986 GLN987 VAL988 GLU989 PHE990 GLY993 SER994 GLN995 LEU996 VAL997 VAL998 LYS999 ARG1000 ASP1001 ASP1002 VAL1003
Unit 6 LEU20 ALA21 THR22 M3L23 ALA24 ALA25 ARG26
Unit 7 SER898 ILE899 THR900 ALA901 GLY902 GLN903 LYS904 VAL905 ILE906 SER907 LYS908 HIS909 LYS910 ASN911 GLY912 ARG913 PHE914 TYR915 GLN916 CYS917 GLU918 VAL919 VAL920 ARG921 LEU922 THR923 THR924 GLU925 THR926 PHE927 TYR928 GLU929 VAL930 ASN931 PHE932 ASP933 ASP934 GLY935 SER936 PHE937 SER938 ASP939 ASN940 LEU941 TYR942 PRO943 GLU944 ASP945 ILE946 VAL947 SER948 GLN949 ASP950 CYS951 LEU952 GLN953 PHE954 GLY955 PRO956 PRO957 ALA958 GLU959 GLY960 GLU961 VAL962 VAL963 GLN964 VAL965 ARG966 TRP967 THR968 ASP969 GLY970 GLN971 VAL972 TYR973 GLY974 ALA975 LYS976 PHE977 VAL978 ALA979 SER980 HIS981 PRO982 ILE983 GLN984 MET985 TYR986 GLN987 VAL988 GLU989 PHE990 GLY993 SER994 GLN995 LEU996 VAL997 VAL998 LYS999 ARG1000 ASP1001 ASP1002 VAL1003
Unit 8 LEU20 ALA21 THR22 M3L23 ALA24 ALA25 ARG26
Unit 9 SER898 ILE899 THR900 ALA901 GLY902 GLN903 LYS904 VAL905 ILE906 SER907 LYS908 HIS909 LYS910 ASN911 GLY912 ARG913 PHE914 TYR915 GLN916 CYS917 GLU918 VAL919 VAL920 ARG921 LEU922 THR923 THR924 GLU925 THR926 PHE927 TYR928 GLU929 VAL930 ASN931 PHE932 ASP933 ASP934 GLY935 SER936 PHE937 SER938 ASP939 ASN940 LEU941 TYR942 PRO943 GLU944 ASP945 ILE946 VAL947 SER948 GLN949 ASP950 CYS951 LEU952 GLN953 PHE954 GLY955 PRO956 PRO957 ALA958 GLU959 GLY960 GLU961 VAL962 VAL963 GLN964 VAL965 TRP967 THR968 ASP969 GLY970 GLN971 VAL972 TYR973 GLY974 ALA975 LYS976 PHE977 VAL978 ALA979 SER980 HIS981 PRO982 ILE983 GLN984 MET985 TYR986 GLN987 VAL988 GLU989 PHE990 GLU991 ASP992 GLY993 SER994 GLN995 LEU996 VAL997 VAL998 LYS999 ARG1000 ASP1001 ASP1002 VAL1003 TYR1004 THR1005
Unit 10 SER898 ILE899 THR900 ALA901 GLY902 GLN903 LYS904 VAL905 ILE906 SER907 LYS908 HIS909 LYS910 ASN911 GLY912 ARG913 PHE914 TYR915 GLN916 CYS917 GLU918 VAL919 VAL920 ARG921 LEU922 THR923 THR924 GLU925 THR926 PHE927 TYR928 GLU929 VAL930 ASN931 PHE932 ASP933 ASP934 GLY935 SER936 PHE937 SER938 ASP939 ASN940 LEU941 TYR942 PRO943 GLU944 ASP945 ILE946 VAL947 SER948 GLN949 ASP950 CYS951 LEU952 GLN953 PHE954 GLY955 PRO956 PRO957 ALA958 GLU959 GLY960 GLU961 VAL962 VAL963 GLN964 VAL965 ARG966 TRP967 THR968 ASP969 GLY970 GLN971 VAL972 TYR973 GLY974 ALA975 LYS976 PHE977 VAL978 ALA979 SER980 HIS981 PRO982 ILE983 GLN984 MET985 TYR986 GLN987 VAL988 GLU989 PHE990 GLU991 ASP992 GLY993 SER994 GLN995 LEU996 VAL997 VAL998 LYS999 ARG1000 ASP1001 ASP1002 VAL1003 TYR1004 THR1005

Go to    [Image Library Home]    [Image Library Entry]
Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany