5D1L - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF UBCH5B IN COMPLEX WITH THE RING-U5BR FR AO7 (Y165A)
• Keywords: UBIQUITIN LIGASE, UBIQUITIN CONJUGATING ENZYME, UBIQUITYLATI UBIQUITIN, LIGASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5D1L	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	UBIQUITIN-CONJUGATING ENZYME E2 D2	A	146	1170	0
2	Protein	E3 UBIQUITIN-PROTEIN LIGASE RNF25	B	111	900	0
3	Ligand	UBIQUITIN-CONJUGATING ENZYME E2 D2	A	2	0	13
4	Ligand	E3 UBIQUITIN-PROTEIN LIGASE RNF25	B	2	0	2
5	Water			385	0	385
total				646	2070	400

Proteins

Unit 1

ALA 2 LEU 3 LYS 4 ARG 5 ILE 6 HIS 7 LYS 8 GLU 9 LEU 10 ASN 11 ASP 12 LEU 13 ALA 14 ARG 15 ASP 16 PRO 17 PRO 18 ALA 19 GLN 20 CYS 21 SER 22 ALA 23 GLY 24 PRO 25 VAL 26 GLY 27 ASP 28 ASP 29 MET 30 PHE 31 HIS 32 TRP 33 GLN 34 ALA 35 THR 36 ILE 37 MET 38 GLY 39 PRO 40 ASN 41 ASP 42 SER 43 PRO 44 TYR 45 GLN 46 GLY 47 GLY 48 VAL 49 PHE 50 PHE 51 LEU 52 THR 53 ILE 54 HIS 55 PHE 56 PRO 57 THR 58 ASP 59 TYR 60 PRO 61 PHE 62 LYS 63 PRO 64 PRO 65 LYS 66 VAL 67 ALA 68 PHE 69 THR 70 THR 71 ARG 72 ILE 73 TYR 74 HIS 75 PRO 76 ASN 77 ILE 78 ASN 79 SER 80 ASN 81 GLY 82 SER 83 ILE 84 CYS 85 LEU 86 ASP 87 ILE 88 LEU 89 ARG 90 SER 91 GLN 92 TRP 93 SER 94 PRO 95 ALA 96 LEU 97 THR 98 ILE 99 SER 100 LYS 101 VAL 102 LEU 103 LEU 104 SER 105 ILE 106 CYS 107 SER 108 LEU 109 LEU 110 CYS 111 ASP 112 PRO 113 ASN 114 PRO 115 ASP 116 ASP 117 PRO 118 LEU 119 VAL 120 PRO 121 GLU 122 ILE 123 ALA 124 ARG 125 ILE 126 TYR 127 LYS 128 THR 129 ASP 130 ARG 131 GLU 132 LYS 133 TYR 134 ASN 135 ARG 136 ILE 137 ALA 138 ARG 139 GLU 140 TRP 141 THR 142 GLN 143 LYS 144 TYR 145 ALA 146 MET 147

Unit 2

ASN 129 ILE 130 PRO 131 HIS 132 GLY 133 GLN 134 CYS 135 VAL 136 ILE 137 CYS 138 LEU 139 TYR 140 GLY 141 PHE 142 GLN 143 GLU 144 LYS 145 GLU 146 ALA 147 PHE 148 THR 149 LYS 150 THR 151 PRO 152 CYS 153 TYR 154 HIS 155 TYR 156 PHE 157 HIS 158 CYS 159 HIS 160 CYS 161 LEU 162 ALA 163 ARG 164 ALA 165 ILE 166 GLN 167 HIS 168 MET 169 GLU 170 GLN 171 GLU 172 LEU 173 LYS 174 ALA 175 GLN 176 GLY 177 VAL 194 GLY 195 VAL 196 GLN 197 CYS 198 PRO 199 VAL 200 CYS 201 ARG 202 GLU 203 PRO 204 LEU 205 VAL 206 TYR 207 ASP 208 LEU 209 ALA 210 SER 211 LEU 212 LYS 213 ALA 214 ALA 215 PRO 216 GLU 217 PRO 218 GLN 219 GLN 220 PRO 221 MET 222 GLU 223 LEU 224 TYR 225 GLN 226 PRO 227 SER 228 ALA 229 GLU 230 SER 231 LEU 232 ARG 233 GLN 234 GLN 235 GLU 236 GLU 237 ARG 238 LYS 239 ARG 240 LEU 241 TYR 242 GLN 243 ARG 244 GLN 245 GLN 246 GLU 247 ARG 248 GLY 249 GLY 250 ILE 251 ILE 252 ASP 253 LEU 254 GLU 255

Ligands

Unit 3	PEG 401 OXL 402
Unit 4	ZN 301 ZN 302