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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF UBE2D2:RNF165:UB COMPLEX
Keywords COMPLEX, UBIQUITIN, LIGASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5D0K     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   UBIQUITIN-CONJUGATING ENZYME E2 D2  A 148 1183 0
2  Protein   RING FINGER PROTEIN 165  C 69 566 0
3  Protein   UBIQUITIN-CONJUGATING ENZYME E2 D2  D 148 1183 0
4  Protein   RING FINGER PROTEIN 165  F 68 549 0
5  Protein   UBIQUITIN-CONJUGATING ENZYME E2 D2  G 148 1183 0
6  Protein   RING FINGER PROTEIN 165  I 68 562 0
7  Protein   UBIQUITIN-CONJUGATING ENZYME E2 D2  J 148 1183 0
8  Protein   RING FINGER PROTEIN 165  L 68 562 0
9  Protein   POLYUBIQUITIN-B  B 76 595 0
10  Protein   POLYUBIQUITIN-B  E 76 595 0
11  Protein   POLYUBIQUITIN-B  H 76 595 0
12  Protein   POLYUBIQUITIN-B  K 76 595 0
13  Ligand   RING FINGER PROTEIN 165  C 2 0 2
14  Ligand   RING FINGER PROTEIN 165  F 2 0 2
15  Ligand   RING FINGER PROTEIN 165  I 2 0 2
16  Ligand   RING FINGER PROTEIN 165  L 2 0 2
17 Water     2 0 3
total       1179 9351 11
Proteins
Unit 1 SER0 MET1 ALA2 LEU3 LYS4 ARG5 ILE6 HIS7 LYS8 GLU9 LEU10 ASN11 ASP12 LEU13 ALA14 ARG15 ASP16 PRO17 PRO18 ALA19 GLN20 SER21 SER22 ALA23 GLY24 PRO25 VAL26 GLY27 ASP28 ASP29 MET30 PHE31 HIS32 TRP33 GLN34 ALA35 THR36 ILE37 MET38 GLY39 PRO40 ASN41 ASP42 SER43 PRO44 TYR45 GLN46 GLY47 GLY48 VAL49 PHE50 PHE51 LEU52 THR53 ILE54 HIS55 PHE56 PRO57 THR58 ASP59 TYR60 PRO61 PHE62 LYS63 PRO64 PRO65 LYS66 VAL67 ALA68 PHE69 THR70 THR71 ARG72 ILE73 TYR74 HIS75 PRO76 ASN77 ILE78 ASN79 SER80 ASN81 GLY82 SER83 ILE84 LYS85 LEU86 ASP87 ILE88 LEU89 ARG90 SER91 GLN92 TRP93 SER94 PRO95 ALA96 LEU97 THR98 ILE99 SER100 LYS101 VAL102 LEU103 LEU104 SER105 ILE106 SER107 SER108 LEU109 LEU110 SER111 ASP112 PRO113 ASN114 PRO115 ASP116 ASP117 PRO118 LEU119 VAL120 PRO121 GLU122 ILE123 ALA124 ARG125 ILE126 TYR127 LYS128 THR129 ASP130 ARG131 GLU132 LYS133 TYR134 ASN135 ARG136 ILE137 ALA138 ARG139 GLU140 TRP141 THR142 GLN143 LYS144 TYR145 ALA146 MET147
Unit 2 VAL257 GLN258 ASN259 THR260 ILE261 GLU262 ARG263 PHE264 THR265 PHE266 PRO267 HIS268 LYS269 TYR270 LYS271 LYS272 THR290 ASP291 GLU292 LYS293 CYS294 THR295 ILE296 CYS297 LEU298 SER299 MET300 LEU301 GLU302 ASP303 GLY304 GLU305 ASP306 VAL307 ARG308 ARG309 LEU310 PRO311 CYS312 MET313 HIS314 LEU315 PHE316 HIS317 GLN318 LEU319 CYS320 VAL321 ASP322 GLN323 TRP324 LEU325 ALA326 MET327 SER328 LYS329 LYS330 CYS331 PRO332 ILE333 CYS334 ARG335 VAL336 ASP337 ILE338 GLU339 THR340 GLN341 LEU342
Unit 3 SER0 MET1 ALA2 LEU3 LYS4 ARG5 ILE6 HIS7 LYS8 GLU9 LEU10 ASN11 ASP12 LEU13 ALA14 ARG15 ASP16 PRO17 PRO18 ALA19 GLN20 SER21 SER22 ALA23 GLY24 PRO25 VAL26 GLY27 ASP28 ASP29 MET30 PHE31 HIS32 TRP33 GLN34 ALA35 THR36 ILE37 MET38 GLY39 PRO40 ASN41 ASP42 SER43 PRO44 TYR45 GLN46 GLY47 GLY48 VAL49 PHE50 PHE51 LEU52 THR53 ILE54 HIS55 PHE56 PRO57 THR58 ASP59 TYR60 PRO61 PHE62 LYS63 PRO64 PRO65 LYS66 VAL67 ALA68 PHE69 THR70 THR71 ARG72 ILE73 TYR74 HIS75 PRO76 ASN77 ILE78 ASN79 SER80 ASN81 GLY82 SER83 ILE84 LYS85 LEU86 ASP87 ILE88 LEU89 ARG90 SER91 GLN92 TRP93 SER94 PRO95 ALA96 LEU97 THR98 ILE99 SER100 LYS101 VAL102 LEU103 LEU104 SER105 ILE106 SER107 SER108 LEU109 LEU110 SER111 ASP112 PRO113 ASN114 PRO115 ASP116 ASP117 PRO118 LEU119 VAL120 PRO121 GLU122 ILE123 ALA124 ARG125 ILE126 TYR127 LYS128 THR129 ASP130 ARG131 GLU132 LYS133 TYR134 ASN135 ARG136 ILE137 ALA138 ARG139 GLU140 TRP141 THR142 GLN143 LYS144 TYR145 ALA146 MET147
Unit 4 GLN258 ASN259 THR260 ILE261 GLU262 ARG263 PHE264 THR265 PHE266 PRO267 HIS268 LYS269 TYR270 LYS271 LYS272 THR290 ASP291 GLU292 LYS293 CYS294 THR295 ILE296 CYS297 LEU298 SER299 MET300 LEU301 GLU302 ASP303 GLY304 GLU305 ASP306 VAL307 ARG308 ARG309 LEU310 PRO311 CYS312 MET313 HIS314 LEU315 PHE316 HIS317 GLN318 LEU319 CYS320 VAL321 ASP322 GLN323 TRP324 LEU325 ALA326 MET327 SER328 LYS329 LYS330 CYS331 PRO332 ILE333 CYS334 ARG335 VAL336 ASP337 ILE338 GLU339 THR340 GLN341 LEU342
Unit 5 SER0 MET1 ALA2 LEU3 LYS4 ARG5 ILE6 HIS7 LYS8 GLU9 LEU10 ASN11 ASP12 LEU13 ALA14 ARG15 ASP16 PRO17 PRO18 ALA19 GLN20 SER21 SER22 ALA23 GLY24 PRO25 VAL26 GLY27 ASP28 ASP29 MET30 PHE31 HIS32 TRP33 GLN34 ALA35 THR36 ILE37 MET38 GLY39 PRO40 ASN41 ASP42 SER43 PRO44 TYR45 GLN46 GLY47 GLY48 VAL49 PHE50 PHE51 LEU52 THR53 ILE54 HIS55 PHE56 PRO57 THR58 ASP59 TYR60 PRO61 PHE62 LYS63 PRO64 PRO65 LYS66 VAL67 ALA68 PHE69 THR70 THR71 ARG72 ILE73 TYR74 HIS75 PRO76 ASN77 ILE78 ASN79 SER80 ASN81 GLY82 SER83 ILE84 LYS85 LEU86 ASP87 ILE88 LEU89 ARG90 SER91 GLN92 TRP93 SER94 PRO95 ALA96 LEU97 THR98 ILE99 SER100 LYS101 VAL102 LEU103 LEU104 SER105 ILE106 SER107 SER108 LEU109 LEU110 SER111 ASP112 PRO113 ASN114 PRO115 ASP116 ASP117 PRO118 LEU119 VAL120 PRO121 GLU122 ILE123 ALA124 ARG125 ILE126 TYR127 LYS128 THR129 ASP130 ARG131 GLU132 LYS133 TYR134 ASN135 ARG136 ILE137 ALA138 ARG139 GLU140 TRP141 THR142 GLN143 LYS144 TYR145 ALA146 MET147
Unit 6 GLN258 ASN259 THR260 ILE261 GLU262 ARG263 PHE264 THR265 PHE266 PRO267 HIS268 LYS269 TYR270 LYS271 LYS272 THR290 ASP291 GLU292 LYS293 CYS294 THR295 ILE296 CYS297 LEU298 SER299 MET300 LEU301 GLU302 ASP303 GLY304 GLU305 ASP306 VAL307 ARG308 ARG309 LEU310 PRO311 CYS312 MET313 HIS314 LEU315 PHE316 HIS317 GLN318 LEU319 CYS320 VAL321 ASP322 GLN323 TRP324 LEU325 ALA326 MET327 SER328 LYS329 LYS330 CYS331 PRO332 ILE333 CYS334 ARG335 VAL336 ASP337 ILE338 GLU339 THR340 GLN341 LEU342
Unit 7 SER0 MET1 ALA2 LEU3 LYS4 ARG5 ILE6 HIS7 LYS8 GLU9 LEU10 ASN11 ASP12 LEU13 ALA14 ARG15 ASP16 PRO17 PRO18 ALA19 GLN20 SER21 SER22 ALA23 GLY24 PRO25 VAL26 GLY27 ASP28 ASP29 MET30 PHE31 HIS32 TRP33 GLN34 ALA35 THR36 ILE37 MET38 GLY39 PRO40 ASN41 ASP42 SER43 PRO44 TYR45 GLN46 GLY47 GLY48 VAL49 PHE50 PHE51 LEU52 THR53 ILE54 HIS55 PHE56 PRO57 THR58 ASP59 TYR60 PRO61 PHE62 LYS63 PRO64 PRO65 LYS66 VAL67 ALA68 PHE69 THR70 THR71 ARG72 ILE73 TYR74 HIS75 PRO76 ASN77 ILE78 ASN79 SER80 ASN81 GLY82 SER83 ILE84 LYS85 LEU86 ASP87 ILE88 LEU89 ARG90 SER91 GLN92 TRP93 SER94 PRO95 ALA96 LEU97 THR98 ILE99 SER100 LYS101 VAL102 LEU103 LEU104 SER105 ILE106 SER107 SER108 LEU109 LEU110 SER111 ASP112 PRO113 ASN114 PRO115 ASP116 ASP117 PRO118 LEU119 VAL120 PRO121 GLU122 ILE123 ALA124 ARG125 ILE126 TYR127 LYS128 THR129 ASP130 ARG131 GLU132 LYS133 TYR134 ASN135 ARG136 ILE137 ALA138 ARG139 GLU140 TRP141 THR142 GLN143 LYS144 TYR145 ALA146 MET147
Unit 8 GLN258 ASN259 THR260 ILE261 GLU262 ARG263 PHE264 THR265 PHE266 PRO267 HIS268 LYS269 TYR270 LYS271 LYS272 THR290 ASP291 GLU292 LYS293 CYS294 THR295 ILE296 CYS297 LEU298 SER299 MET300 LEU301 GLU302 ASP303 GLY304 GLU305 ASP306 VAL307 ARG308 ARG309 LEU310 PRO311 CYS312 MET313 HIS314 LEU315 PHE316 HIS317 GLN318 LEU319 CYS320 VAL321 ASP322 GLN323 TRP324 LEU325 ALA326 MET327 SER328 LYS329 LYS330 CYS331 PRO332 ILE333 CYS334 ARG335 VAL336 ASP337 ILE338 GLU339 THR340 GLN341 LEU342
Unit 9 MET1 GLN2 ILE3 PHE4 VAL5 LYS6 THR7 LEU8 THR9 GLY10 LYS11 THR12 ILE13 THR14 LEU15 GLU16 VAL17 GLU18 PRO19 SER20 ASP21 THR22 ILE23 GLU24 ASN25 VAL26 LYS27 ALA28 LYS29 ILE30 GLN31 ASP32 LYS33 GLU34 GLY35 ILE36 PRO37 PRO38 ASP39 GLN40 GLN41 ARG42 LEU43 ILE44 PHE45 ALA46 GLY47 LYS48 GLN49 LEU50 GLU51 ASP52 GLY53 ARG54 THR55 LEU56 SER57 ASP58 TYR59 ASN60 ILE61 GLN62 LYS63 GLU64 SER65 THR66 LEU67 HIS68 LEU69 VAL70 LEU71 ARG72 LEU73 ARG74 GLY75 GLY76
Unit 10 MET1 GLN2 ILE3 PHE4 VAL5 LYS6 THR7 LEU8 THR9 GLY10 LYS11 THR12 ILE13 THR14 LEU15 GLU16 VAL17 GLU18 PRO19 SER20 ASP21 THR22 ILE23 GLU24 ASN25 VAL26 LYS27 ALA28 LYS29 ILE30 GLN31 ASP32 LYS33 GLU34 GLY35 ILE36 PRO37 PRO38 ASP39 GLN40 GLN41 ARG42 LEU43 ILE44 PHE45 ALA46 GLY47 LYS48 GLN49 LEU50 GLU51 ASP52 GLY53 ARG54 THR55 LEU56 SER57 ASP58 TYR59 ASN60 ILE61 GLN62 LYS63 GLU64 SER65 THR66 LEU67 HIS68 LEU69 VAL70 LEU71 ARG72 LEU73 ARG74 GLY75 GLY76
Unit 11 MET1 GLN2 ILE3 PHE4 VAL5 LYS6 THR7 LEU8 THR9 GLY10 LYS11 THR12 ILE13 THR14 LEU15 GLU16 VAL17 GLU18 PRO19 SER20 ASP21 THR22 ILE23 GLU24 ASN25 VAL26 LYS27 ALA28 LYS29 ILE30 GLN31 ASP32 LYS33 GLU34 GLY35 ILE36 PRO37 PRO38 ASP39 GLN40 GLN41 ARG42 LEU43 ILE44 PHE45 ALA46 GLY47 LYS48 GLN49 LEU50 GLU51 ASP52 GLY53 ARG54 THR55 LEU56 SER57 ASP58 TYR59 ASN60 ILE61 GLN62 LYS63 GLU64 SER65 THR66 LEU67 HIS68 LEU69 VAL70 LEU71 ARG72 LEU73 ARG74 GLY75 GLY76
Unit 12 MET1 GLN2 ILE3 PHE4 VAL5 LYS6 THR7 LEU8 THR9 GLY10 LYS11 THR12 ILE13 THR14 LEU15 GLU16 VAL17 GLU18 PRO19 SER20 ASP21 THR22 ILE23 GLU24 ASN25 VAL26 LYS27 ALA28 LYS29 ILE30 GLN31 ASP32 LYS33 GLU34 GLY35 ILE36 PRO37 PRO38 ASP39 GLN40 GLN41 ARG42 LEU43 ILE44 PHE45 ALA46 GLY47 LYS48 GLN49 LEU50 GLU51 ASP52 GLY53 ARG54 THR55 LEU56 SER57 ASP58 TYR59 ASN60 ILE61 GLN62 LYS63 GLU64 SER65 THR66 LEU67 HIS68 LEU69 VAL70 LEU71 ARG72 LEU73 ARG74 GLY75 GLY76
Ligands
Unit 13 ZN401 ZN402
Unit 14 ZN401 ZN402
Unit 15 ZN401 ZN402
Unit 16 ZN401 ZN402
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany