Jena Library of Biological Macromolecules - Home Page [Image Library Home] [Image Library Entry]

Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF STAPHYLOCOCCUS AUREUS CAS9 IN COMPLEX W AND TARGET DNA (TTGAAT PAM)
Keywords CRISPR-CAS9, GENOME ENGINEERING, HYDROLASE-RNA-DNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5CZZ     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   CRISPR-ASSOCIATED ENDONUCLEASE CAS9  A 1043 8419 0
2  DNA/RNA    B 73 1545 0
3  Other macromolecule   DNA (28-MER)  C 28 561 0
4  Other macromolecule   DNA (5'-D(*TP*TP*GP*AP*AP*TP*AP*G)-3')  D 8 164 0
5  Ligand   CRISPR-ASSOCIATED ENDONUCLEASE CAS9  A 3 0 3
6  Ligand   RNA (73-MER)  B 3 0 10
7  Ligand   DNA (28-MER)  C 1 0 1
8  Ligand   DNA (5'-D(*TP*TP*GP*AP*AP*TP*AP*G)-3')  D 1 0 4
9 Water     85 0 85
total       1245 10689 103
Proteins
Unit 1 ARG3 ASN4 TYR5 ILE6 LEU7 GLY8 LEU9 ASP10 ILE11 GLY12 ILE13 THR14 SER15 VAL16 GLY17 TYR18 GLY19 ILE20 ILE21 ASP22 TYR23 GLU24 THR25 ARG26 ASP27 VAL28 ILE29 ASP30 ALA31 GLY32 VAL33 ARG34 LEU35 PHE36 LYS37 GLU38 ALA39 ASN40 VAL41 GLU42 ASN43 ASN44 GLU45 GLY46 ARG47 ARG48 SER49 LYS50 ARG51 GLY52 ALA53 ARG54 ARG55 LEU56 LYS57 ARG58 ARG59 ARG60 ARG61 HIS62 ARG63 ILE64 GLN65 ARG66 VAL67 LYS68 LYS69 LEU70 LEU71 PHE72 ASP73 TYR74 ASN75 LEU76 LEU77 THR78 ASP79 HIS80 SER81 GLU82 LEU83 SER84 GLY85 ILE86 ASN87 PRO88 TYR89 GLU90 ALA91 ARG92 VAL93 LYS94 GLY95 LEU96 SER97 GLN98 LYS99 LEU100 SER101 GLU102 GLU103 GLU104 PHE105 SER106 ALA107 ALA108 LEU109 LEU110 HIS111 LEU112 ALA113 LYS114 ARG115 ARG116 GLY117 VAL118 HIS119 ASN120 VAL121 ASN122 GLU123 VAL124 GLU125 GLU126 ASP127 THR128 GLY129 ASN130 GLU131 LEU132 SER133 THR134 LYS135 GLU136 GLN137 ILE138 SER139 ARG140 ASN141 SER142 LYS143 ALA144 LEU145 GLU146 GLU147 LYS148 TYR149 VAL150 ALA151 GLU152 LEU153 GLN154 LEU155 GLU156 ARG157 LEU158 LYS159 LYS160 ASP161 GLY162 GLU163 VAL164 ARG165 GLY166 SER167 ILE168 ASN169 ARG170 PHE171 LYS172 THR173 SER174 ASP175 TYR176 VAL177 LYS178 GLU179 ALA180 LYS181 GLN182 LEU183 LEU184 LYS185 VAL186 GLN187 LYS188 ALA189 TYR190 HIS191 GLN192 LEU193 ASP194 GLN195 SER196 PHE197 ILE198 ASP199 THR200 TYR201 ILE202 ASP203 LEU204 LEU205 GLU206 THR207 ARG208 ARG209 THR210 TYR211 TYR212 GLU213 GLY214 PRO215 GLY216 GLU217 GLY218 SER219 PRO220 PHE221 GLY222 TRP223 LYS224 ASP225 ILE226 LYS227 GLU228 TRP229 TYR230 GLU231 MET232 LEU233 MET234 GLY235 HIS236 CYS237 THR238 TYR239 PHE240 PRO241 GLU242 GLU243 LEU244 ARG245 SER246 VAL247 LYS248 TYR249 ALA250 TYR251 ASN252 ALA253 ASP254 LEU255 TYR256 ASN257 ALA258 LEU259 ASN260 ASP261 LEU262 ASN263 ASN264 LEU265 VAL266 ILE267 THR268 ARG269 ASP270 GLU271 ASN272 GLU273 LYS274 LEU275 GLU276 TYR277 TYR278 GLU279 LYS280 PHE281 GLN282 ILE283 ILE284 GLU285 ASN286 VAL287 PHE288 LYS289 GLN290 LYS291 LYS292 LYS293 PRO294 THR295 LEU296 LYS297 GLN298 ILE299 ALA300 LYS301 GLU302 ILE303 LEU304 VAL305 ASN306 GLU307 GLU308 ASP309 ILE310 LYS311 GLY312 TYR313 ARG314 VAL315 THR316 SER317 THR318 GLY319 LYS320 PRO321 GLU322 PHE323 THR324 ASN325 LEU326 LYS327 VAL328 TYR329 HIS330 ASP331 ILE332 LYS333 ASP334 ILE335 THR336 ALA337 ARG338 LYS339 GLU340 ILE341 ILE342 GLU343 ASN344 ALA345 GLU346 LEU347 LEU348 ASP349 GLN350 ILE351 ALA352 LYS353 ILE354 LEU355 THR356 ILE357 TYR358 GLN359 SER360 SER361 GLU362 ASP363 ILE364 GLN365 GLU366 GLU367 LEU368 THR369 ASN370 LEU371 ASN372 SER373 GLU374 LEU375 THR376 GLN377 GLU378 GLU379 ILE380 GLU381 GLN382 ILE383 SER384 ASN385 LEU386 LYS387 GLY388 TYR389 THR390 GLY391 THR392 HIS393 ASN394 LEU395 SER396 LEU397 LYS398 ALA399 ILE400 ASN401 LEU402 ILE403 LEU404 ASP405 GLU406 LEU407 TRP408 HIS409 THR410 ASN411 ASP412 ASN413 GLN414 ILE415 ALA416 ILE417 PHE418 ASN419 ARG420 LEU421 LYS422 LEU423 VAL424 PRO425 LYS426 LYS427 VAL428 ASP429 LEU430 SER431 GLN432 GLN433 LYS434 GLU435 ILE436 PRO437 THR438 THR439 LEU440 VAL441 ASP442 ASP443 PHE444 ILE445 LEU446 SER447 PRO448 VAL449 VAL450 LYS451 ARG452 SER453 PHE454 ILE455 GLN456 SER457 ILE458 LYS459 VAL460 ILE461 ASN462 ALA463 ILE464 ILE465 LYS466 LYS467 TYR468 GLY469 LEU470 PRO471 ASN472 ASP473 ILE474 ILE475 ILE476 GLU477 LEU478 ALA479 ARG480 GLU481 LYS482 ASN483 SER484 LYS485 ASP486 ALA487 GLN488 LYS489 MET490 ILE491 ASN492 GLU493 MET494 GLN495 LYS496 ARG497 ASN498 ARG499 GLN500 THR501 ASN502 GLU503 ARG504 ILE505 GLU506 GLU507 ILE508 ILE509 ARG510 THR511 THR512 GLY513 LYS514 GLU515 ASN516 ALA517 LYS518 TYR519 LEU520 ILE521 GLU522 LYS523 ILE524 LYS525 LEU526 HIS527 ASP528 MET529 GLN530 GLU531 GLY532 LYS533 CYS534 LEU535 TYR536 SER537 LEU538 GLU539 ALA540 ILE541 PRO542 LEU543 GLU544 ASP545 LEU546 LEU547 ASN548 ASN549 PRO550 PHE551 ASN552 TYR553 GLU554 VAL555 ASP556 HIS557 ILE558 ILE559 PRO560 ARG561 SER562 VAL563 SER564 PHE565 ASP566 ASN567 SER568 PHE569 ASN570 ASN571 LYS572 VAL573 LEU574 VAL575 LYS576 GLN577 GLU578 GLU579 ALA580 SER581 LYS582 LYS583 GLY584 ASN585 ARG586 THR587 PRO588 PHE589 GLN590 TYR591 LEU592 SER593 SER594 SER595 ASP596 SER597 LYS598 ILE599 SER600 TYR601 GLU602 THR603 PHE604 LYS605 LYS606 HIS607 ILE608 LEU609 ASN610 LEU611 ALA612 LYS613 GLY614 LYS615 GLY616 ARG617 ILE618 SER619 LYS620 THR621 LYS622 LYS623 GLU624 TYR625 LEU626 LEU627 GLU628 GLU629 ARG630 ASP631 ILE632 ASN633 ARG634 PHE635 SER636 VAL637 GLN638 LYS639 ASP640 PHE641 ILE642 ASN643 ARG644 ASN645 LEU646 VAL647 ASP648 THR649 ARG650 TYR651 ALA652 THR653 ARG654 GLY655 LEU656 MET657 ASN658 LEU659 LEU660 ARG661 SER662 TYR663 PHE664 ARG665 VAL666 ASN667 ASN668 LEU669 ASP670 VAL671 LYS672 VAL673 LYS674 SER675 ILE676 ASN677 GLY678 GLY679 PHE680 THR681 SER682 PHE683 LEU684 ARG685 ARG686 LYS687 TRP688 LYS689 PHE690 LYS691 LYS692 GLU693 ARG694 ASN695 LYS696 GLY697 TYR698 LYS699 HIS700 HIS701 ALA702 GLU703 ASP704 ALA705 LEU706 ILE707 ILE708 ALA709 ASN710 ALA711 ASP712 PHE713 ILE714 PHE715 LYS716 GLU717 TRP718 LYS719 LYS720 LEU721 ASP722 LYS723 ALA724 LYS725 LYS726 VAL727 MET728 GLU729 ASN730 GLN731 MET732 PHE733 MET741 PRO742 GLU743 ILE744 GLU745 THR746 GLU747 GLN748 GLU749 TYR750 LYS751 GLU752 ILE753 PHE754 ILE755 THR756 PRO757 HIS758 GLN759 ILE760 LYS761 HIS762 ILE763 LYS764 ASP765 PHE766 LYS767 ASP768 TYR769 LYS770 TYR771 SER772 HIS773 ARG774 VAL775 ASP776 LYS777 LYS778 PRO779 ASN780 ARG781 GLU782 LEU783 ILE784 ASN785 ASP786 THR787 LEU788 TYR789 SER790 THR791 ARG792 LYS793 ASP794 ASP795 LYS796 GLY797 ASN798 THR799 LEU800 ILE801 VAL802 ASN803 ASN804 LEU805 ASN806 GLY807 LEU808 TYR809 ASP810 LYS811 ASP812 ASN813 ASP814 LYS815 LEU816 LYS817 LYS818 LEU819 ILE820 ASN821 LYS822 SER823 PRO824 GLU825 LYS826 LEU827 LEU828 MET829 TYR830 HIS831 HIS832 ASP833 PRO834 GLN835 THR836 TYR837 GLN838 LYS839 LEU840 LYS841 LEU842 ILE843 MET844 GLU845 GLN846 TYR847 GLY848 ASP849 GLU850 LYS851 ASN852 PRO853 LEU854 TYR855 LYS856 TYR857 TYR858 GLU859 GLU860 THR861 GLY862 ASN863 TYR864 LEU865 THR866 LYS867 TYR868 SER869 LYS870 LYS871 ASP872 ASN873 GLY874 PRO875 VAL876 ILE877 LYS878 LYS879 ILE880 LYS881 TYR882 TYR883 GLY884 ASN885 LYS886 LEU887 ASN888 ALA889 HIS890 LEU891 ASP892 ILE893 THR894 ASP895 ASP896 TYR897 PRO898 ASN899 SER900 ARG901 ASN902 LYS903 VAL904 VAL905 LYS906 LEU907 SER908 LEU909 LYS910 PRO911 TYR912 ARG913 PHE914 ASP915 VAL916 TYR917 LEU918 ASP919 ASN920 GLY921 VAL922 TYR923 LYS924 PHE925 VAL926 THR927 VAL928 LYS929 ASN930 LEU931 ASP932 VAL933 ILE934 LYS935 LYS936 GLU937 ASN938 TYR939 TYR940 GLU941 VAL942 ASN943 SER944 LYS945 ALA946 TYR947 GLU948 GLU949 ALA950 LYS951 LYS952 LEU953 LYS954 LYS955 ILE956 SER957 ASN958 GLN959 ALA960 GLU961 PHE962 ILE963 ALA964 SER965 PHE966 TYR967 ASN968 ASN969 ASP970 LEU971 ILE972 LYS973 ILE974 ASN975 GLY976 GLU977 LEU978 TYR979 ARG980 VAL981 ILE982 GLY983 VAL984 ASN985 ASN986 ASP987 LEU988 LEU989 ASN990 ARG991 ILE992 GLU993 VAL994 ASN995 MET996 ILE997 ASP998 ILE999 THR1000 TYR1001 ARG1002 GLU1003 TYR1004 LEU1005 GLU1006 ASN1007 MET1008 ASN1009 ASP1010 LYS1011 ARG1012 PRO1013 PRO1014 ARG1015 ILE1016 ILE1017 LYS1018 THR1019 ILE1020 ALA1021 SER1022 LYS1023 THR1024 GLN1025 SER1026 ILE1027 LYS1028 LYS1029 TYR1030 SER1031 THR1032 ASP1033 ILE1034 LEU1035 GLY1036 ASN1037 LEU1038 TYR1039 GLU1040 VAL1041 LYS1042 SER1043 LYS1044 LYS1045 HIS1046 PRO1047 GLN1048 ILE1049 ILE1050 LYS1051 LYS1052
Nucleic acids
Unit 2 G1 G2 A3 A4 A5 U6 U7 A8 G9 G10 U11 G12 C13 G14 C15 U16 U17 G18 G19 C20 G21 U22 U23 U24 U25 A26 G27 U28 A29 C30 U31 C32 U33 G34 G35 A36 A37 A38 C39 A40 G41 A42 A43 U44 C45 U46 A47 C48 U49 A50 A51 A52 A53 C54 A55 A56 G57 G58 C59 A60 A61 A62 A63 U64 G65 C66 C67 G68 U69 G70 U71 U72 U73
Other macromolecules
Unit 3 DC1 DT2 DA3 DT4 DT5 DC6 DA7 DA8 DG9 DC10 DC11 DA12 DA13 DG14 DC15 DG16 DC17 DA18 DC19 DC20 DT21 DA22 DA23 DT24 DT25 DT26 DC27 DC28
Unit 4 DT1 DT2 DG3 DA4 DA5 DT6 DA7 DG8
Ligands
Unit 5 NA1101 NA1102 NA1103
Unit 6 NA101 PO4102 EDO103
Unit 7 NA101
Unit 8 EDO101
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

Go to    [Image Library Home]    [Image Library Entry]
Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany