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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF A RNA-BINDING PROTEIN 39 (RBM39) IN COM FRAGMENT OF SPLICING FACTOR (U2AF) FROM UNKNOWN AT 2.20 A R
Keywords RBM39LINKER (PF15519), RNA RECOGNITION MOTIF (PF13893), STRU GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTE STRUCTURE INITIATIVE, PSI-BIOLOGY, RNA BINDING PROTEIN, PAR FOR T-CELL BIOLOGY, TCELL
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5CXT     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   RNA-BINDING PROTEIN 39  A 111 858 0
2  Protein   SPLICING FACTOR U2AF 65 KDA SUBUNIT  B 9 82 0
3  Protein   RNA-BINDING PROTEIN 39  C 112 872 0
4  Protein   SPLICING FACTOR U2AF 65 KDA SUBUNIT  D 11 91 0
5  Protein   RNA-BINDING PROTEIN 39  E 112 862 0
6  Protein   SPLICING FACTOR U2AF 65 KDA SUBUNIT  F 10 86 0
7  Protein   RNA-BINDING PROTEIN 39  G 112 868 0
8  Protein   SPLICING FACTOR U2AF 65 KDA SUBUNIT  H 11 87 0
9  Protein   RNA-BINDING PROTEIN 39  I 111 859 0
10  Protein   SPLICING FACTOR U2AF 65 KDA SUBUNIT  J 11 87 0
11  Protein   RNA-BINDING PROTEIN 39  K 113 866 0
12  Protein   SPLICING FACTOR U2AF 65 KDA SUBUNIT  L 11 91 0
13  Protein   RNA-BINDING PROTEIN 39  M 111 867 0
14  Protein   SPLICING FACTOR U2AF 65 KDA SUBUNIT  N 11 91 0
15  Protein   RNA-BINDING PROTEIN 39  O 110 851 0
16  Protein   SPLICING FACTOR U2AF 65 KDA SUBUNIT  P 10 86 0
17  Protein   RNA-BINDING PROTEIN 39  Q 112 867 0
18  Protein   SPLICING FACTOR U2AF 65 KDA SUBUNIT  R 10 82 0
19 Water     518 0 518
total       1616 8553 518
Proteins
Unit 1 PRO420 LEU421 ALA422 THR423 GLN424 CYS425 PHE426 GLN427 LEU428 SER429 ASN430 MET431 PHE432 ASN433 PRO434 GLN435 THR436 GLU437 GLU438 GLU439 VAL440 GLY441 TRP442 ASP443 THR444 GLU445 ILE446 LYS447 ASP448 ASP449 VAL450 ILE451 GLU452 GLU453 CYS454 ASN455 LYS456 HIS457 GLY458 GLY459 VAL460 ILE461 HIS462 ILE463 TYR464 VAL465 ASP466 LYS467 TYR468 SER469 ALA470 GLN471 GLY472 ASN473 VAL474 TYR475 VAL476 LYS477 CYS478 PRO479 SER480 ILE481 ALA482 ALA483 ALA484 ILE485 ALA486 ALA487 VAL488 ASN489 ALA490 LEU491 HIS492 GLY493 ARG494 TRP495 PHE496 ALA497 GLY498 LYS499 MET500 ILE501 THR502 ALA503 ALA504 TYR505 VAL506 PRO507 LEU508 PRO509 THR510 TYR511 HIS512 ASN513 LEU514 PHE515 PRO516 ASP517 SER518 MET519 THR520 ALA521 THR522 GLN523 LEU524 LEU525 VAL526 PRO527 SER528 ARG529 ARG530
Unit 2 ARG89 LYS90 TYR91 TRP92 ASP93 VAL94 PRO95 PRO96 PRO97
Unit 3 GLN419 PRO420 LEU421 ALA422 THR423 GLN424 CYS425 PHE426 GLN427 LEU428 SER429 ASN430 MET431 PHE432 ASN433 PRO434 GLN435 THR436 GLU437 GLU438 GLU439 VAL440 GLY441 TRP442 ASP443 THR444 GLU445 ILE446 LYS447 ASP448 ASP449 VAL450 ILE451 GLU452 GLU453 CYS454 ASN455 LYS456 HIS457 GLY458 GLY459 VAL460 ILE461 HIS462 ILE463 TYR464 VAL465 ASP466 LYS467 TYR468 SER469 ALA470 GLN471 GLY472 ASN473 VAL474 TYR475 VAL476 LYS477 CYS478 PRO479 SER480 ILE481 ALA482 ALA483 ALA484 ILE485 ALA486 ALA487 VAL488 ASN489 ALA490 LEU491 HIS492 GLY493 ARG494 TRP495 PHE496 ALA497 GLY498 LYS499 MET500 ILE501 THR502 ALA503 ALA504 TYR505 VAL506 PRO507 LEU508 PRO509 THR510 TYR511 HIS512 ASN513 LEU514 PHE515 PRO516 ASP517 SER518 MET519 THR520 ALA521 THR522 GLN523 LEU524 LEU525 VAL526 PRO527 SER528 ARG529 ARG530
Unit 4 VAL88 ARG89 LYS90 TYR91 TRP92 ASP93 VAL94 PRO95 PRO96 PRO97 GLY98
Unit 5 VAL418 GLN419 PRO420 LEU421 ALA422 THR423 GLN424 CYS425 PHE426 GLN427 LEU428 SER429 ASN430 MET431 PHE432 ASN433 PRO434 GLN435 THR436 GLU437 GLU438 GLU439 VAL440 GLY441 TRP442 ASP443 THR444 GLU445 ILE446 LYS447 ASP448 ASP449 VAL450 ILE451 GLU452 GLU453 CYS454 ASN455 LYS456 HIS457 GLY458 GLY459 VAL460 ILE461 HIS462 ILE463 TYR464 VAL465 ASP466 LYS467 TYR468 SER469 ALA470 GLN471 GLY472 ASN473 VAL474 TYR475 VAL476 LYS477 CYS478 PRO479 SER480 ILE481 ALA482 ALA483 ALA484 ILE485 ALA486 ALA487 VAL488 ASN489 ALA490 LEU491 HIS492 GLY493 ARG494 TRP495 PHE496 ALA497 GLY498 LYS499 MET500 ILE501 THR502 ALA503 ALA504 TYR505 VAL506 PRO507 LEU508 PRO509 THR510 TYR511 HIS512 ASN513 LEU514 PHE515 PRO516 ASP517 SER518 MET519 THR520 ALA521 THR522 GLN523 LEU524 LEU525 VAL526 PRO527 SER528 ARG529
Unit 6 ARG89 LYS90 TYR91 TRP92 ASP93 VAL94 PRO95 PRO96 PRO97 GLY98
Unit 7 GLN419 PRO420 LEU421 ALA422 THR423 GLN424 CYS425 PHE426 GLN427 LEU428 SER429 ASN430 MET431 PHE432 ASN433 PRO434 GLN435 THR436 GLU437 GLU438 GLU439 VAL440 GLY441 TRP442 ASP443 THR444 GLU445 ILE446 LYS447 ASP448 ASP449 VAL450 ILE451 GLU452 GLU453 CYS454 ASN455 LYS456 HIS457 GLY458 GLY459 VAL460 ILE461 HIS462 ILE463 TYR464 VAL465 ASP466 LYS467 TYR468 SER469 ALA470 GLN471 GLY472 ASN473 VAL474 TYR475 VAL476 LYS477 CYS478 PRO479 SER480 ILE481 ALA482 ALA483 ALA484 ILE485 ALA486 ALA487 VAL488 ASN489 ALA490 LEU491 HIS492 GLY493 ARG494 TRP495 PHE496 ALA497 GLY498 LYS499 MET500 ILE501 THR502 ALA503 ALA504 TYR505 VAL506 PRO507 LEU508 PRO509 THR510 TYR511 HIS512 ASN513 LEU514 PHE515 PRO516 ASP517 SER518 MET519 THR520 ALA521 THR522 GLN523 LEU524 LEU525 VAL526 PRO527 SER528 ARG529 ARG530
Unit 8 VAL88 ARG89 LYS90 TYR91 TRP92 ASP93 VAL94 PRO95 PRO96 PRO97 GLY98
Unit 9 PRO420 LEU421 ALA422 THR423 GLN424 CYS425 PHE426 GLN427 LEU428 SER429 ASN430 MET431 PHE432 ASN433 PRO434 GLN435 THR436 GLU437 GLU438 GLU439 VAL440 GLY441 TRP442 ASP443 THR444 GLU445 ILE446 LYS447 ASP448 ASP449 VAL450 ILE451 GLU452 GLU453 CYS454 ASN455 LYS456 HIS457 GLY458 GLY459 VAL460 ILE461 HIS462 ILE463 TYR464 VAL465 ASP466 LYS467 TYR468 SER469 ALA470 GLN471 GLY472 ASN473 VAL474 TYR475 VAL476 LYS477 CYS478 PRO479 SER480 ILE481 ALA482 ALA483 ALA484 ILE485 ALA486 ALA487 VAL488 ASN489 ALA490 LEU491 HIS492 GLY493 ARG494 TRP495 PHE496 ALA497 GLY498 LYS499 MET500 ILE501 THR502 ALA503 ALA504 TYR505 VAL506 PRO507 LEU508 PRO509 THR510 TYR511 HIS512 ASN513 LEU514 PHE515 PRO516 ASP517 SER518 MET519 THR520 ALA521 THR522 GLN523 LEU524 LEU525 VAL526 PRO527 SER528 ARG529 ARG530
Unit 10 VAL88 ARG89 LYS90 TYR91 TRP92 ASP93 VAL94 PRO95 PRO96 PRO97 GLY98
Unit 11 GLY0 VAL418 GLN419 PRO420 LEU421 ALA422 THR423 GLN424 CYS425 PHE426 GLN427 LEU428 SER429 ASN430 MET431 PHE432 ASN433 PRO434 GLN435 THR436 GLU437 GLU438 GLU439 VAL440 GLY441 TRP442 ASP443 THR444 GLU445 ILE446 LYS447 ASP448 ASP449 VAL450 ILE451 GLU452 GLU453 CYS454 ASN455 LYS456 HIS457 GLY458 GLY459 VAL460 ILE461 HIS462 ILE463 TYR464 VAL465 ASP466 LYS467 TYR468 SER469 ALA470 GLN471 GLY472 ASN473 VAL474 TYR475 VAL476 LYS477 CYS478 PRO479 SER480 ILE481 ALA482 ALA483 ALA484 ILE485 ALA486 ALA487 VAL488 ASN489 ALA490 LEU491 HIS492 GLY493 ARG494 TRP495 PHE496 ALA497 GLY498 LYS499 MET500 ILE501 THR502 ALA503 ALA504 TYR505 VAL506 PRO507 LEU508 PRO509 THR510 TYR511 HIS512 ASN513 LEU514 PHE515 PRO516 ASP517 SER518 MET519 THR520 ALA521 THR522 GLN523 LEU524 LEU525 VAL526 PRO527 SER528 ARG529
Unit 12 VAL88 ARG89 LYS90 TYR91 TRP92 ASP93 VAL94 PRO95 PRO96 PRO97 GLY98
Unit 13 PRO420 LEU421 ALA422 THR423 GLN424 CYS425 PHE426 GLN427 LEU428 SER429 ASN430 MET431 PHE432 ASN433 PRO434 GLN435 THR436 GLU437 GLU438 GLU439 VAL440 GLY441 TRP442 ASP443 THR444 GLU445 ILE446 LYS447 ASP448 ASP449 VAL450 ILE451 GLU452 GLU453 CYS454 ASN455 LYS456 HIS457 GLY458 GLY459 VAL460 ILE461 HIS462 ILE463 TYR464 VAL465 ASP466 LYS467 TYR468 SER469 ALA470 GLN471 GLY472 ASN473 VAL474 TYR475 VAL476 LYS477 CYS478 PRO479 SER480 ILE481 ALA482 ALA483 ALA484 ILE485 ALA486 ALA487 VAL488 ASN489 ALA490 LEU491 HIS492 GLY493 ARG494 TRP495 PHE496 ALA497 GLY498 LYS499 MET500 ILE501 THR502 ALA503 ALA504 TYR505 VAL506 PRO507 LEU508 PRO509 THR510 TYR511 HIS512 ASN513 LEU514 PHE515 PRO516 ASP517 SER518 MET519 THR520 ALA521 THR522 GLN523 LEU524 LEU525 VAL526 PRO527 SER528 ARG529 ARG530
Unit 14 VAL88 ARG89 LYS90 TYR91 TRP92 ASP93 VAL94 PRO95 PRO96 PRO97 GLY98
Unit 15 PRO420 LEU421 ALA422 THR423 GLN424 CYS425 PHE426 GLN427 LEU428 SER429 ASN430 MET431 PHE432 ASN433 PRO434 GLN435 THR436 GLU437 GLU438 GLU439 VAL440 GLY441 TRP442 ASP443 THR444 GLU445 ILE446 LYS447 ASP448 ASP449 VAL450 ILE451 GLU452 GLU453 CYS454 ASN455 LYS456 HIS457 GLY458 GLY459 VAL460 ILE461 HIS462 ILE463 TYR464 VAL465 ASP466 LYS467 TYR468 SER469 ALA470 GLN471 GLY472 ASN473 VAL474 TYR475 VAL476 LYS477 CYS478 PRO479 SER480 ILE481 ALA482 ALA483 ALA484 ILE485 ALA486 ALA487 VAL488 ASN489 ALA490 LEU491 HIS492 GLY493 ARG494 TRP495 PHE496 ALA497 GLY498 LYS499 MET500 ILE501 THR502 ALA503 ALA504 TYR505 VAL506 PRO507 LEU508 PRO509 THR510 TYR511 HIS512 ASN513 LEU514 PHE515 PRO516 ASP517 SER518 MET519 THR520 ALA521 THR522 GLN523 LEU524 LEU525 VAL526 PRO527 SER528 ARG529
Unit 16 VAL88 ARG89 LYS90 TYR91 TRP92 ASP93 VAL94 PRO95 PRO96 PRO97
Unit 17 VAL418 GLN419 PRO420 LEU421 ALA422 THR423 GLN424 CYS425 PHE426 GLN427 LEU428 SER429 ASN430 MET431 PHE432 ASN433 PRO434 GLN435 THR436 GLU437 GLU438 GLU439 VAL440 GLY441 TRP442 ASP443 THR444 GLU445 ILE446 LYS447 ASP448 ASP449 VAL450 ILE451 GLU452 GLU453 CYS454 ASN455 LYS456 HIS457 GLY458 GLY459 VAL460 ILE461 HIS462 ILE463 TYR464 VAL465 ASP466 LYS467 TYR468 SER469 ALA470 GLN471 GLY472 ASN473 VAL474 TYR475 VAL476 LYS477 CYS478 PRO479 SER480 ILE481 ALA482 ALA483 ALA484 ILE485 ALA486 ALA487 VAL488 ASN489 ALA490 LEU491 HIS492 GLY493 ARG494 TRP495 PHE496 ALA497 GLY498 LYS499 MET500 ILE501 THR502 ALA503 ALA504 TYR505 VAL506 PRO507 LEU508 PRO509 THR510 TYR511 HIS512 ASN513 LEU514 PHE515 PRO516 ASP517 SER518 MET519 THR520 ALA521 THR522 GLN523 LEU524 LEU525 VAL526 PRO527 SER528 ARG529
Unit 18 ARG89 LYS90 TYR91 TRP92 ASP93 VAL94 PRO95 PRO96 PRO97 GLY98
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany