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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF YTM1 BOUND TO THE C-TERMINAL DOMAIN OF ERB1 IN SPACE GROUP
Keywords RIBOSOME ASSEMBLY, WD40, BETA-PROPELLER, UBIQUITIN-LIKE DOMA PROTEIN BINDING
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5CXB     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   RIBOSOME BIOGENESIS PROTEIN YTM1  A 465 3501 0
2  Protein   RIBOSOME BIOGENESIS PROTEIN ERB1  B 352 2768 0
3  Ligand   RIBOSOME BIOGENESIS PROTEIN YTM1  A 5 0 19
4  Ligand   RIBOSOME BIOGENESIS PROTEIN ERB1  B 2 0 7
5 Water     326 0 326
total       1150 6269 352
Proteins
Unit 1 VAL12 ALA13 GLN14 VAL15 LYS16 VAL17 ILE18 PHE19 THR20 THR21 THR22 GLU23 PRO24 ASP25 LEU26 GLU27 LEU28 PRO29 GLU30 SER31 LYS32 ARG33 GLN34 LEU35 LEU36 VAL37 PRO38 ALA39 ASP40 ILE41 ARG42 ARG43 TYR44 GLY45 LEU46 SER47 ARG48 ILE49 LEU50 ASN51 SER52 GLU53 SER54 MET55 LEU56 ASP57 THR58 GLY59 SER60 ILE61 PRO62 PHE63 ASP64 PHE65 LEU66 ILE67 ASN68 GLY69 SER70 PHE71 LEU72 ARG73 SER74 SER75 LEU76 GLU77 ASP78 TYR79 LEU80 THR81 SER82 ASN83 GLY84 LEU85 SER86 LEU87 GLU88 THR89 THR90 LEU91 THR92 LEU93 GLN94 TYR95 VAL96 ARG97 SER98 LEU99 ILE100 PRO101 PRO102 VAL103 TYR104 GLU105 ALA106 SER107 PHE108 GLU109 HIS110 ASP111 ASP112 TRP113 VAL114 SER115 ALA116 VAL117 ASP118 VAL119 LEU120 SER121 ALA122 THR123 SER124 PRO125 ALA126 GLY127 ARG128 TRP129 SER130 SER131 ALA132 ALA133 ASN134 SER135 SER136 ALA137 ALA138 VAL139 GLN140 PRO141 GLY142 GLN143 GLU144 ARG145 VAL146 LEU147 SER148 ALA149 SER150 TYR151 ASP152 GLY153 LEU154 LEU155 ARG156 ILE157 TRP158 ASN159 ALA160 SER161 GLY162 SER163 VAL164 ILE165 ALA166 THR167 SER168 PRO169 SER170 GLY171 SER172 HIS173 GLY174 GLY175 HIS176 THR177 ALA178 SER179 ILE180 LYS181 ALA182 ALA183 LYS184 PHE185 LEU186 THR187 SER188 ASP189 ARG190 LEU191 ALA192 SER193 ALA194 GLY195 MET196 ASP197 ARG198 THR199 VAL200 ARG201 VAL202 TRP203 LYS204 TYR205 THR206 GLU207 SER208 ASP209 HIS210 PHE211 THR212 GLY213 GLU214 LEU215 LYS216 PRO217 THR218 LEU219 GLU220 LEU221 TYR222 GLY223 HIS224 THR225 GLY226 SER227 VAL228 ASP229 TRP230 LEU231 ASP232 VAL233 ASP234 GLY235 HIS236 SER237 LYS238 HIS239 ILE240 LEU241 THR242 ALA243 SER244 ALA245 ASP246 GLY247 ALA248 ILE249 GLY250 PHE251 TRP252 SER253 ALA254 SER255 LYS256 ALA257 SER258 ALA259 PRO260 GLU261 PRO262 ASP263 ALA264 SER265 LEU266 LEU267 PRO268 GLY269 ALA270 HIS271 VAL272 SER283 THR284 ALA285 GLN286 ARG287 GLY288 PRO289 LEU290 GLY291 LEU292 TRP293 SER294 ILE295 HIS296 THR297 ALA298 PRO299 ALA300 THR301 ALA302 ALA303 ILE304 PHE305 ASP306 PRO307 ARG308 ASP309 ARG310 THR311 VAL312 ALA313 TYR314 SER315 ALA316 SER317 GLN318 ASP319 HIS320 THR321 VAL322 ARG323 THR324 LEU325 ASP326 LEU327 THR328 THR329 GLY330 GLN331 VAL332 VAL333 SER334 THR335 LEU336 THR337 LEU338 THR339 HIS340 PRO341 LEU342 LEU343 SER344 LEU345 SER346 ALA347 LEU348 THR349 ARG350 ALA351 GLY352 THR353 THR354 SER355 PRO356 LEU357 LEU358 ALA359 ALA360 GLY361 THR362 SER363 ALA364 ARG365 HIS366 ILE367 THR368 MET369 VAL370 ASP371 PRO372 ARG373 ALA374 SER375 SER376 ALA377 THR378 THR379 VAL381 MET382 THR383 LEU384 ARG385 GLY386 HIS387 ALA388 ASN389 LYS390 VAL391 VAL392 SER393 LEU394 SER395 PRO396 SER397 PRO398 GLU399 ASN400 GLU401 TYR402 SER403 LEU404 VAL405 SER406 GLY407 SER408 HIS409 ASP410 GLY411 THR412 CYS413 ARG414 VAL415 TRP416 ASP417 LEU418 ARG419 SER420 VAL421 ARG422 PRO423 ALA424 THR425 LYS426 GLU427 GLU428 GLY429 SER430 LEU431 GLY432 GLY433 VAL434 SER435 GLU436 PRO437 VAL438 TYR439 VAL440 ILE441 GLU442 ARG443 GLU444 SER445 TRP446 ALA447 SER448 LYS449 GLY450 LYS451 LYS452 LYS453 ARG454 PRO455 VAL456 ALA457 GLY458 ASP459 GLY460 CYS461 LYS462 VAL463 PHE464 SER465 VAL466 VAL467 TRP468 ASP469 LYS470 LEU471 GLY472 ILE473 PHE474 SER475 GLY476 GLY477 GLU478 ASP479 LYS480 LYS481 VAL482 GLN483 VAL484 ASN485 ARG486 GLY487
Unit 2 PRO433 SER434 PRO435 ASP436 GLU437 LEU438 LYS439 PRO440 PHE441 PRO442 THR443 VAL444 GLN445 GLN446 THR447 ILE448 PHE449 ARG450 GLY451 HIS452 GLU453 GLY454 ARG455 VAL456 ARG457 SER458 VAL459 ALA460 ILE461 ASP462 PRO463 THR464 GLY465 VAL466 ALA467 LEU468 ALA469 THR470 GLY471 GLY472 ASP473 ASP474 GLY475 THR476 VAL477 ARG478 VAL479 TRP480 GLU481 LEU482 LEU483 THR484 GLY485 ARG486 GLN487 VAL488 TRP489 SER490 VAL491 LYS492 LEU493 ASN494 GLY495 ASP496 GLU497 ALA498 VAL499 ASN500 THR501 VAL502 ARG503 TRP504 ARG505 PRO506 THR507 LYS508 ASP509 THR510 PHE511 ILE512 LEU513 ALA514 ALA515 ALA516 ALA517 GLY518 GLU519 ASP520 ILE521 PHE522 LEU523 MET524 ILE525 PRO526 THR527 HIS528 PRO529 SER530 VAL531 THR532 PRO533 ALA534 LEU535 ASP536 GLN537 ALA538 SER539 ARG540 ASP541 ILE542 LEU543 ASN544 ALA545 GLY546 PHE547 PRO565 PRO566 GLY567 LYS568 TRP569 ALA570 ARG571 PRO572 GLY573 THR574 ARG575 LEU576 GLU577 ASP578 GLU579 GLY580 VAL581 LEU582 LEU583 ARG584 ILE585 THR586 VAL587 ARG588 SER589 THR590 ILE591 LYS592 ALA593 ILE594 SER595 TRP596 HIS597 ARG598 ARG599 GLY600 ASP601 HIS602 PHE603 ALA604 THR605 VAL606 SER607 PRO608 SER609 GLY610 GLN611 ARG612 SER613 SER614 VAL615 ALA616 ILE617 HIS618 THR619 LEU620 SER621 LYS622 HIS623 LEU624 THR625 GLN626 ILE627 PRO628 PHE629 ARG630 LYS631 LEU632 ASN633 GLY634 LEU635 ALA636 GLN637 THR638 ALA639 SER640 PHE641 HIS642 PRO643 LEU644 ARG645 PRO646 LEU647 PHE648 PHE649 VAL650 ALA651 THR652 GLN653 ARG654 SER655 ILE656 ARG657 CYS658 TYR659 ASP660 LEU661 GLN662 LYS663 LEU664 GLU665 LEU666 VAL667 LYS668 ILE669 VAL670 GLN671 PRO672 GLY673 ALA674 LYS675 TRP676 ILE677 SER678 SER679 PHE680 ASP681 VAL682 HIS683 PRO684 GLY685 GLY686 ASP687 ASN688 LEU689 VAL690 VAL691 GLY692 SER693 TYR694 ASP695 LYS696 ARG697 LEU698 LEU699 TRP700 HIS701 ASP702 LEU703 ASP704 LEU705 SER706 ASN707 ARG708 PRO709 TYR710 LYS711 THR712 MET713 ARG714 PHE715 HIS716 THR717 GLU718 ALA719 ILE720 ARG721 ALA722 VAL723 ARG724 PHE725 HIS726 LYS727 GLY728 GLY729 LEU730 PRO731 LEU732 PHE733 ALA734 ASP735 ALA736 SER737 ASP738 ASP739 GLY740 SER741 LEU742 GLN743 ILE744 PHE745 HIS746 GLY747 LYS748 VAL749 PRO750 ASN751 ASP752 GLN753 LEU754 GLU755 ASN756 PRO757 THR758 ILE759 VAL760 PRO761 VAL762 LYS763 MET764 LEU765 LYS766 GLY767 HIS768 LYS769 VAL770 VAL771 ASN772 LYS773 LEU774 GLY775 VAL776 LEU777 ASP778 ILE779 ASP780 TRP781 HIS782 PRO783 ARG784 GLU785 PRO786 TRP787 CYS788 VAL789 SER790 ALA791 GLY792 ALA793 ASP794 GLY795 THR796 ALA797 ARG798 LEU799 TRP800 MET801
Ligands
Unit 3 EDO501 EDO502 EDO503 NA504 GOL505
Unit 4 CL901 GOL902
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany