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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF 9DB1* DEOXYRIBOZYME
Keywords DEOXYRIBOZYME, RNA-LIGASE, CATALYTIC DNA, LIGASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   5CKK     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Other macromolecule   DNA (44-MER)  Y 44 909 0
2  RNA    D 15 323 0
3  Ligand   DNA (44-MER)  Y 2 0 2
4  Ligand   RNA (5'-R(P*GP*CP*AP*CP*UP*AP*GP*AP*UP*CP*GP*GP*A 3')  D 1 0 1
total       62 1232 3

Nucleic acids
Unit 2 G-6 C-5 A-4 C-3 U-2 A-1 G1 A2 U3 C4 G5 G6 A7 U8 G9

Other macromolecules
Unit 1 DA1 DT2 DC3 DC4 DG5 DA6 DT7 DG8 DG9 DA10 DT11 DC12 DA13 DT14 DA15 DC16 DG17 DG18 DT19 DC20 DG21 DG22 DA23 DG24 DG25 DG26 DG27 DT28 DT29 DT30 DG31 DC32 DC33 DG34 DT35 DT36 DT37 DA38 DA39 DG40 DT41 DG42 DC43 DC44

Ligands
Unit 3 MG101 MG102
Unit 4 MG101

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany