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Title | CRYSTAL STRUCTURE OF 9DB1* DEOXYRIBOZYME | |
Keywords | DEOXYRIBOZYME, RNA-LIGASE, CATALYTIC DNA, LIGASE | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 5CKK | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Other macromolecule | DNA (44-MER) | Y | 44 | 909 | 0 |
2 | RNA | D | 15 | 323 | 0 | |
3 | Ligand | DNA (44-MER) | Y | 2 | 0 | 2 |
4 | Ligand | RNA (5'-R(P*GP*CP*AP*CP*UP*AP*GP*AP*UP*CP*GP*GP*A 3') | D | 1 | 0 | 1 |
total | 62 | 1232 | 3 |
Unit 2 | G-6 C-5 A-4 C-3 U-2 A-1 G1 A2 U3 C4 G5 G6 A7 U8 G9 |
Unit 1 | DA1 DT2 DC3 DC4 DG5 DA6 DT7 DG8 DG9 DA10 DT11 DC12 DA13 DT14 DA15 DC16 DG17 DG18 DT19 DC20 DG21 DG22 DA23 DG24 DG25 DG26 DG27 DT28 DT29 DT30 DG31 DC32 DC33 DG34 DT35 DT36 DT37 DA38 DA39 DG40 DT41 DG42 DC43 DC44 |
Unit 3 | MG101 MG102 |
Unit 4 | MG101 |
Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |