5CG9 - Sequence, Chains, Asymmetric and Biological Units

• Title: NGTET1 IN COMPLEX WITH 5MC DNA IN SPACE GROUP P3221
• Keywords: DIOXYGENASE, 5-METHYLCYTOSINE, NGTET1, OXIDOREDUCTASE-DNA CO
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5CG9	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	TET-LIKE DIOXYGENASE	A	267	2121	0
2	Other macromolecule	DNA (5'-D(P*CP*AP*TP*GP*CP*GP*CP*TP*GP*AP*C)-3')	B	11	224	0
3	Other macromolecule		C	13	219	20
4	Protein	TET-LIKE DIOXYGENASE	D	264	2080	0
5	Other macromolecule	DNA (5'-D(P*CP*AP*TP*GP*CP*GP*CP*TP*GP*AP*C)-3')	E	11	224	0
6	Other macromolecule		F	13	246	20
7	Ligand	TET-LIKE DIOXYGENASE	A	3	0	16
8	Ligand	TET-LIKE DIOXYGENASE	D	5	0	25
9	Ligand		F	1	0	4
10	Water			14	0	14
total				602	5114	99

Proteins

Unit 1

HIS 55 MET 56 ILE 57 ASN 58 LYS 59 LYS 60 SER 61 LEU 62 LEU 63 GLN 64 ASN 65 LEU 66 LEU 67 SER 68 LYS 69 CYS 70 LYS 71 THR 72 THR 73 PHE 74 GLN 75 GLN 76 SER 77 PHE 78 THR 79 ASN 80 ALA 81 ASN 82 ILE 83 THR 84 LEU 85 LYS 86 ASP 87 GLU 88 LYS 89 TRP 90 LEU 91 LYS 92 ASN 93 VAL 94 ARG 95 THR 96 ALA 97 TYR 98 PHE 99 VAL 100 CYS 101 ASP 102 HIS 103 ASP 104 GLY 105 SER 106 VAL 107 GLU 108 LEU 109 ALA 110 TYR 111 LEU 112 PRO 113 ASN 114 VAL 115 LEU 116 PRO 117 LYS 118 GLU 119 LEU 120 VAL 121 GLU 122 GLU 123 PHE 124 THR 125 GLU 126 LYS 127 PHE 128 GLU 129 SER 130 ILE 131 GLN 132 THR 133 GLY 134 ARG 135 LYS 136 LYS 137 ASP 138 THR 139 GLY 140 TYR 141 SER 142 GLY 143 ILE 144 LEU 145 ASP 146 ASN 147 SER 148 MET 149 PRO 150 PHE 151 ASN 152 TYR 153 VAL 154 THR 155 ALA 156 ASP 157 LEU 158 SER 159 GLN 160 GLU 161 LEU 162 GLY 163 GLN 164 TYR 165 LEU 166 SER 167 GLU 168 ILE 169 VAL 170 ASN 171 PRO 172 GLN 173 ILE 174 ASN 175 TYR 176 TYR 177 ILE 178 SER 179 LYS 180 LEU 181 LEU 182 THR 183 CYS 184 VAL 185 SER 186 SER 187 ARG 188 THR 189 ILE 190 ASN 191 TYR 192 LEU 193 VAL 194 SER 195 LEU 196 ASN 197 ASP 198 SER 199 TYR 200 TYR 201 ALA 202 LEU 203 ASN 204 ASN 205 CYS 206 LEU 207 TYR 208 PRO 209 SER 210 THR 211 ALA 212 PHE 213 ASN 214 SER 215 LEU 216 LYS 217 PRO 218 SER 219 ASN 220 ASP 221 GLY 222 HIS 223 ARG 224 ILE 225 ARG 226 LYS 227 PRO 228 HIS 229 LYS 230 ASP 231 ASN 232 LEU 233 ASP 234 ILE 235 THR 236 PRO 237 SER 238 SER 239 LEU 240 PHE 241 TYR 242 PHE 243 GLY 244 ASN 245 PHE 246 GLN 247 ASN 248 THR 249 GLU 250 GLY 251 TYR 252 LEU 253 GLU 254 LEU 255 THR 256 ASP 257 LYS 258 ASN 259 CYS 260 LYS 261 VAL 262 PHE 263 VAL 264 GLN 265 PRO 266 GLY 267 ASP 268 VAL 269 LEU 270 PHE 271 PHE 272 LYS 273 GLY 274 ASN 275 GLU 276 TYR 277 LYS 278 HIS 279 VAL 280 VAL 281 ALA 282 ASN 283 ILE 284 THR 285 SER 286 GLY 287 TRP 288 ARG 289 ILE 290 GLY 291 LEU 292 VAL 293 TYR 294 PHE 295 ALA 296 HIS 297 LYS 298 GLY 299 SER 300 LYS 301 THR 302 LYS 303 PRO 304 TYR 305 TYR 306 GLU 307 ASP 308 THR 309 GLN 310 LYS 311 ASN 312 SER 313 LEU 314 LYS 315 ILE 316 HIS 317 LYS 318 GLU 319 THR 320 LYS 321

Unit 4

ILE 57 ASN 58 LYS 59 LYS 60 SER 61 LEU 62 LEU 63 GLN 64 ASN 65 LEU 66 LEU 67 SER 68 LYS 69 CYS 70 LYS 71 THR 72 THR 73 PHE 74 GLN 75 GLN 76 SER 77 PHE 78 THR 79 ASN 80 ALA 81 ASN 82 ILE 83 THR 84 LEU 85 LYS 86 ASP 87 GLU 88 LYS 89 TRP 90 LEU 91 LYS 92 ASN 93 VAL 94 ARG 95 THR 96 ALA 97 TYR 98 PHE 99 VAL 100 CYS 101 ASP 102 HIS 103 ASP 104 GLY 105 SER 106 VAL 107 GLU 108 LEU 109 ALA 110 TYR 111 LEU 112 PRO 113 ASN 114 VAL 115 LEU 116 PRO 117 LYS 118 GLU 119 LEU 120 VAL 121 GLU 122 GLU 123 PHE 124 THR 125 GLU 126 LYS 127 PHE 128 GLU 129 SER 130 ILE 131 GLN 132 THR 133 GLY 134 ARG 135 LYS 136 LYS 137 ASP 138 THR 139 GLY 140 TYR 141 SER 142 GLY 143 ILE 144 LEU 145 ASP 146 ASN 147 SER 148 MET 149 PRO 150 PHE 151 ASN 152 TYR 153 VAL 154 THR 155 ALA 156 ASP 157 LEU 158 SER 159 GLN 160 GLU 161 LEU 162 GLY 163 GLN 164 TYR 165 LEU 166 SER 167 GLU 168 ILE 169 VAL 170 ASN 171 PRO 172 GLN 173 ILE 174 ASN 175 TYR 176 TYR 177 ILE 178 SER 179 LYS 180 LEU 181 LEU 182 THR 183 CYS 184 VAL 185 SER 186 SER 187 ARG 188 THR 189 ILE 190 ASN 191 TYR 192 LEU 193 VAL 194 SER 195 LEU 196 ASN 197 ASP 198 SER 199 TYR 200 TYR 201 ALA 202 LEU 203 ASN 204 ASN 205 CYS 206 LEU 207 TYR 208 PRO 209 SER 210 THR 211 ALA 212 PHE 213 ASN 214 SER 215 LEU 216 LYS 217 PRO 218 SER 219 ASN 220 ASP 221 GLY 222 HIS 223 ARG 224 ILE 225 ARG 226 LYS 227 PRO 228 HIS 229 LYS 230 ASP 231 ASN 232 LEU 233 ASP 234 ILE 235 THR 236 PRO 237 SER 238 SER 239 LEU 240 PHE 241 TYR 242 PHE 243 GLY 244 ASN 245 PHE 246 GLN 247 ASN 248 THR 249 GLU 250 GLY 251 TYR 252 LEU 253 GLU 254 LEU 255 THR 256 ASP 257 LYS 258 ASN 259 CYS 260 LYS 261 VAL 262 PHE 263 VAL 264 GLN 265 PRO 266 GLY 267 ASP 268 VAL 269 LEU 270 PHE 271 PHE 272 LYS 273 GLY 274 ASN 275 GLU 276 TYR 277 LYS 278 HIS 279 VAL 280 VAL 281 ALA 282 ASN 283 ILE 284 THR 285 SER 286 GLY 287 TRP 288 ARG 289 ILE 290 GLY 291 LEU 292 VAL 293 TYR 294 PHE 295 ALA 296 HIS 297 LYS 298 GLY 299 SER 300 LYS 301 THR 302 LYS 303 PRO 304 TYR 305 TYR 306 GLU 307 ASP 308 THR 309 GLN 310 LYS 311 ASN 312 SER 313 LEU 314 LYS 315 ILE 316 HIS 317 LYS 318 GLU 319 THR 320

Other macromolecules

Unit 2	DC 3 DA 4 DT 5 DG 6 DC 7 DG 8 DC 9 DT 10 DG 11 DA 12 DC 13
Unit 3	DT 14 DG 15 DT 16 DC 17 DA 18 DG 19 5CM 20 DG 21 DC 22 DA 23 DT 24 DG 25 DG 26
Unit 5	DC 3 DA 4 DT 5 DG 6 DC 7 DG 8 DC 9 DT 10 DG 11 DA 12 DC 13
Unit 6	DT 14 DG 15 DT 16 DC 17 DA 18 DG 19 5CM 20 DG 21 DC 22 DA 23 DT 24 DG 25 DG 26

Ligands

Unit 7	SO4 401 AKG 402 MN 403
Unit 8	SO4 401 SO4 402 EDO 403 AKG 404 MN 405
Unit 9	EDO 101