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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF FAB 9H+3L, A PUTATIVE PRECURSOR OF THE FAMILY OF POTENT HIV-1 ANTIBODIES
Keywords HIV-1, ANTIBODY, IMMUNE SYSTEM
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   5CEY     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ANTIBODY 9H+3L FAB LIGHT CHAIN  A 211 1602 0
2  Protein   ANTIBODY 9H+3L FAB HEAVY CHAIN  B 232 1760 0
3  Protein   ANTIBODY 9H+3L FAB LIGHT CHAIN  C 207 1575 0
4  Protein   ANTIBODY 9H+3L FAB HEAVY CHAIN  D 225 1713 0
5  Ligand   ANTIBODY 9H+3L FAB LIGHT CHAIN  A 1 0 6
6  Ligand   ANTIBODY 9H+3L FAB HEAVY CHAIN  B 1 0 19
7  Ligand   ANTIBODY 9H+3L FAB LIGHT CHAIN  C 1 0 6
8  Ligand   ANTIBODY 9H+3L FAB HEAVY CHAIN  D 1 0 22
9 Water     102 0 102
total       981 6650 155

Proteins
Unit 1 SER6 TYR7 VAL8 ARG9 PRO10 LEU11 SER12 VAL13 ALA14 LEU15 GLY16 GLU17 THR18 ALA19 SER20 ILE21 SER22 CYS23 GLY24 ARG25 GLN26 ALA27 LEU28 GLY29 SER30 ARG31 ALA32 VAL33 GLN34 TRP35 TYR36 GLN37 HIS38 ARG39 PRO40 GLY41 GLN42 ALA43 PRO44 ILE45 LEU46 LEU47 ILE48 TYR49 ASN50 ASN51 GLN52 ASP53 ARG54 PRO55 SER56 GLY57 ILE58 PRO59 GLU60 ARG61 PHE62 SER63 GLY64 THR65 PRO66 ASP67 ILE67A ASN67B PHE67C GLY68 THR69 ARG70 ALA71 THR72 LEU73 THR74 ILE75 SER76 GLY77 VAL78 GLU79 ALA80 GLY81 ASP82 GLU83 ALA84 ASP85 TYR86 TYR87 CYS88 HIS89 MET90 TRP91 ASP92 SER93 ARG94 SER95 GLY95A PHE95B SER95C TRP96 SER97 PHE98 GLY99 GLY100 ALA101 THR102 ARG103 LEU104 THR105 VAL106 LEU107 GLY108 GLN109 PRO110 LYS111 ALA112 ALA113 PRO114 SER115 VAL116 THR117 LEU118 PHE119 PRO120 PRO121 SER122 SER123 GLU124 GLU125 LEU126 GLN127 ALA128 ASN129 LYS130 ALA131 THR132 LEU133 VAL134 CYS135 LEU136 ILE137 SER138 ASP139 PHE140 TYR141 PRO142 GLY143 ALA144 VAL145 THR146 VAL147 ALA148 TRP149 LYS150 ALA151 ASP152 SER153 SER154 PRO155 VAL156 LYS157 ALA158 GLY159 VAL160 GLU161 THR162 THR163 THR164 PRO165 SER166 LYS167 GLN168 SER169 ASN170 ASN171 LYS172 TYR173 ALA174 ALA175 SER176 SER177 TYR178 LEU179 SER180 LEU181 THR182 PRO183 GLU184 GLN185 TRP186 LYS187 SER188 HIS189 LYS190 SER191 TYR192 SER193 CYS194 GLN195 VAL196 THR197 HIS198 GLU199 GLY200 SER201 THR202 VAL203 GLU204 LYS205 THR206 VAL207 ALA208 PRO209 THR210
Unit 2 GLN1 VAL2 GLN3 LEU4 GLN5 GLU6 SER7 GLY8 PRO9 GLY10 LEU11 VAL12 LYS13 PRO14 SER15 GLU16 THR17 LEU18 SER19 VAL20 THR21 CYS22 ILE23 VAL24 SER25 GLY26 GLY27 SER28 ILE29 SER30 ASN31 TYR32 TYR33 TRP34 THR35 TRP36 ILE37 ARG38 GLN39 SER40 PRO41 GLY42 LYS43 GLY44 LEU45 GLU46 TRP47 ILE48 GLY49 TYR50 ILE51 SER52 ASP53 ARG54 GLU55 THR56 THR57 THR58 TYR59 ASN60 PRO61 SER62 LEU63 LYS64 SER65 ARG66 VAL67 VAL68 ILE69 SER70 ARG71 ASP72 THR73 SER74 LYS75 ASN76 GLN77 LEU78 SER79 LEU80 LYS81 LEU82 ASN82A SER82B VAL82C THR83 ALA84 ALA85 ASP86 THR87 ALA88 ILE89 TYR90 TYR91 CYS92 ALA93 THR94 ALA95 ARG96 ARG97 GLY98 GLN99 ARG100 ILE100A TYR100B GLY100C VAL100D VAL100E SER100F PHE100G GLY100H GLU100I PHE100J PHE100K TYR100L TYR100M TYR100N TYR100O MET100P ASP100Q VAL100R TRP101 GLY102 LYS103 GLY104 THR105 ALA106 VAL107 THR108 VAL109 SER110 SER111 ALA112 SER113 THR114 LYS115 GLY116 PRO117 SER118 VAL119 PHE120 PRO121 LEU122 ALA123 PRO124 SER125 SER126 LYS127 SER128 THR129 SER130 GLY131 GLY132 THR133 ALA134 ALA135 LEU136 GLY137 CYS138 LEU139 VAL140 LYS141 ASP142 TYR143 PHE144 PRO145 GLU146 PRO147 VAL148 THR149 VAL150 SER151 TRP152 ASN153 SER154 GLY155 ALA156 LEU157 THR158 SER159 GLY160 VAL161 HIS162 THR163 PHE164 PRO165 ALA166 VAL167 LEU168 GLN169 SER170 SER171 GLY172 LEU173 TYR174 SER175 LEU176 SER177 SER178 VAL179 VAL180 THR181 VAL182 PRO183 SER184 SER185 SER186 LEU187 GLY188 THR189 GLN190 THR191 TYR192 ILE193 CYS194 ASN195 VAL196 ASN197 HIS198 LYS199 PRO200 SER201 ASN202 THR203 LYS204 VAL205 ASP206 LYS207 LYS208 VAL209 GLU210 PRO211
Unit 3 TYR7 VAL8 ARG9 PRO10 LEU11 SER12 VAL13 ALA14 LEU15 GLY16 GLU17 THR18 ALA19 SER20 ILE21 SER22 CYS23 GLY24 ARG25 GLN26 ALA27 LEU28 GLY29 SER30 ARG31 ALA32 VAL33 GLN34 TRP35 TYR36 GLN37 HIS38 ARG39 PRO40 GLY41 GLN42 ALA43 PRO44 ILE45 LEU46 LEU47 ILE48 TYR49 ASN50 ASN51 GLN52 ASP53 ARG54 PRO55 SER56 GLY57 ILE58 PRO59 GLU60 ARG61 PHE62 SER63 GLY64 THR65 PRO66 ASP67 ILE67A ASN67B ARG70 ALA71 THR72 LEU73 THR74 ILE75 SER76 GLY77 VAL78 GLU79 ALA80 GLY81 ASP82 GLU83 ALA84 ASP85 TYR86 TYR87 CYS88 HIS89 MET90 TRP91 ASP92 SER93 ARG94 SER95 GLY95A PHE95B SER95C TRP96 SER97 PHE98 GLY99 GLY100 ALA101 THR102 ARG103 LEU104 THR105 VAL106 LEU107 GLY108 GLN109 PRO110 LYS111 ALA112 ALA113 PRO114 SER115 VAL116 THR117 LEU118 PHE119 PRO120 PRO121 SER122 SER123 GLU124 GLU125 LEU126 GLN127 ALA128 ASN129 LYS130 ALA131 THR132 LEU133 VAL134 CYS135 LEU136 ILE137 SER138 ASP139 PHE140 TYR141 PRO142 GLY143 ALA144 VAL145 THR146 VAL147 ALA148 TRP149 LYS150 ALA151 ASP152 SER153 SER154 PRO155 VAL156 LYS157 ALA158 GLY159 VAL160 GLU161 THR162 THR163 THR164 PRO165 SER166 LYS167 GLN168 SER169 ASN170 ASN171 LYS172 TYR173 ALA174 ALA175 SER176 SER177 TYR178 LEU179 SER180 LEU181 THR182 PRO183 GLU184 GLN185 TRP186 LYS187 SER188 HIS189 LYS190 SER191 TYR192 SER193 CYS194 GLN195 VAL196 THR197 HIS198 GLU199 GLY200 SER201 THR202 VAL203 GLU204 LYS205 THR206 VAL207 ALA208 PRO209 THR210
Unit 4 VAL2 GLN3 LEU4 GLN5 GLU6 SER7 GLY8 PRO9 GLY10 LEU11 VAL12 LYS13 PRO14 SER15 GLU16 THR17 LEU18 SER19 VAL20 THR21 CYS22 ILE23 VAL24 SER25 GLY26 GLY27 SER28 ILE29 SER30 ASN31 TYR32 TYR33 TRP34 THR35 TRP36 ILE37 ARG38 GLN39 SER40 PRO41 GLY42 LYS43 GLY44 LEU45 GLU46 TRP47 ILE48 GLY49 TYR50 ILE51 SER52 ASP53 ARG54 GLU55 THR56 THR57 THR58 TYR59 ASN60 PRO61 SER62 LEU63 LYS64 SER65 ARG66 VAL67 VAL68 ILE69 SER70 ARG71 ASP72 THR73 SER74 LYS75 ASN76 GLN77 LEU78 SER79 LEU80 LYS81 LEU82 ASN82A SER82B VAL82C THR83 ALA84 ALA85 ASP86 THR87 ALA88 ILE89 TYR90 TYR91 CYS92 ALA93 THR94 ALA95 ARG96 ARG97 GLY98 GLN99 ARG100 ILE100A TYR100B GLY100C VAL100D VAL100E SER100F PHE100G GLY100H GLU100I PHE100J PHE100K TYR100L TYR100M TYR100N TYR100O MET100P ASP100Q VAL100R TRP101 GLY102 LYS103 GLY104 THR105 ALA106 VAL107 THR108 VAL109 SER110 SER111 ALA112 SER113 THR114 LYS115 GLY116 PRO117 SER118 VAL119 PHE120 PRO121 LEU122 ALA123 PRO124 SER125 GLY132 THR133 ALA134 ALA135 LEU136 GLY137 CYS138 LEU139 VAL140 LYS141 ASP142 TYR143 PHE144 PRO145 GLU146 PRO147 VAL148 THR149 VAL150 SER151 TRP152 ASN153 SER154 GLY155 ALA156 LEU157 THR158 SER159 GLY160 VAL161 HIS162 THR163 PHE164 PRO165 ALA166 VAL167 LEU168 GLN169 SER170 SER171 GLY172 LEU173 TYR174 SER175 LEU176 SER177 SER178 VAL179 VAL180 THR181 VAL182 PRO183 SER184 SER185 SER186 LEU187 GLY188 THR189 GLN190 THR191 TYR192 ILE193 CYS194 ASN195 VAL196 ASN197 HIS198 LYS199 PRO200 SER201 ASN202 THR203 LYS204 VAL205 ASP206 LYS207 LYS208 VAL209 GLU210 PRO211

Ligands
Unit 5 GOL301
Unit 6 P6G301
Unit 7 GOL301
Unit 8 PE7301

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany