5CCB - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF HUMAN M1A58 METHYLTRANSFERASE IN A COMP TRNA3LYS AND SAH
• Keywords: TRNA A58 MODIFICATION, METHYL TRANSFERASE-TRNA COMPLEX, CLAS METHYLTRANSFERASE FOLD, S-ADENOSYL-L-METHIONINE COFACTOR, TRANSFERASE-RNA COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5CCB	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	TRNA (ADENINE(58)-N(1))-METHYLTRANSFERASE CATALYT TRMT61A	A	282	4305	0
2	Protein	TRNA (ADENINE(58)-N(1))-METHYLTRANSFERASE NON-CAT SUBUNIT TRM6	B	371	5882	0
3	RNA		N	77	2472	0
4	Ligand	TRNA (ADENINE(58)-N(1))-METHYLTRANSFERASE CATALYT TRMT61A	A	1	0	45
5	Ligand	TRNA3LYS	N	1	0	1
6	Water			416	0	416
total				1148	12659	462

Proteins

Unit 1

MET 1 SER 2 PHE 3 VAL 4 ALA 5 TYR 6 GLU 7 GLU 8 LEU 9 ILE 10 LYS 11 GLU 12 GLY 13 ASP 14 THR 15 ALA 16 ILE 17 LEU 18 SER 19 LEU 20 GLY 21 HIS 22 GLY 23 ALA 24 MET 25 VAL 26 ALA 27 VAL 28 ARG 29 VAL 30 GLN 31 ARG 32 GLY 33 ALA 34 GLN 35 THR 36 GLN 37 THR 38 ARG 39 HIS 40 GLY 41 VAL 42 LEU 43 ARG 44 HIS 45 SER 46 VAL 47 ASP 48 LEU 49 ILE 50 GLY 51 ARG 52 PRO 53 PHE 54 GLY 55 SER 56 LYS 57 VAL 58 THR 59 CYS 60 GLY 61 ARG 62 GLY 63 GLY 64 TRP 65 VAL 66 TYR 67 VAL 68 LEU 69 HIS 70 PRO 71 THR 72 PRO 73 GLU 74 LEU 75 TRP 76 THR 77 LEU 78 ASN 79 LEU 80 PRO 81 HIS 82 ARG 83 THR 84 GLN 85 ILE 86 LEU 87 TYR 88 SER 89 THR 90 ASP 91 ILE 92 ALA 93 LEU 94 ILE 95 THR 96 MET 97 MET 98 LEU 99 GLU 100 LEU 101 ARG 102 PRO 103 GLY 104 SER 105 VAL 106 VAL 107 CYS 108 GLU 109 SER 110 GLY 111 THR 112 GLY 113 SER 114 GLY 115 SER 116 VAL 117 SER 118 HIS 119 ALA 120 ILE 121 ILE 122 ARG 123 THR 124 ILE 125 ALA 126 PRO 127 THR 128 GLY 129 HIS 130 LEU 131 HIS 132 THR 133 VAL 134 GLU 135 PHE 136 HIS 137 GLN 138 GLN 139 ARG 140 ALA 141 GLU 142 LYS 143 ALA 144 ARG 145 GLU 146 GLU 147 PHE 148 GLN 149 GLU 150 HIS 151 ARG 152 VAL 153 GLY 154 ARG 155 TRP 156 VAL 157 THR 158 VAL 159 ARG 160 THR 161 GLN 162 ASP 163 VAL 164 CYS 165 ARG 166 SER 167 GLY 168 PHE 169 GLY 170 VAL 171 SER 172 HIS 173 VAL 174 ALA 175 ASP 176 ALA 177 VAL 178 PHE 179 LEU 180 ASP 181 ILE 182 PRO 183 SER 184 PRO 185 TRP 186 GLU 187 ALA 188 VAL 189 GLY 190 HIS 191 ALA 192 TRP 193 ASP 194 ALA 195 LEU 196 LYS 197 VAL 198 GLU 199 GLY 200 GLY 201 ARG 202 PHE 203 CYS 204 SER 205 PHE 206 SER 207 PRO 208 CYS 209 ILE 210 GLU 211 GLN 212 VAL 213 GLN 214 ARG 215 THR 216 CYS 217 GLN 218 ALA 219 LEU 220 ALA 221 ALA 222 ARG 223 GLY 224 PHE 225 SER 226 GLU 227 LEU 228 SER 229 THR 230 LEU 231 GLU 232 VAL 233 LEU 234 PRO 235 GLN 236 VAL 237 TYR 238 ASN 239 VAL 240 ARG 241 THR 242 VAL 243 SER 244 LEU 245 PRO 246 PRO 247 PRO 248 ASP 249 LEU 250 GLY 251 THR 252 GLY 253 ASP 261 THR 262 SER 263 PRO 264 PHE 265 ARG 266 SER 267 GLY 268 THR 269 PRO 270 MET 271 LYS 272 GLU 273 ALA 274 VAL 275 GLY 276 HIS 277 THR 278 GLY 279 TYR 280 LEU 281 THR 282 PHE 283 ALA 284 THR 285 LYS 286 THR 287 PRO 288 GLY 289

Unit 2

HIS 18 ARG 19 ILE 20 ARG 21 ASP 22 GLY 23 ASP 24 PHE 25 VAL 26 VAL 27 LEU 28 LYS 29 ARG 30 GLU 31 ASP 32 VAL 33 PHE 34 LYS 35 ALA 36 VAL 37 GLN 38 VAL 39 GLN 40 ARG 41 ARG 42 LYS 43 LYS 44 VAL 45 THR 46 PHE 47 GLU 48 LYS 49 GLN 50 TRP 51 PHE 52 TYR 53 LEU 54 ASP 55 ASN 56 VAL 57 ILE 58 GLY 59 HIS 60 SER 61 TYR 62 GLY 63 THR 64 ALA 65 PHE 66 GLU 67 VAL 68 THR 69 SER 70 GLY 71 GLY 72 SER 73 LEU 74 GLN 75 PRO 76 LYS 77 LYS 78 LYS 79 ARG 80 LYS 88 GLU 89 ALA 90 GLY 91 THR 92 ASP 93 ASN 94 ARG 95 ASN 96 ILE 97 VAL 98 ASP 99 ASP 100 GLY 101 LYS 102 SER 103 GLN 104 LYS 105 LEU 106 THR 107 GLN 108 ASP 109 ASP 110 ILE 111 LYS 112 ALA 113 LEU 114 LYS 115 ASP 116 LYS 117 GLY 118 ILE 119 LYS 120 GLY 121 GLU 122 GLU 123 ILE 124 VAL 125 GLN 126 GLN 127 LEU 128 ILE 129 GLU 130 ASN 131 SER 132 THR 133 THR 134 PHE 135 ARG 136 ASP 137 LYS 138 THR 139 GLU 140 PHE 141 ALA 142 GLN 143 ASP 144 LYS 145 TYR 146 ILE 147 LYS 148 LYS 149 LYS 150 LYS 151 LYS 152 LYS 153 TYR 154 GLU 155 ALA 156 ILE 157 ILE 158 THR 159 VAL 160 VAL 161 LYS 162 PRO 163 SER 164 THR 165 ARG 166 ILE 167 LEU 168 SER 169 ILE 170 MET 171 TYR 172 TYR 173 ALA 174 ARG 175 GLU 176 PRO 177 GLY 178 LYS 179 ILE 180 ASN 181 HIS 182 MET 183 ARG 184 TYR 185 ASP 186 THR 187 LEU 188 ALA 189 GLN 190 MET 191 LEU 192 THR 193 LEU 194 GLY 195 ASN 196 ILE 197 ARG 198 ALA 199 GLY 200 ASN 201 LYS 202 MET 203 ILE 204 VAL 205 MET 206 GLU 207 THR 208 CYS 209 ALA 210 GLY 211 LEU 212 VAL 213 LEU 214 GLY 215 ALA 216 MET 217 MET 218 GLU 219 ARG 220 MET 221 GLY 222 GLY 223 PHE 224 GLY 225 SER 226 ILE 227 ILE 228 GLN 229 LEU 230 TYR 231 PRO 232 GLY 233 GLY 234 GLY 235 PRO 236 VAL 237 ARG 238 ALA 239 ALA 240 THR 241 ALA 242 CYS 243 PHE 244 GLY 245 PHE 246 PRO 247 LYS 248 SER 249 PHE 250 LEU 251 SER 252 GLY 253 LEU 254 TYR 255 GLU 256 PHE 257 PRO 258 LEU 259 ASN 260 LYS 261 VAL 262 ASP 263 SER 264 LEU 265 LEU 266 HIS 267 GLY 268 THR 269 PHE 270 SER 271 LYS 340 ASP 341 TYR 342 ILE 343 GLN 344 GLU 345 LYS 346 GLN 347 ARG 348 ARG 349 GLN 350 GLU 351 GLU 352 GLN 353 ARG 354 LYS 355 ARG 356 HIS 357 LEU 358 GLU 359 ALA 360 ALA 361 ALA 362 LEU 363 LEU 364 SER 365 GLU 366 ARG 367 ASN 368 ALA 369 ASP 370 GLY 371 LEU 372 ILE 373 VAL 374 ALA 375 SER 376 ARG 377 PHE 378 HIS 379 PRO 380 THR 381 PRO 382 LEU 383 LEU 384 LEU 385 SER 386 LEU 387 LEU 388 ASP 389 PHE 390 VAL 391 ALA 392 PRO 393 SER 394 ARG 395 PRO 396 PHE 397 VAL 398 VAL 399 TYR 400 CYS 401 GLN 402 TYR 403 LYS 404 GLU 405 PRO 406 LEU 407 LEU 408 GLU 409 CYS 410 TYR 411 THR 412 LYS 413 LEU 414 ARG 415 GLU 416 ARG 417 GLY 418 GLY 419 VAL 420 ILE 421 ASN 422 LEU 423 ARG 424 LEU 425 SER 426 GLU 427 THR 428 TRP 429 LEU 430 ARG 431 ASN 432 TYR 433 GLN 434 VAL 435 LEU 436 PRO 437 ASP 438 ARG 439 SER 440 HIS 441 PRO 442 LYS 443 LEU 444 LEU 445 MET 446 SER 447 GLY 448 GLY 449 GLY 450 GLY 451 TYR 452 LEU 453 LEU 454 SER 455 GLY 456 PHE 457 THR 458 VAL 459 ALA 460 MET 461 ASP 462 ASN 463

Nucleic acids

Unit 3

G 0 G 1 C 2 C 3 C 4 G 5 G 6 A 7 U 8 A 9 G 10 C 11 U 12 C 13 A 14 G 15 U 16 C 17 G 18 G 19 U 20 A 21 G 22 A 23 G 24 C 25 A 26 U 27 C 28 A 29 G 30 A 31 C 32 U 33 U 34 U 35 U 36 A 37 A 38 U 39 C 40 U 41 G 42 A 43 G 44 G 45 G 46 U 47 C 48 C 49 A 50 G 51 G 52 G 53 U 54 U 55 C 56 A 57 A 58 G 59 U 60 C 61 C 62 C 63 U 64 G 65 U 66 U 67 C 68 G 69 G 70 G 71 C 72 G 73 C 74 C 75 A 76

Ligands

Unit 4	SAH 301
Unit 5	NA 101