5C9A - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF EMPTY COXSACKIEVIRUS A16 PARTICLE
• Keywords: HAND-FOOT-AND-MOUTH DISEASE, IMMUNOGENICITY, PICORNAVIRUS, ICOSAHEDRAL VIRUS, VIRUS
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5C9A	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	VP1	A	282	2216	0
2	Protein	VP0	B	295	2266	0
3	Protein	VP3	C	242	1876	0
4	Ligand	VP1	A	4	0	24
5	Ligand	VP0	B	4	0	4
6	Ligand	VP3	C	1	0	1
7	Water			57	0	57
total				885	6358	86

Proteins

Unit 1	ASP 2 PRO 3 ILE 4 ALA 5 ASP 6 MET 7 ILE 8 SER 19 LEU 20 THR 21 ALA 22 LEU 23 GLN 24 VAL 25 LEU 26 PRO 27 THR 28 ALA 29 ALA 30 ASN 31 THR 32 GLU 33 ALA 34 SER 35 SER 36 HIS 37 ARG 38 VAL 43 VAL 44 PRO 45 ALA 46 LEU 47 GLN 48 ALA 49 ALA 50 GLU 51 THR 52 GLY 53 ALA 54 SER 55 SER 56 ASN 57 ALA 58 SER 59 ASP 60 LYS 61 ASN 62 LEU 63 ILE 64 GLU 65 THR 66 ARG 67 CYS 68 VAL 69 LEU 70 ASN 71 HIS 72 HIS 73 SER 74 THR 75 GLN 76 GLU 77 THR 78 ALA 79 ILE 80 GLY 81 ASN 82 PHE 83 PHE 84 SER 85 ARG 86 ALA 87 GLY 88 LEU 89 VAL 90 SER 91 ILE 92 ILE 93 THR 94 MET 95 PRO 96 THR 97 THR 98 GLY 99 THR 100 GLN 101 ASN 102 THR 103 ASP 104 GLY 105 TYR 106 VAL 107 ASN 108 TRP 109 ASP 110 ILE 111 ASP 112 LEU 113 MET 114 GLY 115 TYR 116 ALA 117 GLN 118 LEU 119 ARG 120 ARG 121 LYS 122 CYS 123 GLU 124 LEU 125 PHE 126 THR 127 TYR 128 MET 129 ARG 130 PHE 131 ASP 132 ALA 133 GLU 134 PHE 135 THR 136 PHE 137 VAL 138 VAL 139 ALA 140 LYS 141 PRO 142 ASN 143 GLY 144 GLU 145 LEU 146 VAL 147 PRO 148 GLN 149 LEU 150 LEU 151 GLN 152 TYR 153 MET 154 TYR 155 VAL 156 PRO 157 PRO 158 GLY 159 ALA 160 PRO 161 LYS 162 PRO 163 THR 164 SER 165 ARG 166 ASP 167 SER 168 PHE 169 ALA 170 TRP 171 GLN 172 THR 173 ALA 174 THR 175 ASN 176 PRO 177 SER 178 VAL 179 PHE 180 VAL 181 LYS 182 MET 183 THR 184 ASP 185 PRO 186 PRO 187 ALA 188 GLN 189 VAL 190 SER 191 VAL 192 PRO 193 PHE 194 MET 195 SER 196 PRO 197 ALA 198 SER 199 ALA 200 TYR 201 GLN 202 TRP 203 PHE 204 TYR 205 ASP 206 GLY 207 TYR 208 PRO 209 THR 210 PHE 211 GLY 212 GLU 213 HIS 214 LEU 215 GLN 216 ALA 217 ASN 218 ASP 219 LEU 220 ASP 221 TYR 222 GLY 223 GLN 224 CYS 225 PRO 226 ASN 227 ASN 228 MET 229 MET 230 GLY 231 THR 232 PHE 233 SER 234 ILE 235 ARG 236 THR 237 VAL 238 GLY 239 ILE 240 GLU 241 LYS 242 SER 243 PRO 244 HIS 245 SER 246 ILE 247 THR 248 LEU 249 ARG 250 VAL 251 TYR 252 MET 253 ARG 254 ILE 255 LYS 256 HIS 257 VAL 258 ARG 259 ALA 260 TRP 261 ILE 262 PRO 263 ARG 264 PRO 265 LEU 266 ARG 267 ASN 268 GLN 269 PRO 270 TYR 271 LEU 272 PHE 273 LYS 274 THR 275 ASN 276 PRO 277 ASN 278 TYR 279 LYS 280 GLY 281 ASN 282 ASP 283 ILE 284 LYS 285 CYS 286 THR 287 SER 288 THR 289 SER 290 ARG 291 ASP 292 LYS 293 ILE 294 THR 295 THR 296 LEU 297
Unit 2	GLY 11 SER 12 HIS 13 GLU 14 ASN 15 SER 16 ASN 17 SER 18 ALA 19 SER 20 GLU 21 GLY 22 SER 23 THR 24 ILE 25 ASN 26 TYR 27 THR 28 THR 29 ILE 30 ASN 31 TYR 32 TYR 33 LYS 34 ASP 35 ALA 36 TYR 37 ALA 38 ALA 39 SER 40 ALA 41 GLY 42 ARG 43 GLN 44 ASP 45 MET 46 SER 47 GLN 48 ASP 49 PRO 50 LYS 51 LYS 52 PHE 53 THR 54 ASP 55 PRO 56 VAL 57 MET 58 ASP 59 VAL 60 SER 79 ASP 80 ARG 81 VAL 82 ALA 83 GLN 84 LEU 85 THR 86 ILE 87 GLY 88 ASN 89 SER 90 THR 91 ILE 92 THR 93 THR 94 GLN 95 GLU 96 ALA 97 ALA 98 ASN 99 ILE 100 VAL 101 ILE 102 ALA 103 TYR 104 GLY 105 GLU 106 TRP 107 PRO 108 GLU 109 TYR 110 CYS 111 PRO 112 ASP 113 THR 114 ASP 115 ALA 116 THR 117 ALA 118 VAL 119 ASP 120 LYS 121 PRO 122 THR 123 ARG 124 PRO 125 ASP 126 VAL 127 SER 128 VAL 129 ASN 130 ARG 131 PHE 132 PHE 133 THR 134 LEU 135 ASP 136 THR 137 LYS 138 SER 139 TRP 140 ALA 141 LYS 142 ASP 143 SER 144 LYS 145 GLY 146 TRP 147 TYR 148 TRP 149 LYS 150 PHE 151 PRO 152 ASP 153 VAL 154 LEU 155 THR 156 GLU 157 VAL 158 GLY 159 VAL 160 PHE 161 GLY 162 GLN 163 ASN 164 ALA 165 GLN 166 PHE 167 HIS 168 TYR 169 LEU 170 TYR 171 ARG 172 SER 173 GLY 174 PHE 175 CYS 176 VAL 177 HIS 178 VAL 179 GLN 180 CYS 181 ASN 182 ALA 183 SER 184 LYS 185 PHE 186 HIS 187 GLN 188 GLY 189 ALA 190 LEU 191 LEU 192 VAL 193 ALA 194 VAL 195 LEU 196 PRO 197 GLU 198 TYR 199 VAL 200 LEU 201 GLY 202 THR 203 ILE 204 ALA 205 GLY 206 GLY 207 THR 208 GLY 209 ASN 210 GLU 211 ASN 212 SER 213 HIS 214 PRO 215 PRO 216 TYR 217 ALA 218 THR 219 THR 220 GLN 221 PRO 222 GLY 223 GLN 224 VAL 225 GLY 226 ALA 227 VAL 228 LEU 229 THR 230 HIS 231 PRO 232 TYR 233 VAL 234 LEU 235 ASP 236 ALA 237 GLY 238 ILE 239 PRO 240 LEU 241 SER 242 GLN 243 LEU 244 THR 245 VAL 246 CYS 247 PRO 248 HIS 249 GLN 250 TRP 251 ILE 252 ASN 253 LEU 254 ARG 255 THR 256 ASN 257 ASN 258 CYS 259 ALA 260 THR 261 ILE 262 ILE 263 VAL 264 PRO 265 TYR 266 MET 267 ASN 268 THR 269 VAL 270 PRO 271 PHE 272 ASP 273 SER 274 ALA 275 LEU 276 ASN 277 HIS 278 CYS 279 ASN 280 PHE 281 GLY 282 LEU 283 LEU 284 VAL 285 ILE 286 PRO 287 VAL 288 VAL 289 PRO 290 LEU 291 ASP 292 PHE 293 ASN 294 THR 295 GLY 296 ALA 297 THR 298 SER 299 GLU 300 ILE 301 PRO 302 ILE 303 THR 304 VAL 305 THR 306 ILE 307 ALA 308 PRO 309 MET 310 CYS 311 ALA 312 GLU 313 PHE 314 ALA 315 GLY 316 LEU 317 ARG 318 GLN 319 ALA 320 VAL 321 LYS 322 GLN 323
Unit 3	GLY 1 ILE 2 PRO 3 THR 4 GLU 5 LEU 6 LYS 7 PRO 8 GLY 9 THR 10 ASN 11 GLN 12 PHE 13 LEU 14 THR 15 THR 16 ASP 17 ASP 18 GLY 19 VAL 20 SER 21 ALA 22 PRO 23 ILE 24 LEU 25 PRO 26 GLY 27 PHE 28 HIS 29 PRO 30 THR 31 PRO 32 PRO 33 ILE 34 HIS 35 ILE 36 PRO 37 GLY 38 GLU 39 VAL 40 HIS 41 ASN 42 LEU 43 LEU 44 GLU 45 ILE 46 CYS 47 ARG 48 VAL 49 GLU 50 THR 51 ILE 52 LEU 53 GLU 54 VAL 55 ASN 56 ASN 57 LEU 58 LYS 59 THR 60 ASN 61 GLU 62 THR 63 THR 64 PRO 65 MET 66 GLN 67 ARG 68 LEU 69 CYS 70 PHE 71 PRO 72 VAL 73 SER 74 VAL 75 GLN 76 SER 77 LYS 78 THR 79 GLY 80 GLU 81 LEU 82 CYS 83 ALA 84 ALA 85 PHE 86 ARG 87 ALA 88 ASP 89 PRO 90 GLY 91 ARG 92 ASP 93 GLY 94 PRO 95 TRP 96 GLN 97 SER 98 THR 99 ILE 100 LEU 101 GLY 102 GLN 103 LEU 104 CYS 105 ARG 106 TYR 107 TYR 108 THR 109 GLN 110 TRP 111 SER 112 GLY 113 SER 114 LEU 115 GLU 116 VAL 117 THR 118 PHE 119 MET 120 PHE 121 ALA 122 GLY 123 SER 124 PHE 125 MET 126 ALA 127 THR 128 GLY 129 LYS 130 MET 131 LEU 132 ILE 133 ALA 134 TYR 135 THR 136 PRO 137 PRO 138 GLY 139 GLY 140 ASN 141 VAL 142 PRO 143 ALA 144 ASP 145 ARG 146 ILE 147 THR 148 ALA 149 MET 150 LEU 151 GLY 152 THR 153 HIS 154 VAL 155 ILE 156 TRP 157 ASP 158 PHE 159 GLY 160 LEU 161 GLN 162 SER 163 SER 164 VAL 165 THR 166 LEU 167 VAL 168 VAL 169 PRO 170 TRP 171 ILE 172 SER 173 ASN 174 THR 175 HIS 176 TYR 177 ARG 178 ALA 179 HIS 180 ALA 181 ARG 182 ALA 183 GLY 184 TYR 185 PHE 186 ASP 187 TYR 188 TYR 189 THR 190 THR 191 GLY 192 ILE 193 ILE 194 THR 195 ILE 196 TRP 197 TYR 198 GLN 199 THR 200 ASN 201 TYR 202 VAL 203 VAL 204 PRO 205 ILE 206 GLY 207 ALA 208 PRO 209 THR 210 THR 211 ALA 212 TYR 213 ILE 214 VAL 215 ALA 216 LEU 217 ALA 218 ALA 219 ALA 220 GLN 221 ASP 222 ASN 223 PHE 224 THR 225 MET 226 LYS 227 LEU 228 CYS 229 LYS 230 ASP 231 THR 232 GLU 233 ASP 234 ILE 235 GLU 236 GLN 237 THR 238 ALA 239 ASN 240 ILE 241 GLN 242

Ligands

Unit 4	SPH 301 K 302 CL 303 CL 304
Unit 5	CL 401 CL 402 CL 403 CL 404
Unit 6	CL 301