5C5Y - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF DEOXYRIBOSE-PHOSPHATE ALDOLASE FROM COL PSYCHRERYTHRAEA (HEXAGONAL FORM)
• Keywords: DERA, TIM BARREL, PSYCHROPHILIC, LYASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5C5Y	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	DEOXYRIBOSE-PHOSPHATE ALDOLASE	A	247	1837	0
2	Protein	DEOXYRIBOSE-PHOSPHATE ALDOLASE	B	246	1833	0
3	Protein	DEOXYRIBOSE-PHOSPHATE ALDOLASE	C	246	1834	0
4	Protein	DEOXYRIBOSE-PHOSPHATE ALDOLASE	D	247	1804	0
5	Ligand	DEOXYRIBOSE-PHOSPHATE ALDOLASE	A	3	0	18
6	Ligand	DEOXYRIBOSE-PHOSPHATE ALDOLASE	B	2	0	12
7	Ligand	DEOXYRIBOSE-PHOSPHATE ALDOLASE	C	1	0	6
8	Ligand	DEOXYRIBOSE-PHOSPHATE ALDOLASE	D	2	0	12
9	Water			438	0	438
total				1432	7308	486

Proteins

Unit 1	SER 2 ASP 3 ILE 4 LYS 5 ALA 6 VAL 7 ALA 8 GLN 9 ARG 10 ALA 11 LEU 12 SER 13 LEU 14 MET 15 ASP 16 LEU 17 THR 18 SER 19 LEU 20 THR 21 ASN 22 THR 23 GLU 24 THR 25 ASP 26 GLN 27 GLU 28 ILE 29 ILE 30 ASP 31 LEU 32 CYS 33 ARG 34 GLN 35 ALA 36 LYS 37 SER 38 PRO 39 ALA 40 GLY 41 GLU 42 THR 43 ALA 44 ALA 45 ILE 46 CYS 47 ILE 48 PHE 49 PRO 50 ARG 51 PHE 52 ILE 53 PRO 54 VAL 55 ALA 56 LYS 57 LYS 58 ALA 59 LEU 60 LYS 61 ALA 62 GLN 63 GLN 64 THR 65 PRO 66 HIS 67 ILE 68 LYS 69 ILE 70 ALA 71 THR 72 VAL 73 THR 74 ASN 75 PHE 76 PRO 77 GLN 78 GLY 79 ASN 80 ASP 81 ASP 82 LEU 83 ASP 84 ILE 85 ALA 86 LEU 87 ALA 88 GLU 89 THR 90 ARG 91 ALA 92 ALA 93 VAL 94 ALA 95 TYR 96 GLY 97 ALA 98 ASP 99 GLU 100 VAL 101 ASP 102 LEU 103 VAL 104 PHE 105 PRO 106 TYR 107 ARG 108 ALA 109 LEU 110 ILE 111 GLN 112 GLY 113 ASN 114 GLU 115 THR 116 ILE 117 GLY 118 PHE 119 ASP 120 MET 121 VAL 122 LYS 123 VAL 124 CYS 125 LYS 126 GLN 127 ALA 128 CYS 129 SER 130 GLY 131 ASN 132 ALA 133 LYS 134 LEU 135 LYS 136 VAL 137 ILE 138 ILE 139 GLU 140 THR 141 GLY 142 GLU 143 LEU 144 LYS 145 SER 146 GLU 147 GLU 148 LEU 149 ILE 150 ARG 151 LYS 152 ALA 153 SER 154 GLU 155 ILE 156 ALA 157 ILE 158 ASN 159 ALA 160 GLY 161 ALA 162 ASP 163 PHE 164 ILE 165 LYS 166 THR 167 SER 168 THR 169 GLY 170 LYS 171 VAL 172 ALA 173 ILE 174 ASN 175 ALA 176 THR 177 PRO 178 GLU 179 ALA 180 ALA 181 LYS 182 VAL 183 MET 184 LEU 185 THR 186 VAL 187 ILE 188 LYS 189 ASN 190 LYS 191 ASN 192 THR 193 ALA 194 VAL 195 GLY 196 PHE 197 LYS 198 PRO 199 ALA 200 GLY 201 GLY 202 VAL 203 ARG 204 ASN 205 ALA 206 ASP 207 ASP 208 ALA 209 ALA 210 ILE 211 TYR 212 LEU 213 ASP 214 LEU 215 ALA 216 ASP 217 ASN 218 ILE 219 LEU 220 GLY 221 ASN 222 GLU 223 TRP 224 ALA 225 ASP 226 ALA 227 ASN 228 HIS 229 PHE 230 ARG 231 PHE 232 GLY 233 ALA 234 SER 235 SER 236 LEU 237 LEU 238 ILE 239 SER 240 LEU 241 LEU 242 ASP 243 THR 244 LEU 245 GLY 246 HIS 247 LYS 248
Unit 2	ASP 3 ILE 4 LYS 5 ALA 6 VAL 7 ALA 8 GLN 9 ARG 10 ALA 11 LEU 12 SER 13 LEU 14 MET 15 ASP 16 LEU 17 THR 18 SER 19 LEU 20 THR 21 ASN 22 THR 23 GLU 24 THR 25 ASP 26 GLN 27 GLU 28 ILE 29 ILE 30 ASP 31 LEU 32 CYS 33 ARG 34 GLN 35 ALA 36 LYS 37 SER 38 PRO 39 ALA 40 GLY 41 GLU 42 THR 43 ALA 44 ALA 45 ILE 46 CYS 47 ILE 48 PHE 49 PRO 50 ARG 51 PHE 52 ILE 53 PRO 54 VAL 55 ALA 56 LYS 57 LYS 58 ALA 59 LEU 60 LYS 61 ALA 62 GLN 63 GLN 64 THR 65 PRO 66 HIS 67 ILE 68 LYS 69 ILE 70 ALA 71 THR 72 VAL 73 THR 74 ASN 75 PHE 76 PRO 77 GLN 78 GLY 79 ASN 80 ASP 81 ASP 82 LEU 83 ASP 84 ILE 85 ALA 86 LEU 87 ALA 88 GLU 89 THR 90 ARG 91 ALA 92 ALA 93 VAL 94 ALA 95 TYR 96 GLY 97 ALA 98 ASP 99 GLU 100 VAL 101 ASP 102 LEU 103 VAL 104 PHE 105 PRO 106 TYR 107 ARG 108 ALA 109 LEU 110 ILE 111 GLN 112 GLY 113 ASN 114 GLU 115 THR 116 ILE 117 GLY 118 PHE 119 ASP 120 MET 121 VAL 122 LYS 123 VAL 124 CYS 125 LYS 126 GLN 127 ALA 128 CYS 129 SER 130 GLY 131 ASN 132 ALA 133 LYS 134 LEU 135 LYS 136 VAL 137 ILE 138 ILE 139 GLU 140 THR 141 GLY 142 GLU 143 LEU 144 LYS 145 SER 146 GLU 147 GLU 148 LEU 149 ILE 150 ARG 151 LYS 152 ALA 153 SER 154 GLU 155 ILE 156 ALA 157 ILE 158 ASN 159 ALA 160 GLY 161 ALA 162 ASP 163 PHE 164 ILE 165 LYS 166 THR 167 SER 168 THR 169 GLY 170 LYS 171 VAL 172 ALA 173 ILE 174 ASN 175 ALA 176 THR 177 PRO 178 GLU 179 ALA 180 ALA 181 LYS 182 VAL 183 MET 184 LEU 185 THR 186 VAL 187 ILE 188 LYS 189 ASN 190 LYS 191 ASN 192 THR 193 ALA 194 VAL 195 GLY 196 PHE 197 LYS 198 PRO 199 ALA 200 GLY 201 GLY 202 VAL 203 ARG 204 ASN 205 ALA 206 ASP 207 ASP 208 ALA 209 ALA 210 ILE 211 TYR 212 LEU 213 ASP 214 LEU 215 ALA 216 ASP 217 ASN 218 ILE 219 LEU 220 GLY 221 ASN 222 GLU 223 TRP 224 ALA 225 ASP 226 ALA 227 ASN 228 HIS 229 PHE 230 ARG 231 PHE 232 GLY 233 ALA 234 SER 235 SER 236 LEU 237 LEU 238 ILE 239 SER 240 LEU 241 LEU 242 ASP 243 THR 244 LEU 245 GLY 246 HIS 247 LYS 248
Unit 3	SER 2 ASP 3 ILE 4 LYS 5 ALA 6 VAL 7 ALA 8 GLN 9 ARG 10 ALA 11 LEU 12 SER 13 LEU 14 MET 15 ASP 16 LEU 17 THR 18 SER 19 LEU 20 THR 21 ASN 22 THR 23 GLU 24 THR 25 ASP 26 GLN 27 GLU 28 ILE 29 ILE 30 ASP 31 LEU 32 CYS 33 ARG 34 GLN 35 ALA 36 LYS 37 SER 38 PRO 39 ALA 40 GLY 41 GLU 42 THR 43 ALA 44 ALA 45 ILE 46 CYS 47 ILE 48 PHE 49 PRO 50 ARG 51 PHE 52 ILE 53 PRO 54 VAL 55 ALA 56 LYS 57 LYS 58 ALA 59 LEU 60 LYS 61 ALA 62 GLN 63 GLN 64 THR 65 PRO 66 HIS 67 ILE 68 LYS 69 ILE 70 ALA 71 THR 72 VAL 73 THR 74 ASN 75 PHE 76 PRO 77 GLN 78 GLY 79 ASN 80 ASP 81 ASP 82 LEU 83 ASP 84 ILE 85 ALA 86 LEU 87 ALA 88 GLU 89 THR 90 ARG 91 ALA 92 ALA 93 VAL 94 ALA 95 TYR 96 GLY 97 ALA 98 ASP 99 GLU 100 VAL 101 ASP 102 LEU 103 VAL 104 PHE 105 PRO 106 TYR 107 ARG 108 ALA 109 LEU 110 ILE 111 GLN 112 GLY 113 ASN 114 GLU 115 THR 116 ILE 117 GLY 118 PHE 119 ASP 120 MET 121 VAL 122 LYS 123 VAL 124 CYS 125 LYS 126 GLN 127 ALA 128 CYS 129 SER 130 GLY 131 ASN 132 ALA 133 LYS 134 LEU 135 LYS 136 VAL 137 ILE 138 ILE 139 GLU 140 THR 141 GLY 142 GLU 143 LEU 144 LYS 145 SER 146 GLU 147 GLU 148 LEU 149 ILE 150 ARG 151 LYS 152 ALA 153 SER 154 GLU 155 ILE 156 ALA 157 ILE 158 ASN 159 ALA 160 GLY 161 ALA 162 ASP 163 PHE 164 ILE 165 LYS 166 THR 167 SER 168 THR 169 GLY 170 LYS 171 VAL 172 ALA 173 ILE 174 ASN 175 ALA 176 THR 177 PRO 178 GLU 179 ALA 180 ALA 181 LYS 182 VAL 183 MET 184 LEU 185 THR 186 VAL 187 ILE 188 LYS 189 ASN 190 LYS 191 ASN 192 THR 193 ALA 194 VAL 195 GLY 196 PHE 197 LYS 198 PRO 199 ALA 200 GLY 201 GLY 202 VAL 203 ARG 204 ASN 205 ALA 206 ASP 207 ASP 208 ALA 209 ALA 210 ILE 211 TYR 212 LEU 213 ASP 214 LEU 215 ALA 216 ASP 217 ASN 218 ILE 219 LEU 220 GLY 221 ASN 222 GLU 223 TRP 224 ALA 225 ASP 226 ALA 227 ASN 228 HIS 229 PHE 230 ARG 231 PHE 232 GLY 233 ALA 234 SER 235 SER 236 LEU 237 LEU 238 ILE 239 SER 240 LEU 241 LEU 242 ASP 243 THR 244 LEU 245 GLY 246 HIS 247
Unit 4	SER 2 ASP 3 ILE 4 LYS 5 ALA 6 VAL 7 ALA 8 GLN 9 ARG 10 ALA 11 LEU 12 SER 13 LEU 14 MET 15 ASP 16 LEU 17 THR 18 SER 19 LEU 20 THR 21 ASN 22 THR 23 GLU 24 THR 25 ASP 26 GLN 27 GLU 28 ILE 29 ILE 30 ASP 31 LEU 32 CYS 33 ARG 34 GLN 35 ALA 36 LYS 37 SER 38 PRO 39 ALA 40 GLY 41 GLU 42 THR 43 ALA 44 ALA 45 ILE 46 CYS 47 ILE 48 PHE 49 PRO 50 ARG 51 PHE 52 ILE 53 PRO 54 VAL 55 ALA 56 LYS 57 LYS 58 ALA 59 LEU 60 LYS 61 ALA 62 GLN 63 GLN 64 THR 65 PRO 66 HIS 67 ILE 68 LYS 69 ILE 70 ALA 71 THR 72 VAL 73 THR 74 ASN 75 PHE 76 PRO 77 GLN 78 GLY 79 ASN 80 ASP 81 ASP 82 LEU 83 ASP 84 ILE 85 ALA 86 LEU 87 ALA 88 GLU 89 THR 90 ARG 91 ALA 92 ALA 93 VAL 94 ALA 95 TYR 96 GLY 97 ALA 98 ASP 99 GLU 100 VAL 101 ASP 102 LEU 103 VAL 104 PHE 105 PRO 106 TYR 107 ARG 108 ALA 109 LEU 110 ILE 111 GLN 112 GLY 113 ASN 114 GLU 115 THR 116 ILE 117 GLY 118 PHE 119 ASP 120 MET 121 VAL 122 LYS 123 VAL 124 CYS 125 LYS 126 GLN 127 ALA 128 CYS 129 SER 130 GLY 131 ASN 132 ALA 133 LYS 134 LEU 135 LYS 136 VAL 137 ILE 138 ILE 139 GLU 140 THR 141 GLY 142 GLU 143 LEU 144 LYS 145 SER 146 GLU 147 GLU 148 LEU 149 ILE 150 ARG 151 LYS 152 ALA 153 SER 154 GLU 155 ILE 156 ALA 157 ILE 158 ASN 159 ALA 160 GLY 161 ALA 162 ASP 163 PHE 164 ILE 165 LYS 166 THR 167 SER 168 THR 169 GLY 170 LYS 171 VAL 172 ALA 173 ILE 174 ASN 175 ALA 176 THR 177 PRO 178 GLU 179 ALA 180 ALA 181 LYS 182 VAL 183 MET 184 LEU 185 THR 186 VAL 187 ILE 188 LYS 189 ASN 190 LYS 191 ASN 192 THR 193 ALA 194 VAL 195 GLY 196 PHE 197 LYS 198 PRO 199 ALA 200 GLY 201 GLY 202 VAL 203 ARG 204 ASN 205 ALA 206 ASP 207 ASP 208 ALA 209 ALA 210 ILE 211 TYR 212 LEU 213 ASP 214 LEU 215 ALA 216 ASP 217 ASN 218 ILE 219 LEU 220 GLY 221 ASN 222 GLU 223 TRP 224 ALA 225 ASP 226 ALA 227 ASN 228 HIS 229 PHE 230 ARG 231 PHE 232 GLY 233 ALA 234 SER 235 SER 236 LEU 237 LEU 238 ILE 239 SER 240 LEU 241 LEU 242 ASP 243 THR 244 LEU 245 GLY 246 HIS 247 LYS 248

Ligands

Unit 5	UNL 301 GOL 302 GOL 303
Unit 6	UNL 301 GOL 302
Unit 7	UNL 301
Unit 8	UNL 301 GOL 302