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Sequence, Chains, Asymmetric and Biological Units

Title 1E6 TCR IN COMPLEX WITH HLA-A02 CARRYING RQFGPDFPTI
Keywords IMMUNO, HLA-A02, 1E6-TCR, IMMUNE SYSTEM
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5C0B     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein    A 275 2246 0
2  Protein   BETA-2-MICROGLOBULIN  B 100 836 0
3  Protein   MARKER PEPTIDE  C 10 84 0
4  Protein   1E6 TCR ALPHA CHAIN  D 197 1557 0
5  Protein   1E6 TCR BETA CHAIN  E 247 1981 0
6  Protein    F 275 2246 0
7  Protein   BETA-2-MICROGLOBULIN  G 100 837 0
8  Protein   MARKER PEPTIDE  H 10 84 0
9  Protein   1E6 TCR ALPHA CHAIN  I 199 1570 0
10  Protein   1E6 TCR BETA CHAIN  J 244 1961 0
11  Ligand    A 12 0 52
12  Ligand   BETA-2-MICROGLOBULIN  B 7 0 31
13  Ligand   1E6 TCR ALPHA CHAIN  D 6 0 24
14  Ligand   1E6 TCR BETA CHAIN  E 13 0 56
15  Ligand    F 11 0 49
16  Ligand   BETA-2-MICROGLOBULIN  G 4 0 16
17  Ligand   MARKER PEPTIDE  H 1 0 4
18  Ligand   1E6 TCR ALPHA CHAIN  I 8 0 34
19  Ligand   1E6 TCR BETA CHAIN  J 8 0 40
20 Water     472 0 472
total       2199 13402 778
Proteins
Unit 1 GLY1 SER2 HIS3 SER4 MET5 ARG6 TYR7 PHE8 PHE9 THR10 SER11 VAL12 SER13 ARG14 PRO15 GLY16 ARG17 GLY18 GLU19 PRO20 ARG21 PHE22 ILE23 ALA24 VAL25 GLY26 TYR27 VAL28 ASP29 ASP30 THR31 GLN32 PHE33 VAL34 ARG35 PHE36 ASP37 SER38 ASP39 ALA40 ALA41 SER42 GLN43 ARG44 MET45 GLU46 PRO47 ARG48 ALA49 PRO50 TRP51 ILE52 GLU53 GLN54 GLU55 GLY56 PRO57 GLU58 TYR59 TRP60 ASP61 GLY62 GLU63 THR64 ARG65 LYS66 VAL67 LYS68 ALA69 HIS70 SER71 GLN72 THR73 HIS74 ARG75 VAL76 ASP77 LEU78 GLY79 THR80 LEU81 ARG82 GLY83 TYR84 TYR85 ASN86 GLN87 SER88 GLU89 ALA90 GLY91 SER92 HIS93 THR94 VAL95 GLN96 ARG97 MET98 TYR99 GLY100 CYS101 ASP102 VAL103 GLY104 SER105 ASP106 TRP107 ARG108 PHE109 LEU110 ARG111 GLY112 TYR113 HIS114 GLN115 TYR116 ALA117 TYR118 ASP119 GLY120 LYS121 ASP122 TYR123 ILE124 ALA125 LEU126 LYS127 GLU128 ASP129 LEU130 ARG131 SER132 TRP133 THR134 ALA135 ALA136 ASP137 MET138 ALA139 ALA140 GLN141 THR142 THR143 LYS144 HIS145 LYS146 TRP147 GLU148 ALA149 ALA150 HIS151 VAL152 ALA153 GLU154 GLN155 LEU156 ARG157 ALA158 TYR159 LEU160 GLU161 GLY162 THR163 CYS164 VAL165 GLU166 TRP167 LEU168 ARG169 ARG170 TYR171 LEU172 GLU173 ASN174 GLY175 LYS176 GLU177 THR178 LEU179 GLN180 ARG181 THR182 ASP183 ALA184 PRO185 LYS186 THR187 HIS188 MET189 THR190 HIS191 HIS192 ALA193 VAL194 SER195 ASP196 HIS197 GLU198 ALA199 THR200 LEU201 ARG202 CYS203 TRP204 ALA205 LEU206 SER207 PHE208 TYR209 PRO210 ALA211 GLU212 ILE213 THR214 LEU215 THR216 TRP217 GLN218 ARG219 ASP220 GLY221 GLU222 ASP223 GLN224 THR225 GLN226 ASP227 THR228 GLU229 LEU230 VAL231 GLU232 THR233 ARG234 PRO235 ALA236 GLY237 ASP238 GLY239 THR240 PHE241 GLN242 LYS243 TRP244 ALA245 ALA246 VAL247 VAL248 VAL249 PRO250 SER251 GLY252 GLN253 GLU254 GLN255 ARG256 TYR257 THR258 CYS259 HIS260 VAL261 GLN262 HIS263 GLU264 GLY265 LEU266 PRO267 LYS268 PRO269 LEU270 THR271 LEU272 ARG273 TRP274 GLU275
Unit 2 MET0 ILE1 GLN2 ARG3 THR4 PRO5 LYS6 ILE7 GLN8 VAL9 TYR10 SER11 ARG12 HIS13 PRO14 ALA15 GLU16 ASN17 GLY18 LYS19 SER20 ASN21 PHE22 LEU23 ASN24 CYS25 TYR26 VAL27 SER28 GLY29 PHE30 HIS31 PRO32 SER33 ASP34 ILE35 GLU36 VAL37 ASP38 LEU39 LEU40 LYS41 ASN42 GLY43 GLU44 ARG45 ILE46 GLU47 LYS48 VAL49 GLU50 HIS51 SER52 ASP53 LEU54 SER55 PHE56 SER57 LYS58 ASP59 TRP60 SER61 PHE62 TYR63 LEU64 LEU65 TYR66 TYR67 THR68 GLU69 PHE70 THR71 PRO72 THR73 GLU74 LYS75 ASP76 GLU77 TYR78 ALA79 CYS80 ARG81 VAL82 ASN83 HIS84 VAL85 THR86 LEU87 SER88 GLN89 PRO90 LYS91 ILE92 VAL93 LYS94 TRP95 ASP96 ARG97 ASP98 MET99
Unit 3 ARG1 GLN2 PHE3 GLY4 PRO5 ASP6 PHE7 PRO8 THR9 ILE10
Unit 4 GLU3 VAL4 GLU5 GLN6 ASP7 PRO8 GLY9 PRO10 LEU11 SER12 VAL13 PRO14 GLU15 GLY16 ALA17 ILE18 VAL19 SER20 LEU21 ASN22 CYS23 THR24 TYR25 SER26 ASN27 SER28 ALA29 PHE30 GLN31 TYR32 PHE33 MET34 TRP35 TYR36 ARG37 GLN38 TYR39 SER40 ARG41 LYS42 GLY43 PRO44 GLU45 LEU46 LEU47 MET48 TYR49 THR50 TYR51 SER52 SER53 GLY54 ASN55 LYS56 GLU57 ASP58 GLY59 ARG60 PHE61 THR62 ALA63 GLN64 VAL65 ASP66 LYS67 SER68 SER69 LYS70 TYR71 ILE72 SER73 LEU74 PHE75 ILE76 ARG77 ASP78 SER79 GLN80 PRO81 SER82 ASP83 SER84 ALA85 THR86 TYR87 LEU88 CYS89 ALA90 MET91 ARG92 GLY93 ASP94 SER95 SER96 TYR97 LYS98 LEU99 ILE100 PHE101 GLY102 SER103 GLY104 THR105 ARG106 LEU107 LEU108 VAL109 ARG110 PRO111 ASP112 ILE113 GLN114 ASN115 PRO116 ASP117 PRO118 ALA119 VAL120 TYR121 GLN122 LEU123 ARG124 ASP125 SER126 LYS127 SER128 SER129 ASP130 LYS131 SER132 VAL133 CYS134 LEU135 PHE136 THR137 ASP138 PHE139 ASP140 SER141 GLN142 THR143 ASN144 VAL145 SER146 GLN147 SER148 LYS149 ASP150 SER151 ASP152 VAL153 TYR154 ILE155 THR156 ASP157 LYS158 CYS159 VAL160 LEU161 ASP162 MET163 ARG164 SER165 MET166 ASP167 PHE168 LYS169 SER170 ASN171 SER172 ALA173 VAL174 ALA175 TRP176 SER177 ASN178 LYS179 SER180 ASP181 PHE182 ALA183 CYS184 ALA185 ASN186 ALA187 PHE188 ASN189 ASN190 SER191 ILE192 ILE193 PRO194 GLU195 ASP196 THR197 PHE198 PHE199
Unit 5 MET0 ASP1 ALA2 GLY3 VAL4 ILE5 GLN6 SER7 PRO8 ARG9 HIS10 GLU11 VAL12 THR13 GLU14 MET15 GLY16 GLN17 GLN18 VAL19 THR20 LEU21 ARG22 CYS23 LYS24 PRO25 ILE26 SER27 GLY28 HIS29 ASP30 TYR31 LEU32 PHE33 TRP34 TYR35 ARG36 GLN37 THR38 MET39 MET40 ARG41 GLY42 LEU43 GLU44 LEU45 LEU46 ILE47 TYR48 PHE49 ASN50 ASN51 ASN52 VAL53 PRO54 ILE55 ASP56 ASP57 SER58 GLY59 MET60 PRO61 GLU62 ASP63 ARG64 PHE65 SER66 ALA67 LYS68 MET69 PRO70 ASN71 ALA72 SER73 PHE74 SER75 THR76 LEU77 LYS78 ILE79 GLN80 PRO81 SER82 GLU83 PRO84 ARG85 ASP86 SER87 ALA88 VAL89 TYR90 PHE91 CYS92 ALA93 SER94 SER95 LEU96 TRP97 GLU98 LYS99 LEU100 ALA101 LYS102 ASN103 ILE104 GLN105 TYR106 PHE107 GLY108 ALA109 GLY110 THR111 ARG112 LEU113 SER114 VAL115 LEU116 GLU117 ASP118 LEU119 LYS120 ASN121 VAL122 PHE123 PRO124 PRO125 GLU126 VAL127 ALA128 VAL129 PHE130 GLU131 PRO132 SER133 GLU134 ALA135 GLU136 ILE137 SER138 HIS139 THR140 GLN141 LYS142 ALA143 THR144 LEU145 VAL146 CYS147 LEU148 ALA149 THR150 GLY151 PHE152 TYR153 PRO154 ASP155 HIS156 VAL157 GLU158 LEU159 SER160 TRP161 TRP162 VAL163 ASN164 GLY165 LYS166 GLU167 VAL168 HIS169 SER170 GLY171 VAL172 CYS173 THR174 ASP175 PRO176 GLN177 PRO178 LEU179 LYS180 GLU181 GLN182 PRO183 ALA184 LEU185 ASN186 ASP187 SER188 ARG189 TYR190 ALA191 LEU192 SER193 SER194 ARG195 LEU196 ARG197 VAL198 SER199 ALA200 THR201 PHE202 TRP203 GLN204 ASP205 PRO206 ARG207 ASN208 HIS209 PHE210 ARG211 CYS212 GLN213 VAL214 GLN215 PHE216 TYR217 GLY218 LEU219 SER220 GLU221 ASN222 ASP223 GLU224 TRP225 THR226 GLN227 ASP228 ARG229 ALA230 LYS231 PRO232 VAL233 THR234 GLN235 ILE236 VAL237 SER238 ALA239 GLU240 ALA241 TRP242 GLY243 ARG244 ALA245 ASP246
Unit 6 GLY1 SER2 HIS3 SER4 MET5 ARG6 TYR7 PHE8 PHE9 THR10 SER11 VAL12 SER13 ARG14 PRO15 GLY16 ARG17 GLY18 GLU19 PRO20 ARG21 PHE22 ILE23 ALA24 VAL25 GLY26 TYR27 VAL28 ASP29 ASP30 THR31 GLN32 PHE33 VAL34 ARG35 PHE36 ASP37 SER38 ASP39 ALA40 ALA41 SER42 GLN43 ARG44 MET45 GLU46 PRO47 ARG48 ALA49 PRO50 TRP51 ILE52 GLU53 GLN54 GLU55 GLY56 PRO57 GLU58 TYR59 TRP60 ASP61 GLY62 GLU63 THR64 ARG65 LYS66 VAL67 LYS68 ALA69 HIS70 SER71 GLN72 THR73 HIS74 ARG75 VAL76 ASP77 LEU78 GLY79 THR80 LEU81 ARG82 GLY83 TYR84 TYR85 ASN86 GLN87 SER88 GLU89 ALA90 GLY91 SER92 HIS93 THR94 VAL95 GLN96 ARG97 MET98 TYR99 GLY100 CYS101 ASP102 VAL103 GLY104 SER105 ASP106 TRP107 ARG108 PHE109 LEU110 ARG111 GLY112 TYR113 HIS114 GLN115 TYR116 ALA117 TYR118 ASP119 GLY120 LYS121 ASP122 TYR123 ILE124 ALA125 LEU126 LYS127 GLU128 ASP129 LEU130 ARG131 SER132 TRP133 THR134 ALA135 ALA136 ASP137 MET138 ALA139 ALA140 GLN141 THR142 THR143 LYS144 HIS145 LYS146 TRP147 GLU148 ALA149 ALA150 HIS151 VAL152 ALA153 GLU154 GLN155 LEU156 ARG157 ALA158 TYR159 LEU160 GLU161 GLY162 THR163 CYS164 VAL165 GLU166 TRP167 LEU168 ARG169 ARG170 TYR171 LEU172 GLU173 ASN174 GLY175 LYS176 GLU177 THR178 LEU179 GLN180 ARG181 THR182 ASP183 ALA184 PRO185 LYS186 THR187 HIS188 MET189 THR190 HIS191 HIS192 ALA193 VAL194 SER195 ASP196 HIS197 GLU198 ALA199 THR200 LEU201 ARG202 CYS203 TRP204 ALA205 LEU206 SER207 PHE208 TYR209 PRO210 ALA211 GLU212 ILE213 THR214 LEU215 THR216 TRP217 GLN218 ARG219 ASP220 GLY221 GLU222 ASP223 GLN224 THR225 GLN226 ASP227 THR228 GLU229 LEU230 VAL231 GLU232 THR233 ARG234 PRO235 ALA236 GLY237 ASP238 GLY239 THR240 PHE241 GLN242 LYS243 TRP244 ALA245 ALA246 VAL247 VAL248 VAL249 PRO250 SER251 GLY252 GLN253 GLU254 GLN255 ARG256 TYR257 THR258 CYS259 HIS260 VAL261 GLN262 HIS263 GLU264 GLY265 LEU266 PRO267 LYS268 PRO269 LEU270 THR271 LEU272 ARG273 TRP274 GLU275
Unit 7 MET0 ILE1 GLN2 ARG3 THR4 PRO5 LYS6 ILE7 GLN8 VAL9 TYR10 SER11 ARG12 HIS13 PRO14 ALA15 GLU16 ASN17 GLY18 LYS19 SER20 ASN21 PHE22 LEU23 ASN24 CYS25 TYR26 VAL27 SER28 GLY29 PHE30 HIS31 PRO32 SER33 ASP34 ILE35 GLU36 VAL37 ASP38 LEU39 LEU40 LYS41 ASN42 GLY43 GLU44 ARG45 ILE46 GLU47 LYS48 VAL49 GLU50 HIS51 SER52 ASP53 LEU54 SER55 PHE56 SER57 LYS58 ASP59 TRP60 SER61 PHE62 TYR63 LEU64 LEU65 TYR66 TYR67 THR68 GLU69 PHE70 THR71 PRO72 THR73 GLU74 LYS75 ASP76 GLU77 TYR78 ALA79 CYS80 ARG81 VAL82 ASN83 HIS84 VAL85 THR86 LEU87 SER88 GLN89 PRO90 LYS91 ILE92 VAL93 LYS94 TRP95 ASP96 ARG97 ASP98 MET99
Unit 8 ARG1 GLN2 PHE3 GLY4 PRO5 ASP6 PHE7 PRO8 THR9 ILE10
Unit 9 GLU3 VAL4 GLU5 GLN6 ASP7 PRO8 GLY9 PRO10 LEU11 SER12 VAL13 PRO14 GLU15 GLY16 ALA17 ILE18 VAL19 SER20 LEU21 ASN22 CYS23 THR24 TYR25 SER26 ASN27 SER28 ALA29 PHE30 GLN31 TYR32 PHE33 MET34 TRP35 TYR36 ARG37 GLN38 TYR39 SER40 ARG41 LYS42 GLY43 PRO44 GLU45 LEU46 LEU47 MET48 TYR49 THR50 TYR51 SER52 SER53 GLY54 ASN55 LYS56 GLU57 ASP58 GLY59 ARG60 PHE61 THR62 ALA63 GLN64 VAL65 ASP66 LYS67 SER68 SER69 LYS70 TYR71 ILE72 SER73 LEU74 PHE75 ILE76 ARG77 ASP78 SER79 GLN80 PRO81 SER82 ASP83 SER84 ALA85 THR86 TYR87 LEU88 CYS89 ALA90 MET91 ARG92 GLY93 ASP94 SER95 SER96 TYR97 LYS98 LEU99 ILE100 PHE101 GLY102 SER103 GLY104 THR105 ARG106 LEU107 LEU108 VAL109 ARG110 PRO111 ASP112 ILE113 GLN114 ASN115 PRO116 ASP117 PRO118 ALA119 VAL120 TYR121 GLN122 LEU123 ARG124 ASP125 SER126 LYS127 SER128 SER129 ASP130 LYS131 SER132 VAL133 CYS134 LEU135 PHE136 THR137 ASP138 PHE139 ASP140 SER141 GLN142 THR143 ASN144 VAL145 SER146 GLN147 SER148 LYS149 ASP150 SER151 ASP152 VAL153 TYR154 ILE155 THR156 ASP157 LYS158 CYS159 VAL160 LEU161 ASP162 MET163 ARG164 SER165 MET166 ASP167 PHE168 LYS169 SER170 ASN171 SER172 ALA173 VAL174 ALA175 TRP176 SER177 ASN178 LYS179 SER180 ASP181 PHE182 ALA183 CYS184 ALA185 ASN186 ALA187 PHE188 ASN189 ASN190 SER191 ILE192 ILE193 PRO194 GLU195 ASP196 THR197 PHE198 PHE199 PRO200 SER201
Unit 10 GLY3 VAL4 ILE5 GLN6 SER7 PRO8 ARG9 HIS10 GLU11 VAL12 THR13 GLU14 MET15 GLY16 GLN17 GLN18 VAL19 THR20 LEU21 ARG22 CYS23 LYS24 PRO25 ILE26 SER27 GLY28 HIS29 ASP30 TYR31 LEU32 PHE33 TRP34 TYR35 ARG36 GLN37 THR38 MET39 MET40 ARG41 GLY42 LEU43 GLU44 LEU45 LEU46 ILE47 TYR48 PHE49 ASN50 ASN51 ASN52 VAL53 PRO54 ILE55 ASP56 ASP57 SER58 GLY59 MET60 PRO61 GLU62 ASP63 ARG64 PHE65 SER66 ALA67 LYS68 MET69 PRO70 ASN71 ALA72 SER73 PHE74 SER75 THR76 LEU77 LYS78 ILE79 GLN80 PRO81 SER82 GLU83 PRO84 ARG85 ASP86 SER87 ALA88 VAL89 TYR90 PHE91 CYS92 ALA93 SER94 SER95 LEU96 TRP97 GLU98 LYS99 LEU100 ALA101 LYS102 ASN103 ILE104 GLN105 TYR106 PHE107 GLY108 ALA109 GLY110 THR111 ARG112 LEU113 SER114 VAL115 LEU116 GLU117 ASP118 LEU119 LYS120 ASN121 VAL122 PHE123 PRO124 PRO125 GLU126 VAL127 ALA128 VAL129 PHE130 GLU131 PRO132 SER133 GLU134 ALA135 GLU136 ILE137 SER138 HIS139 THR140 GLN141 LYS142 ALA143 THR144 LEU145 VAL146 CYS147 LEU148 ALA149 THR150 GLY151 PHE152 TYR153 PRO154 ASP155 HIS156 VAL157 GLU158 LEU159 SER160 TRP161 TRP162 VAL163 ASN164 GLY165 LYS166 GLU167 VAL168 HIS169 SER170 GLY171 VAL172 CYS173 THR174 ASP175 PRO176 GLN177 PRO178 LEU179 LYS180 GLU181 GLN182 PRO183 ALA184 LEU185 ASN186 ASP187 SER188 ARG189 TYR190 ALA191 LEU192 SER193 SER194 ARG195 LEU196 ARG197 VAL198 SER199 ALA200 THR201 PHE202 TRP203 GLN204 ASP205 PRO206 ARG207 ASN208 HIS209 PHE210 ARG211 CYS212 GLN213 VAL214 GLN215 PHE216 TYR217 GLY218 LEU219 SER220 GLU221 ASN222 ASP223 GLU224 TRP225 THR226 GLN227 ASP228 ARG229 ALA230 LYS231 PRO232 VAL233 THR234 GLN235 ILE236 VAL237 SER238 ALA239 GLU240 ALA241 TRP242 GLY243 ARG244 ALA245 ASP246
Ligands
Unit 11 EDO301 EDO302 EDO303 EDO304 EDO305 EDO306 EDO307 EDO308 EDO309 GOL310 SO4311 SO4312
Unit 12 EDO301 EDO302 EDO303 EDO304 EDO305 GOL306 SO4307
Unit 13 EDO301 EDO302 EDO303 EDO304 EDO305 EDO306
Unit 14 EDO301 EDO302 EDO303 EDO304 EDO305 EDO306 EDO307 EDO308 EDO309 EDO310 GOL311 SO4312 SO4313
Unit 15 EDO301 EDO302 EDO303 EDO304 EDO305 EDO306 EDO307 GOL308 SO4309 SO4310 SO4311
Unit 16 EDO101 EDO102 EDO103 EDO104
Unit 17 EDO101
Unit 18 EDO301 EDO302 EDO303 EDO304 EDO305 EDO306 EDO307 GOL308
Unit 19 EDO301 EDO302 EDO303 EDO304 EDO305 EDO306 GOL307 PG4308
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany