5BY6 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF TRICHINELLA SPIRALIS THYMIDYLATE SYNTHA COMPLEXED WITH DUMP
• Keywords: TRICHINELLA SPIRALIS, PARASITIC NEMATODE, PROTEIN-LIGAND COM METHYLTRANSFERASE, TRANSFERASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5BY6	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	THYMIDYLATE SYNTHASE	A	284	2323	0
2	Protein	THYMIDYLATE SYNTHASE	B	288	2352	0
3	Protein	THYMIDYLATE SYNTHASE	C	286	2337	0
4	Protein	THYMIDYLATE SYNTHASE	D	282	2306	0
5	Ligand	THYMIDYLATE SYNTHASE	A	6	0	52
6	Ligand	THYMIDYLATE SYNTHASE	B	1	0	20
7	Ligand	THYMIDYLATE SYNTHASE	C	2	0	26
8	Ligand	THYMIDYLATE SYNTHASE	D	4	0	38
9	Water			862	0	862
total				2015	9318	998

Proteins

Unit 1	ASP 17 TYR 18 VAL 19 ASN 20 GLN 21 GLU 22 GLU 23 LEU 24 ASN 25 TYR 26 LEU 27 ASN 28 GLN 29 LEU 30 LYS 31 ASP 32 ILE 33 ILE 34 ASP 35 HIS 36 GLY 37 VAL 38 ARG 39 LYS 40 ASN 41 ASP 42 ARG 43 THR 44 GLY 45 ILE 46 GLY 47 THR 48 LEU 49 SER 50 THR 51 PHE 52 GLY 53 THR 54 GLN 55 SER 56 ARG 57 TYR 58 CYS 59 LEU 60 ARG 61 ASP 62 ASP 63 ILE 64 PHE 65 PRO 66 LEU 67 LEU 68 THR 69 THR 70 LYS 71 ARG 72 VAL 73 PHE 74 TRP 75 ARG 76 GLY 77 VAL 78 VAL 79 GLU 80 GLU 81 LEU 82 LEU 83 TRP 84 PHE 85 ILE 86 SER 87 GLY 88 SER 89 THR 90 ASN 91 ALA 92 LYS 93 GLN 94 LEU 95 SER 96 GLU 97 LYS 98 ASN 99 VAL 100 ASN 101 ILE 102 TRP 103 ASP 104 GLY 105 ASN 106 SER 107 SER 108 ARG 109 GLU 110 PHE 111 LEU 112 ASP 113 SER 114 ARG 115 GLY 116 LEU 117 TYR 118 ASN 119 TYR 120 GLU 121 GLU 122 GLY 123 ASP 124 LEU 125 GLY 126 PRO 127 VAL 128 TYR 129 GLY 130 PHE 131 GLN 132 TRP 133 ARG 134 HIS 135 PHE 136 GLY 137 CYS 138 PRO 139 TYR 140 SER 141 SER 142 MET 143 THR 144 ALA 145 ASP 146 TYR 147 LYS 148 GLY 149 LYS 150 GLY 151 TYR 152 ASP 153 GLN 154 LEU 155 GLN 156 GLN 157 CYS 158 ILE 159 LYS 160 MET 161 ILE 162 ARG 163 GLU 164 GLU 165 PRO 166 GLU 167 SER 168 ARG 169 ARG 170 ILE 171 ILE 172 MET 173 THR 174 ALA 175 TRP 176 ASN 177 PRO 178 CYS 179 ASP 180 LEU 181 GLU 182 LYS 183 VAL 184 ALA 185 LEU 186 PRO 187 PRO 188 CYS 189 HIS 190 CYS 191 PHE 192 VAL 193 GLN 194 PHE 195 TYR 196 VAL 197 ALA 198 ASP 199 GLY 200 GLU 201 LEU 202 SER 203 CYS 204 GLN 205 MET 206 TYR 207 GLN 208 ARG 209 SER 210 ALA 211 ASP 212 MET 213 GLY 214 LEU 215 GLY 216 VAL 217 PRO 218 PHE 219 ASN 220 ILE 221 ALA 222 SER 223 TYR 224 SER 225 LEU 226 LEU 227 THR 228 ARG 229 MET 230 ILE 231 ALA 232 HIS 233 ILE 234 THR 235 SER 236 LEU 237 LYS 238 PRO 239 GLY 240 PHE 241 PHE 242 ILE 243 HIS 244 THR 245 ILE 246 GLY 247 ASP 248 ALA 249 HIS 250 VAL 251 TYR 252 LEU 253 THR 254 HIS 255 VAL 256 ASP 257 ALA 258 LEU 259 LYS 260 VAL 261 GLN 262 MET 263 GLU 264 ARG 265 LYS 266 PRO 267 ARG 268 PRO 269 PHE 270 PRO 271 LYS 272 LEU 273 LYS 274 ILE 275 LEU 276 ARG 277 ASN 278 VAL 279 GLU 280 ASN 281 ILE 282 ASP 283 ASP 284 PHE 285 ARG 286 ALA 287 GLU 288 ASP 289 PHE 290 GLU 291 LEU 292 ILE 293 ASN 294 TYR 295 LYS 296 PRO 297 TYR 298 PRO 299 LYS 300
Unit 2	ASP 17 TYR 18 VAL 19 ASN 20 GLN 21 GLU 22 GLU 23 LEU 24 ASN 25 TYR 26 LEU 27 ASN 28 GLN 29 LEU 30 LYS 31 ASP 32 ILE 33 ILE 34 ASP 35 HIS 36 GLY 37 VAL 38 ARG 39 LYS 40 ASN 41 ASP 42 ARG 43 THR 44 GLY 45 ILE 46 GLY 47 THR 48 LEU 49 SER 50 THR 51 PHE 52 GLY 53 THR 54 GLN 55 SER 56 ARG 57 TYR 58 CYS 59 LEU 60 ARG 61 ASP 62 ASP 63 ILE 64 PHE 65 PRO 66 LEU 67 LEU 68 THR 69 THR 70 LYS 71 ARG 72 VAL 73 PHE 74 TRP 75 ARG 76 GLY 77 VAL 78 VAL 79 GLU 80 GLU 81 LEU 82 LEU 83 TRP 84 PHE 85 ILE 86 SER 87 GLY 88 SER 89 THR 90 ASN 91 ALA 92 LYS 93 GLN 94 LEU 95 SER 96 GLU 97 LYS 98 ASN 99 VAL 100 ASN 101 ILE 102 TRP 103 ASP 104 GLY 105 ASN 106 SER 107 SER 108 ARG 109 GLU 110 PHE 111 LEU 112 ASP 113 SER 114 ARG 115 GLY 116 LEU 117 TYR 118 ASN 119 TYR 120 GLU 121 GLU 122 GLY 123 ASP 124 LEU 125 GLY 126 PRO 127 VAL 128 TYR 129 GLY 130 PHE 131 GLN 132 TRP 133 ARG 134 HIS 135 PHE 136 GLY 137 CYS 138 PRO 139 TYR 140 SER 141 SER 142 MET 143 THR 144 ALA 145 ASP 146 TYR 147 LYS 148 GLY 149 LYS 150 GLY 151 TYR 152 ASP 153 GLN 154 LEU 155 GLN 156 GLN 157 CYS 158 ILE 159 LYS 160 MET 161 ILE 162 ARG 163 GLU 164 GLU 165 PRO 166 GLU 167 SER 168 ARG 169 ARG 170 ILE 171 ILE 172 MET 173 THR 174 ALA 175 TRP 176 ASN 177 PRO 178 CYS 179 ASP 180 LEU 181 GLU 182 LYS 183 VAL 184 ALA 185 LEU 186 PRO 187 PRO 188 CYS 189 HIS 190 CYS 191 PHE 192 VAL 193 GLN 194 PHE 195 TYR 196 VAL 197 ALA 198 ASP 199 GLY 200 GLU 201 LEU 202 SER 203 CYS 204 GLN 205 MET 206 TYR 207 GLN 208 ARG 209 SER 210 ALA 211 ASP 212 MET 213 GLY 214 LEU 215 GLY 216 VAL 217 PRO 218 PHE 219 ASN 220 ILE 221 ALA 222 SER 223 TYR 224 SER 225 LEU 226 LEU 227 THR 228 ARG 229 MET 230 ILE 231 ALA 232 HIS 233 ILE 234 THR 235 SER 236 LEU 237 LYS 238 PRO 239 GLY 240 PHE 241 PHE 242 ILE 243 HIS 244 THR 245 ILE 246 GLY 247 ASP 248 ALA 249 HIS 250 VAL 251 TYR 252 LEU 253 THR 254 HIS 255 VAL 256 ASP 257 ALA 258 LEU 259 LYS 260 VAL 261 GLN 262 MET 263 GLU 264 ARG 265 LYS 266 PRO 267 ARG 268 PRO 269 PHE 270 PRO 271 LYS 272 LEU 273 LYS 274 ILE 275 LEU 276 ARG 277 ASN 278 VAL 279 GLU 280 ASN 281 ILE 282 ASP 283 ASP 284 PHE 285 ARG 286 ALA 287 GLU 288 ASP 289 PHE 290 GLU 291 LEU 292 ILE 293 ASN 294 TYR 295 LYS 296 PRO 297 TYR 298 PRO 299 LYS 300 ILE 301 SER 302 MET 303 PRO 304
Unit 3	TYR 18 VAL 19 ASN 20 GLN 21 GLU 22 GLU 23 LEU 24 ASN 25 TYR 26 LEU 27 ASN 28 GLN 29 LEU 30 LYS 31 ASP 32 ILE 33 ILE 34 ASP 35 HIS 36 GLY 37 VAL 38 ARG 39 LYS 40 ASN 41 ASP 42 ARG 43 THR 44 GLY 45 ILE 46 GLY 47 THR 48 LEU 49 SER 50 THR 51 PHE 52 GLY 53 THR 54 GLN 55 SER 56 ARG 57 TYR 58 CYS 59 LEU 60 ARG 61 ASP 62 ASP 63 ILE 64 PHE 65 PRO 66 LEU 67 LEU 68 THR 69 THR 70 LYS 71 ARG 72 VAL 73 PHE 74 TRP 75 ARG 76 GLY 77 VAL 78 VAL 79 GLU 80 GLU 81 LEU 82 LEU 83 TRP 84 PHE 85 ILE 86 SER 87 GLY 88 SER 89 THR 90 ASN 91 ALA 92 LYS 93 GLN 94 LEU 95 SER 96 GLU 97 LYS 98 ASN 99 VAL 100 ASN 101 ILE 102 TRP 103 ASP 104 GLY 105 ASN 106 SER 107 SER 108 ARG 109 GLU 110 PHE 111 LEU 112 ASP 113 SER 114 ARG 115 GLY 116 LEU 117 TYR 118 ASN 119 TYR 120 GLU 121 GLU 122 GLY 123 ASP 124 LEU 125 GLY 126 PRO 127 VAL 128 TYR 129 GLY 130 PHE 131 GLN 132 TRP 133 ARG 134 HIS 135 PHE 136 GLY 137 CYS 138 PRO 139 TYR 140 SER 141 SER 142 MET 143 THR 144 ALA 145 ASP 146 TYR 147 LYS 148 GLY 149 LYS 150 GLY 151 TYR 152 ASP 153 GLN 154 LEU 155 GLN 156 GLN 157 CYS 158 ILE 159 LYS 160 MET 161 ILE 162 ARG 163 GLU 164 GLU 165 PRO 166 GLU 167 SER 168 ARG 169 ARG 170 ILE 171 ILE 172 MET 173 THR 174 ALA 175 TRP 176 ASN 177 PRO 178 CYS 179 ASP 180 LEU 181 GLU 182 LYS 183 VAL 184 ALA 185 LEU 186 PRO 187 PRO 188 CYS 189 HIS 190 CYS 191 PHE 192 VAL 193 GLN 194 PHE 195 TYR 196 VAL 197 ALA 198 ASP 199 GLY 200 GLU 201 LEU 202 SER 203 CYS 204 GLN 205 MET 206 TYR 207 GLN 208 ARG 209 SER 210 ALA 211 ASP 212 MET 213 GLY 214 LEU 215 GLY 216 VAL 217 PRO 218 PHE 219 ASN 220 ILE 221 ALA 222 SER 223 TYR 224 SER 225 LEU 226 LEU 227 THR 228 ARG 229 MET 230 ILE 231 ALA 232 HIS 233 ILE 234 THR 235 SER 236 LEU 237 LYS 238 PRO 239 GLY 240 PHE 241 PHE 242 ILE 243 HIS 244 THR 245 ILE 246 GLY 247 ASP 248 ALA 249 HIS 250 VAL 251 TYR 252 LEU 253 THR 254 HIS 255 VAL 256 ASP 257 ALA 258 LEU 259 LYS 260 VAL 261 GLN 262 MET 263 GLU 264 ARG 265 LYS 266 PRO 267 ARG 268 PRO 269 PHE 270 PRO 271 LYS 272 LEU 273 LYS 274 ILE 275 LEU 276 ARG 277 ASN 278 VAL 279 GLU 280 ASN 281 ILE 282 ASP 283 ASP 284 PHE 285 ARG 286 ALA 287 GLU 288 ASP 289 PHE 290 GLU 291 LEU 292 ILE 293 ASN 294 TYR 295 LYS 296 PRO 297 TYR 298 PRO 299 LYS 300 ILE 301 SER 302 MET 303
Unit 4	TYR 18 VAL 19 ASN 20 GLN 21 GLU 22 GLU 23 LEU 24 ASN 25 TYR 26 LEU 27 ASN 28 GLN 29 LEU 30 LYS 31 ASP 32 ILE 33 ILE 34 ASP 35 HIS 36 GLY 37 VAL 38 ARG 39 LYS 40 ASN 41 ASP 42 ARG 43 THR 44 GLY 45 ILE 46 GLY 47 THR 48 LEU 49 SER 50 THR 51 PHE 52 GLY 53 THR 54 GLN 55 SER 56 ARG 57 TYR 58 CYS 59 LEU 60 ARG 61 ASP 62 ASP 63 ILE 64 PHE 65 PRO 66 LEU 67 LEU 68 THR 69 THR 70 LYS 71 ARG 72 VAL 73 PHE 74 TRP 75 ARG 76 GLY 77 VAL 78 VAL 79 GLU 80 GLU 81 LEU 82 LEU 83 TRP 84 PHE 85 ILE 86 SER 87 GLY 88 SER 89 THR 90 ASN 91 ALA 92 LYS 93 GLN 94 LEU 95 SER 96 GLU 97 LYS 98 ASN 99 VAL 100 ASN 101 ILE 102 TRP 103 ASP 104 GLY 105 ASN 106 SER 107 SER 108 ARG 109 GLU 110 PHE 111 LEU 112 ASP 113 SER 114 ARG 115 GLY 116 LEU 117 TYR 118 ASN 119 TYR 120 GLU 121 GLU 122 GLY 123 ASP 124 LEU 125 GLY 126 PRO 127 VAL 128 TYR 129 GLY 130 PHE 131 GLN 132 TRP 133 ARG 134 HIS 135 PHE 136 GLY 137 CYS 138 PRO 139 TYR 140 SER 141 SER 142 MET 143 THR 144 ALA 145 ASP 146 TYR 147 LYS 148 GLY 149 LYS 150 GLY 151 TYR 152 ASP 153 GLN 154 LEU 155 GLN 156 GLN 157 CYS 158 ILE 159 LYS 160 MET 161 ILE 162 ARG 163 GLU 164 GLU 165 PRO 166 GLU 167 SER 168 ARG 169 ARG 170 ILE 171 ILE 172 MET 173 THR 174 ALA 175 TRP 176 ASN 177 PRO 178 CYS 179 ASP 180 LEU 181 GLU 182 LYS 183 VAL 184 ALA 185 LEU 186 PRO 187 PRO 188 CYS 189 HIS 190 CYS 191 PHE 192 VAL 193 GLN 194 PHE 195 TYR 196 VAL 197 ALA 198 ASP 199 GLY 200 GLU 201 LEU 202 SER 203 CYS 204 GLN 205 MET 206 TYR 207 GLN 208 ARG 209 SER 210 ALA 211 ASP 212 MET 213 GLY 214 LEU 215 GLY 216 VAL 217 PRO 218 PHE 219 ASN 220 ILE 221 ALA 222 SER 223 TYR 224 SER 225 LEU 226 LEU 227 THR 228 ARG 229 MET 230 ILE 231 ALA 232 HIS 233 ILE 234 THR 235 SER 236 LEU 237 LYS 238 PRO 239 GLY 240 PHE 241 PHE 242 ILE 243 HIS 244 THR 245 ILE 246 GLY 247 ASP 248 ALA 249 HIS 250 VAL 251 TYR 252 LEU 253 THR 254 HIS 255 VAL 256 ASP 257 ALA 258 LEU 259 LYS 260 VAL 261 GLN 262 MET 263 GLU 264 ARG 265 LYS 266 PRO 267 ARG 268 PRO 269 PHE 270 PRO 271 LYS 272 LEU 273 LYS 274 ILE 275 LEU 276 ARG 277 ASN 278 VAL 279 GLU 280 ASN 281 ILE 282 ASP 283 ASP 284 PHE 285 ARG 286 ALA 287 GLU 288 ASP 289 PHE 290 GLU 291 LEU 292 ILE 293 ASN 294 TYR 295 LYS 296 PRO 297 TYR 298 PRO 299

Ligands

Unit 5	UMP 401 DTT 402 GOL 403 GOL 404 GOL 405 GOL 406
Unit 6	UMP 401
Unit 7	UMP 401 GOL 402
Unit 8	UMP 401 GOL 402 GOL 403 GOL 404