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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF CANDIDA ALBICANS RAI1 IN COMPLEX WITH P
Keywords RAI1, RNA, DECAPPING, MRNA 5'-PROCESSING, HYDROLASE-RNA COMP
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5BUD     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DECAPPING NUCLEASE RAI1  A 391 3218 0
2  Protein   DECAPPING NUCLEASE RAI1  B 387 3186 0
3  RNA    D 4 81 0
4  DNA/RNA    E 5 85 0
5  Ligand   DECAPPING NUCLEASE RAI1  A 3 0 3
6  Ligand   DECAPPING NUCLEASE RAI1  B 3 0 3
7 Water     1044 0 1044
total       1837 6570 1050
Proteins
Unit 1 HIS0 MET1 ALA2 LYS3 SER4 LEU5 PRO6 LEU7 ASN8 SER9 ARG10 SER11 LYS12 THR13 THR14 ALA15 LEU16 LYS17 GLN18 PRO19 ARG20 GLU21 LEU22 PHE23 SER24 TYR25 ALA26 ARG27 ASP28 ILE29 ASP30 GLY31 LYS32 TYR33 VAL34 TYR35 ASP36 ASP37 PRO38 GLU39 ASN40 SER41 LEU42 SER43 TYR44 TYR45 TYR46 LEU47 PRO48 ASP49 SER50 THR51 ILE52 ASP53 THR54 GLY55 ILE56 ASP57 LEU58 GLN59 GLY60 GLY61 TYR62 SER63 LYS64 PHE65 LYS66 LYS67 ILE68 PRO69 ASP70 GLU71 GLN72 ASN73 LEU74 ALA75 ASP76 PHE77 ASN78 SER79 LEU80 LEU81 LYS82 ALA83 ILE84 ILE85 LYS86 TYR87 GLU88 THR89 SER90 GLU91 GLY92 LYS93 LYS94 ILE95 SER96 SER97 ASP98 ILE99 ILE100 THR101 PHE102 ARG103 GLU104 ILE105 MET106 THR107 LYS108 ILE109 LEU110 SER111 LEU112 PRO113 TYR114 ASN115 LEU116 THR117 ASP118 PRO119 ILE120 ASP121 LEU122 TYR123 VAL124 VAL125 PRO126 PHE127 ASP128 GLY129 GLN130 LEU131 PHE132 ILE133 LYS134 SER135 ASP136 ASP137 GLU138 LEU139 ASP140 MET141 LYS142 ARG143 ARG144 LYS145 GLU146 GLN147 GLU148 VAL149 ARG150 MET151 LYS152 GLN153 THR154 ASN155 THR156 VAL157 GLU158 ARG159 TYR160 ASP161 TYR162 MET163 LYS164 ARG165 CYS166 GLU167 TYR168 VAL169 GLY170 TYR171 LYS172 PHE173 GLU174 THR175 ILE176 ALA177 THR178 ILE179 PRO180 LYS181 PRO182 TRP183 SER184 GLN185 VAL186 SER187 ARG188 SER189 GLN190 ILE191 GLU192 ASN193 ARG194 ASN195 LYS196 LYS197 VAL198 VAL199 ASN200 ASN201 TYR202 GLU203 GLN204 TYR205 LEU206 SER207 VAL208 ILE209 ARG210 THR211 GLY212 ILE213 GLY214 ASN215 VAL216 LYS217 LEU218 VAL219 LEU220 ALA221 GLY222 GLU223 ILE224 ASP225 CYS226 CYS227 TRP228 ASP229 TYR230 LEU231 PRO232 ASP233 GLU234 GLN235 ASN236 LYS237 LYS238 LEU239 ASN240 HIS241 TYR242 VAL243 GLU244 LEU245 LYS246 THR247 SER248 ARG249 ILE250 ILE251 GLU252 ASN253 ASN254 SER255 GLN256 VAL257 VAL258 SER259 PHE260 GLU261 GLN262 LYS263 LEU264 PHE265 LYS266 ALA267 TRP268 CYS269 GLN270 CYS271 PHE272 LEU273 MET274 GLY275 VAL276 THR277 LYS278 ILE279 ILE280 TYR281 GLY282 PHE283 ARG284 ASP285 ASN286 ASN287 LEU288 ILE289 LEU290 LYS291 ASN292 VAL293 GLU294 LEU295 PHE296 ASN297 THR298 GLU299 GLU300 ILE301 PRO302 ILE303 LEU304 ILE305 LYS306 ASN307 ASN308 PRO309 LEU310 THR311 ASN312 ALA313 ALA314 THR315 GLU316 LYS317 LYS318 ILE319 ASN320 CYS321 THR322 ASN323 ALA324 LEU325 LYS326 TRP327 TYR328 GLY329 ALA330 VAL331 VAL332 ASP333 TRP334 LEU335 ASN336 THR337 THR338 VAL339 ASP340 LYS341 LYS342 ASP343 GLU344 ILE345 LYS346 SER347 TYR348 ARG349 LEU350 LYS351 TYR352 ASP353 PRO354 VAL355 ARG356 LYS357 SER358 PHE359 THR360 LEU361 SER362 GLU363 THR364 ASP365 SER366 GLU367 THR368 ASN369 GLU370 LYS371 LEU372 ARG373 ASN374 GLY375 GLN376 LEU377 LEU378 THR379 PRO380 GLU381 PHE382 THR383 GLU384 TRP385 ARG386 GLN387 SER388 LEU389 LYS390
Unit 2 MET1 ALA2 LYS3 SER4 LEU5 PRO6 LEU7 ASN8 SER9 ARG10 SER11 LYS12 THR13 THR14 LYS17 GLN18 PRO19 ARG20 GLU21 LEU22 PHE23 SER24 TYR25 ALA26 ARG27 ASP28 ILE29 ASP30 GLY31 LYS32 TYR33 VAL34 TYR35 ASP36 ASP37 PRO38 GLU39 ASN40 SER41 LEU42 SER43 TYR44 TYR45 TYR46 LEU47 PRO48 ASP49 SER50 THR51 ILE52 ASP53 THR54 GLY55 ILE56 ASP57 LEU58 GLN59 GLY60 GLY61 TYR62 SER63 LYS64 PHE65 LYS66 LYS67 ILE68 PRO69 ASP70 GLU71 GLN72 ASN73 LEU74 ALA75 ASP76 PHE77 ASN78 SER79 LEU80 LEU81 LYS82 ALA83 ILE84 ILE85 LYS86 TYR87 GLU88 THR89 SER90 GLU91 GLY92 LYS93 LYS94 ILE95 SER96 SER97 ASP98 ILE99 ILE100 THR101 PHE102 ARG103 GLU104 ILE105 MET106 THR107 LYS108 ILE109 LEU110 SER111 LEU112 PRO113 TYR114 ASN115 LEU116 THR117 ASP118 PRO119 ILE120 ASP121 LEU122 TYR123 VAL124 VAL125 PRO126 PHE127 ASP128 GLY129 GLN130 LEU131 PHE132 ILE133 LYS134 SER135 ASP136 ASP137 GLU138 LEU139 ASP140 MET141 LYS142 ARG143 ARG144 LYS145 GLU146 GLN147 GLU148 VAL149 ARG150 MET151 LYS152 GLN153 THR154 ASN155 THR156 VAL157 GLU158 ARG159 TYR160 ASP161 TYR162 MET163 LYS164 ARG165 CYS166 GLU167 TYR168 VAL169 GLY170 TYR171 LYS172 PHE173 GLU174 THR175 ILE176 ALA177 THR178 ILE179 PRO180 LYS181 PRO182 TRP183 SER184 GLN185 VAL186 SER187 ARG188 SER189 GLN190 ILE191 GLU192 ASN193 ARG194 ASN195 LYS196 LYS197 VAL198 VAL199 ASN200 ASN201 TYR202 GLU203 GLN204 TYR205 LEU206 SER207 VAL208 ILE209 ARG210 THR211 GLY212 ILE213 GLY214 ASN215 VAL216 LYS217 LEU218 VAL219 LEU220 ALA221 GLY222 GLU223 ILE224 ASP225 CYS226 CYS227 TRP228 ASP229 TYR230 LEU231 PRO232 ASP233 GLU234 GLN235 ASN236 LYS237 LYS238 LEU239 ASN240 HIS241 TYR242 VAL243 GLU244 LEU245 LYS246 THR247 SER248 ARG249 ILE250 ILE251 GLU252 ASN253 ASN254 SER255 GLN256 VAL257 VAL258 SER259 PHE260 GLU261 GLN262 LYS263 LEU264 PHE265 LYS266 ALA267 TRP268 CYS269 GLN270 CYS271 PHE272 LEU273 MET274 GLY275 VAL276 THR277 LYS278 ILE279 ILE280 TYR281 GLY282 PHE283 ARG284 ASP285 ASN286 ASN287 LEU288 ILE289 LEU290 LYS291 ASN292 VAL293 GLU294 LEU295 PHE296 ASN297 THR298 GLU299 GLU300 ILE301 PRO302 ILE303 LEU304 ILE305 LYS306 ASN307 ASN308 PRO309 LEU310 THR311 ASN312 ALA313 ALA314 THR315 GLU316 LYS317 LYS318 ILE319 ASN320 CYS321 THR322 ASN323 ALA324 LEU325 LYS326 TRP327 TYR328 GLY329 ALA330 VAL331 VAL332 ASP333 TRP334 LEU335 ASN336 THR337 THR338 VAL339 ASP340 LYS341 LYS342 ASP343 GLU344 ILE345 LYS346 SER347 TYR348 ARG349 LEU350 LYS351 TYR352 ASP353 PRO354 VAL355 ARG356 LYS357 SER358 PHE359 THR360 LEU361 SER362 GLU363 THR364 ASP365 SER366 GLU367 THR368 ASN369 GLU370 LYS371 LEU372 ARG373 ASN374 GLY375 GLN376 LEU377 LEU378 THR379 PRO380 GLU381 PHE382 THR383 GLU384 TRP385 ARG386 GLN387 SER388 LEU389
Nucleic acids
Unit 3 U2 U3 U4 U5
Unit 4 U2 U3 U4 U5 U6
Ligands
Unit 5 MN401 MN402 MN403
Unit 6 MN401 MN402 MN403
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany