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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF SXN101959, A CLOSTRIDIUM BOTULINUM NEUR TYPE D DERIVATIVE AND TARGETED SECRETION INHIBITOR
Keywords BOTULINUM NEUROTOXIN, TARGETED SECRETION INHIBITORS, ENDOPEP TYPE D, PROTEIN ENGINEERING, HYDROLASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5BQM     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   BOTULINUM NEUROTOXIN TYPE D  A 442 3555 0
2  Protein   SOMATOLIBERIN,BOTULINUM NEUROTOXIN TYPE D  B 387 3077 0
3  Protein   BOTULINUM NEUROTOXIN TYPE D  C 443 3550 0
4  Protein   SOMATOLIBERIN,BOTULINUM NEUROTOXIN TYPE D  D 388 3067 0
5  Ligand   BOTULINUM NEUROTOXIN TYPE D  A 1 0 1
6  Ligand   BOTULINUM NEUROTOXIN TYPE D  C 1 0 1
7 Water     6 0 7
total       1668 13249 9
Proteins
Unit 1 THR2 TRP3 PRO4 VAL5 LYS6 ASP7 PHE8 ASN9 TYR10 SER11 ASP12 PRO13 VAL14 ASN15 ASP16 ASN17 ASP18 ILE19 LEU20 TYR21 LEU22 ARG23 ILE24 PRO25 GLN26 ASN27 LYS28 LEU29 ILE30 THR31 THR32 PRO33 VAL34 LYS35 ALA36 PHE37 MET38 ILE39 THR40 GLN41 ASN42 ILE43 TRP44 VAL45 ILE46 PRO47 GLU48 ARG49 PHE50 SER51 SER52 ASP53 THR54 ASN55 PRO56 SER57 LEU58 SER59 LYS60 PRO61 PRO62 ARG63 PRO64 THR65 SER66 LYS67 TYR68 GLN69 SER70 TYR71 TYR72 ASP73 PRO74 SER75 TYR76 LEU77 SER78 THR79 ASP80 GLU81 GLN82 LYS83 ASP84 THR85 PHE86 LEU87 LYS88 GLY89 ILE90 ILE91 LYS92 LEU93 PHE94 LYS95 ARG96 ILE97 ASN98 GLU99 ARG100 ASP101 ILE102 GLY103 LYS104 LYS105 LEU106 ILE107 ASN108 TYR109 LEU110 VAL111 VAL112 GLY113 SER114 PRO115 PHE116 MET117 GLY118 ASP119 SER120 SER121 THR122 PRO123 GLU124 ASP125 THR126 PHE127 ASP128 PHE129 THR130 ARG131 HIS132 THR133 THR134 ASN135 ILE136 ALA137 VAL138 GLU139 LYS140 PHE141 GLU142 ASN143 GLY144 SER145 TRP146 LYS147 VAL148 THR149 ASN150 ILE151 ILE152 THR153 PRO154 SER155 VAL156 LEU157 ILE158 PHE159 GLY160 PRO161 LEU162 PRO163 ASN164 ILE165 LEU166 ASP167 TYR168 THR169 ALA170 SER171 LEU172 THR173 LEU174 GLN175 GLY176 GLN177 GLN178 SER179 ASN180 PRO181 SER182 PHE183 GLU184 GLY185 PHE186 GLY187 THR188 LEU189 SER190 ILE191 LEU192 LYS193 VAL194 ALA195 PRO196 GLU197 PHE198 LEU199 LEU200 THR201 PHE202 SER203 ASP204 VAL205 THR206 SER207 ASN208 GLN209 SER210 SER211 ALA212 VAL213 LEU214 GLY215 LYS216 SER217 ILE218 PHE219 CYS220 MET221 ASP222 PRO223 VAL224 ILE225 ALA226 LEU227 MET228 HIS229 GLU230 LEU231 THR232 HIS233 SER234 LEU235 HIS236 GLN237 LEU238 TYR239 GLY240 ILE241 ASN242 ILE243 PRO244 SER245 ASP246 LYS247 ARG248 ILE249 ARG250 PRO251 GLN252 VAL253 SER254 GLU255 GLY256 PHE257 PHE258 SER259 GLN260 ASP261 GLY262 PRO263 ASN264 VAL265 GLN266 PHE267 GLU268 GLU269 LEU270 TYR271 THR272 PHE273 GLY274 GLY275 LEU276 ASP277 VAL278 GLU279 ILE280 ILE281 PRO282 GLN283 ILE284 GLU285 ARG286 SER287 GLN288 LEU289 ARG290 GLU291 LYS292 ALA293 LEU294 GLY295 HIS296 TYR297 LYS298 ASP299 ILE300 ALA301 LYS302 ARG303 LEU304 ASN305 ASN306 ILE307 ASN308 LYS309 THR310 ILE311 PRO312 SER313 SER314 TRP315 ILE316 SER317 ASN318 ILE319 ASP320 LYS321 TYR322 LYS323 LYS324 ILE325 PHE326 SER327 GLU328 LYS329 TYR330 ASN331 PHE332 ASP333 LYS334 ASP335 ASN336 THR337 GLY338 ASN339 PHE340 VAL341 VAL342 ASN343 ILE344 ASP345 LYS346 PHE347 ASN348 SER349 LEU350 TYR351 SER352 ASP353 LEU354 THR355 ASN356 VAL357 MET358 SER359 GLU360 VAL361 VAL362 TYR363 SER364 SER365 GLN366 TYR367 ASN368 VAL369 LYS370 ASN371 ARG372 THR373 HIS374 TYR375 PHE376 SER377 ARG378 HIS379 TYR380 LEU381 PRO382 VAL383 PHE384 ALA385 ASN386 ILE387 LEU388 ASP389 ASP390 ASN391 ILE392 TYR393 THR394 ILE395 ARG396 ASP397 GLY398 PHE399 ASN400 LEU401 THR402 ASN403 LYS404 GLY405 PHE406 ASN407 ILE408 GLU409 ASN410 SER411 GLY412 GLN413 ASN414 ILE415 GLU416 ARG417 ASN418 PRO419 ALA420 LEU421 GLN422 LYS423 LEU424 SER425 SER426 GLU427 SER428 VAL429 VAL430 ASP431 LEU432 PHE433 THR434 LYS435 VAL436 CYS437 VAL438 ASP439 GLY440 ILE441 ILE442 THR443
Unit 2 GLY509 SER510 ALA511 LEU512 VAL513 LEU514 GLN515 CYS516 ILE517 LYS518 VAL519 LYS520 ASN521 ASN522 ARG523 LEU524 PRO525 TYR526 VAL527 ALA528 ASP529 LYS530 ASP531 SER532 ILE533 SER534 GLN535 GLU536 ILE537 PHE538 GLU539 ASN540 LYS541 ILE542 ILE543 THR544 ASP545 GLU546 THR547 ASN548 VAL549 GLN550 VAL567 PRO568 ILE569 ASN570 PRO571 GLU572 ILE573 VAL574 ASP575 PRO576 LEU577 LEU578 PRO579 ASN580 VAL581 ASN582 MET583 GLU584 PRO585 LEU586 ASN587 LEU588 PRO589 GLY590 GLU591 GLU592 ILE593 VAL594 PHE595 TYR596 ASP597 ASP598 ILE599 THR600 LYS601 TYR602 VAL603 ASP604 TYR605 LEU606 ASN607 SER608 TYR609 TYR610 TYR611 LEU612 GLU613 SER614 GLN615 LYS616 LEU617 SER618 ASN619 ASN620 VAL621 GLU622 ASN623 ILE624 THR625 LEU626 THR627 THR628 SER629 VAL630 GLU631 GLU632 ALA633 LEU634 GLY635 TYR636 SER637 ASN638 LYS639 ILE640 TYR641 THR642 PHE643 LEU644 PRO645 SER646 LEU647 ALA648 GLU649 LYS650 VAL651 ASN652 LYS653 GLY654 VAL655 GLN656 ALA657 GLY658 LEU659 PHE660 LEU661 ASN662 TRP663 ALA664 ASN665 GLU666 VAL667 VAL668 GLU669 ASP670 PHE671 THR672 THR673 ASN674 ILE675 MET676 LYS677 LYS678 ASP679 THR680 LEU681 ASP682 LYS683 ILE684 SER685 ASP686 VAL687 SER688 VAL689 ILE690 ILE691 PRO692 TYR693 ILE694 GLY695 PRO696 ALA697 LEU698 ASN699 ILE700 GLY701 ASN702 SER703 ALA704 LEU705 ARG706 GLY707 ASN708 PHE709 ASN710 GLN711 ALA712 PHE713 ALA714 THR715 ALA716 GLY717 VAL718 ALA719 PHE720 LEU721 LEU722 GLU723 GLY724 PHE725 PRO726 GLU727 PHE728 THR729 ILE730 PRO731 ALA732 LEU733 GLY734 VAL735 PHE736 THR737 PHE738 TYR739 SER740 SER741 ILE742 GLN743 GLU744 ARG745 GLU746 LYS747 ILE748 ILE749 LYS750 THR751 ILE752 GLU753 ASN754 CYS755 LEU756 GLU757 GLN758 ARG759 VAL760 LYS761 ARG762 TRP763 LYS764 ASP765 SER766 TYR767 GLN768 TRP769 MET770 VAL771 SER772 ASN773 TRP774 LEU775 SER776 ARG777 ILE778 THR779 THR780 GLN781 PHE782 ASN783 HIS784 ILE785 ASN786 TYR787 GLN788 MET789 TYR790 ASP791 SER792 LEU793 SER794 TYR795 GLN796 ALA797 ASP798 ALA799 ILE800 LYS801 ALA802 LYS803 ILE804 ASP805 LEU806 GLU807 TYR808 LYS809 LYS810 TYR811 SER812 GLY813 SER814 ASP815 LYS816 GLU817 ASN818 ILE819 LYS820 SER821 GLN822 VAL823 GLU824 ASN825 LEU826 LYS827 ASN828 SER829 LEU830 ASP831 VAL832 LYS833 ILE834 SER835 GLU836 ALA837 MET838 ASN839 ASN840 ILE841 ASN842 LYS843 PHE844 ILE845 ARG846 GLU847 CYS848 SER849 VAL850 THR851 TYR852 LEU853 PHE854 LYS855 ASN856 MET857 LEU858 PRO859 LYS860 VAL861 ILE862 ASP863 GLU864 LEU865 ASN866 LYS867 PHE868 ASP869 LEU870 ARG871 THR872 LYS873 THR874 GLU875 LEU876 ILE877 ASN878 LEU879 ILE880 ASP881 SER882 HIS883 ASN884 ILE885 ILE886 LEU887 VAL888 GLY889 GLU890 VAL891 ASP892 ARG893 LEU894 LYS895 ALA896 LYS897 VAL898 ASN899 GLU900 SER901 PHE902 GLU903 ASN904 THR905 MET906 PRO907 PHE908 ASN909 ILE910 PHE911
Unit 3 THR2 TRP3 PRO4 VAL5 LYS6 ASP7 PHE8 ASN9 TYR10 SER11 ASP12 PRO13 VAL14 ASN15 ASP16 ASN17 ASP18 ILE19 LEU20 TYR21 LEU22 ARG23 ILE24 PRO25 GLN26 ASN27 LYS28 LEU29 ILE30 THR31 THR32 PRO33 VAL34 LYS35 ALA36 PHE37 MET38 ILE39 THR40 GLN41 ASN42 ILE43 TRP44 VAL45 ILE46 PRO47 GLU48 ARG49 PHE50 SER51 SER52 ASP53 THR54 ASN55 PRO56 SER57 LEU58 SER59 LYS60 PRO61 PRO62 ARG63 PRO64 THR65 SER66 LYS67 TYR68 GLN69 SER70 TYR71 TYR72 ASP73 PRO74 SER75 TYR76 LEU77 SER78 THR79 ASP80 GLU81 GLN82 LYS83 ASP84 THR85 PHE86 LEU87 LYS88 GLY89 ILE90 ILE91 LYS92 LEU93 PHE94 LYS95 ARG96 ILE97 ASN98 GLU99 ARG100 ASP101 ILE102 GLY103 LYS104 LYS105 LEU106 ILE107 ASN108 TYR109 LEU110 VAL111 VAL112 GLY113 SER114 PRO115 PHE116 MET117 GLY118 ASP119 SER120 SER121 THR122 PRO123 GLU124 ASP125 THR126 PHE127 ASP128 PHE129 THR130 ARG131 HIS132 THR133 THR134 ASN135 ILE136 ALA137 VAL138 GLU139 LYS140 PHE141 GLU142 ASN143 GLY144 SER145 TRP146 LYS147 VAL148 THR149 ASN150 ILE151 ILE152 THR153 PRO154 SER155 VAL156 LEU157 ILE158 PHE159 GLY160 PRO161 LEU162 PRO163 ASN164 ILE165 LEU166 ASP167 TYR168 THR169 ALA170 SER171 LEU172 THR173 LEU174 GLN175 GLY176 GLN177 GLN178 SER179 ASN180 PRO181 SER182 PHE183 GLU184 GLY185 PHE186 GLY187 THR188 LEU189 SER190 ILE191 LEU192 LYS193 VAL194 ALA195 PRO196 GLU197 PHE198 LEU199 LEU200 THR201 PHE202 SER203 ASP204 VAL205 THR206 SER207 ASN208 GLN209 SER210 SER211 ALA212 VAL213 LEU214 GLY215 LYS216 SER217 ILE218 PHE219 CYS220 MET221 ASP222 PRO223 VAL224 ILE225 ALA226 LEU227 MET228 HIS229 GLU230 LEU231 THR232 HIS233 SER234 LEU235 HIS236 GLN237 LEU238 TYR239 GLY240 ILE241 ASN242 ILE243 PRO244 SER245 ASP246 LYS247 ARG248 ILE249 ARG250 PRO251 GLN252 VAL253 SER254 GLU255 GLY256 PHE257 PHE258 SER259 GLN260 ASP261 GLY262 PRO263 ASN264 VAL265 GLN266 PHE267 GLU268 GLU269 LEU270 TYR271 THR272 PHE273 GLY274 GLY275 LEU276 ASP277 VAL278 GLU279 ILE280 ILE281 PRO282 GLN283 ILE284 GLU285 ARG286 SER287 GLN288 LEU289 ARG290 GLU291 LYS292 ALA293 LEU294 GLY295 HIS296 TYR297 LYS298 ASP299 ILE300 ALA301 LYS302 ARG303 LEU304 ASN305 ASN306 ILE307 ASN308 LYS309 THR310 ILE311 PRO312 SER313 SER314 TRP315 ILE316 SER317 ASN318 ILE319 ASP320 LYS321 TYR322 LYS323 LYS324 ILE325 PHE326 SER327 GLU328 LYS329 TYR330 ASN331 PHE332 ASP333 LYS334 ASP335 ASN336 THR337 GLY338 ASN339 PHE340 VAL341 VAL342 ASN343 ILE344 ASP345 LYS346 PHE347 ASN348 SER349 LEU350 TYR351 SER352 ASP353 LEU354 THR355 ASN356 VAL357 MET358 SER359 GLU360 VAL361 VAL362 TYR363 SER364 SER365 GLN366 TYR367 ASN368 VAL369 LYS370 ASN371 ARG372 THR373 HIS374 TYR375 PHE376 SER377 ARG378 HIS379 TYR380 LEU381 PRO382 VAL383 PHE384 ALA385 ASN386 ILE387 LEU388 ASP389 ASP390 ASN391 ILE392 TYR393 THR394 ILE395 ARG396 ASP397 GLY398 PHE399 ASN400 LEU401 THR402 ASN403 LYS404 GLY405 PHE406 ASN407 ILE408 GLU409 ASN410 SER411 GLY412 GLN413 ASN414 ILE415 GLU416 ARG417 ASN418 PRO419 ALA420 LEU421 GLN422 LYS423 LEU424 SER425 SER426 GLU427 SER428 VAL429 VAL430 ASP431 LEU432 PHE433 THR434 LYS435 VAL436 CYS437 VAL438 ASP439 GLY440 ILE441 ILE442 THR443 SER444
Unit 4 GLY507 GLY508 GLY509 SER510 ALA511 LEU512 VAL513 LEU514 GLN515 CYS516 ILE517 LYS518 VAL519 LYS520 ASN521 ASN522 ARG523 LEU524 PRO525 TYR526 VAL527 ALA528 ASP529 LYS530 ASP531 SER532 ILE533 SER534 GLN535 GLU536 ILE537 PHE538 GLU539 ASN540 LYS541 ILE542 ILE543 THR544 ASP545 GLU546 THR547 ASN548 VAL549 VAL567 PRO568 ILE569 ASN570 PRO571 GLU572 ILE573 VAL574 ASP575 PRO576 LEU577 LEU578 PRO579 ASN580 VAL581 ASN582 MET583 GLU584 PRO585 LEU586 ASN587 LEU588 PRO589 GLY590 GLU591 GLU592 ILE593 VAL594 PHE595 TYR596 ASP597 ASP598 ILE599 THR600 LYS601 TYR602 VAL603 ASP604 TYR605 LEU606 ASN607 SER608 TYR609 TYR610 TYR611 LEU612 GLU613 SER614 GLN615 LYS616 LEU617 SER618 ASN619 ASN620 VAL621 GLU622 ASN623 ILE624 THR625 LEU626 THR627 THR628 SER629 VAL630 GLU631 GLU632 ALA633 LEU634 GLY635 TYR636 SER637 ASN638 LYS639 ILE640 TYR641 THR642 PHE643 LEU644 PRO645 SER646 LEU647 ALA648 GLU649 LYS650 VAL651 ASN652 LYS653 GLY654 VAL655 GLN656 ALA657 GLY658 LEU659 PHE660 LEU661 ASN662 TRP663 ALA664 ASN665 GLU666 VAL667 VAL668 GLU669 ASP670 PHE671 THR672 THR673 ASN674 ILE675 MET676 LYS677 LYS678 ASP679 THR680 LEU681 ASP682 LYS683 ILE684 SER685 ASP686 VAL687 SER688 VAL689 ILE690 ILE691 PRO692 TYR693 ILE694 GLY695 PRO696 ALA697 LEU698 ASN699 ILE700 GLY701 ASN702 SER703 ALA704 LEU705 ARG706 GLY707 ASN708 PHE709 ASN710 GLN711 ALA712 PHE713 ALA714 THR715 ALA716 GLY717 VAL718 ALA719 PHE720 LEU721 LEU722 GLU723 GLY724 PHE725 PRO726 GLU727 PHE728 THR729 ILE730 PRO731 ALA732 LEU733 GLY734 VAL735 PHE736 THR737 PHE738 TYR739 SER740 SER741 ILE742 GLN743 GLU744 ARG745 GLU746 LYS747 ILE748 ILE749 LYS750 THR751 ILE752 GLU753 ASN754 CYS755 LEU756 GLU757 GLN758 ARG759 VAL760 LYS761 ARG762 TRP763 LYS764 ASP765 SER766 TYR767 GLN768 TRP769 MET770 VAL771 SER772 ASN773 TRP774 LEU775 SER776 ARG777 ILE778 THR779 THR780 GLN781 PHE782 ASN783 HIS784 ILE785 ASN786 TYR787 GLN788 MET789 TYR790 ASP791 SER792 LEU793 SER794 TYR795 GLN796 ALA797 ASP798 ALA799 ILE800 LYS801 ALA802 LYS803 ILE804 ASP805 LEU806 GLU807 TYR808 LYS809 LYS810 TYR811 SER812 GLY813 SER814 ASP815 LYS816 GLU817 ASN818 ILE819 LYS820 SER821 GLN822 VAL823 GLU824 ASN825 LEU826 LYS827 ASN828 SER829 LEU830 ASP831 VAL832 LYS833 ILE834 SER835 GLU836 ALA837 MET838 ASN839 ASN840 ILE841 ASN842 LYS843 PHE844 ILE845 ARG846 GLU847 CYS848 SER849 VAL850 THR851 TYR852 LEU853 PHE854 LYS855 ASN856 MET857 LEU858 PRO859 LYS860 VAL861 ILE862 ASP863 GLU864 LEU865 ASN866 LYS867 PHE868 ASP869 LEU870 ARG871 THR872 LYS873 THR874 GLU875 LEU876 ILE877 ASN878 LEU879 ILE880 ASP881 SER882 HIS883 ASN884 ILE885 ILE886 LEU887 VAL888 GLY889 GLU890 VAL891 ASP892 ARG893 LEU894 LYS895 ALA896 LYS897 VAL898 ASN899 GLU900 SER901 PHE902 GLU903 ASN904 THR905 MET906 PRO907 PHE908 ASN909 ILE910 PHE911
Ligands
Unit 5 ZN1000
Unit 6 ZN1000
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany