Jena Library of Biological Macromolecules - Home Page [Image Library Home] [Image Library Entry]

Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF FRANCISELLA NOVICIDA CAS9 IN COMPLEX WI AND TARGET DNA (TGG PAM)
Keywords CRISPR-CAS9, GENOME ENGINEERING, HYDROLASE-RNA-DNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5B2O     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   CRISPR-ASSOCIATED ENDONUCLEASE CAS9  A 1455 11677 0
2  RNA    B 94 1991 0
3  Other macromolecule   TARGET DNA  C 30 595 0
4  Other macromolecule   DNA (5'-D(*TP*GP*GP*TP*AP*TP*CP*GP*G)-3')  D 9 185 0
5  Ligand   CRISPR-ASSOCIATED ENDONUCLEASE CAS9  A 28 0 67
6  Ligand   GUIDE RNA  B 20 0 53
7  Ligand   TARGET DNA  C 1 0 4
8 Water     1031 0 1031
total       2668 14448 1155
Proteins
Unit 1 MET1 ASN2 PHE3 LYS4 ILE5 LEU6 PRO7 ILE8 ALA9 ILE10 ASP11 LEU12 GLY13 VAL14 LYS15 ASN16 THR17 GLY18 VAL19 PHE20 SER21 ALA22 PHE23 TYR24 GLN25 LYS26 GLY27 THR28 SER29 LEU30 GLU31 ARG32 LEU33 ASP34 ASN35 LYS36 ASN37 GLY38 LYS39 VAL40 TYR41 GLU42 LEU43 SER44 LYS45 ASP46 SER47 TYR48 THR49 LEU50 LEU51 MET52 ASN53 ASN54 ARG55 THR56 ALA57 ARG58 ARG59 HIS60 GLN61 ARG62 ARG63 GLY64 ILE65 ASP66 ARG67 LYS68 GLN69 LEU70 VAL71 LYS72 ARG73 LEU74 PHE75 LYS76 LEU77 ILE78 TRP79 THR80 GLU81 GLN82 LEU83 ASN84 LEU85 GLU86 TRP87 ASP88 LYS89 ASP90 THR91 GLN92 GLN93 ALA94 ILE95 SER96 PHE97 LEU98 PHE99 ASN100 ARG101 ARG102 GLY103 PHE104 SER105 PHE106 ILE107 THR108 ASP109 GLY110 TYR111 SER112 VAL123 LYS124 ALA125 ILE126 LEU127 MET128 ASP129 ILE130 PHE131 ASP132 ASP133 TYR134 ASN135 GLY136 GLU137 ASP138 ASP141 SER142 TYR143 LEU144 LYS145 LEU146 ALA147 THR148 GLU149 GLN150 GLU151 SER152 LYS153 ILE154 SER155 GLU156 ILE157 TYR158 ASN159 LYS160 LEU161 MET162 GLN163 LYS164 ILE165 LEU166 GLU167 PHE168 LYS169 LEU170 MET171 LYS172 LEU173 CYS174 THR175 ASP176 ILE177 LYS178 ASP179 ASP180 THR186 LEU187 LYS188 GLU189 ILE190 THR191 SER192 TYR193 GLU194 PHE195 GLU196 LEU197 LEU198 ALA199 ASP200 TYR201 LEU202 ALA203 ASN204 TYR205 SER206 GLU207 SER208 LEU209 LYS210 THR211 GLN212 LYS213 PHE214 TYR234 ASN235 ILE236 GLN237 GLU238 PHE239 LEU240 LYS241 ARG242 HIS243 ALA244 THR245 ILE246 ASN247 ASP248 ARG249 ILE250 LEU251 ASP252 THR253 LEU254 LEU255 THR256 ASP257 ASP258 LEU259 ASP260 ILE261 TRP262 ASN263 PHE264 ASN265 PHE266 GLU267 LEU291 HIS292 HIS293 PHE294 VAL295 PHE296 ALA297 VAL298 ASN299 LYS300 ILE301 LYS302 SER303 GLU304 MET305 ALA306 SER307 GLY308 GLY309 ARG310 HIS311 ARG312 SER313 GLN314 TYR315 PHE316 GLN317 GLU318 ILE319 THR320 ASN321 VAL322 LEU323 ASP324 GLU325 ASN326 ASN327 HIS328 GLN329 GLU330 GLY331 TYR332 LEU333 LYS334 ASN335 PHE336 CYS337 GLU338 ASN339 LEU340 HIS341 ASN342 LYS343 LYS344 TYR345 SER346 ASN347 LEU348 SER349 VAL350 LYS351 ASN352 LEU353 VAL354 ASN355 LEU356 ILE357 GLY358 ASN359 LEU360 SER361 ASN362 LEU363 GLU364 LEU365 LYS366 PRO367 LEU368 ARG369 LYS370 TYR371 PHE372 ASN373 ASP374 LYS375 ILE376 HIS377 ALA378 LYS379 ALA380 ASP381 HIS382 TRP383 ASP384 GLU385 GLN386 LYS387 PHE388 THR389 GLU390 THR391 TYR392 CYS393 HIS394 TRP395 ILE396 LEU397 GLY398 GLU399 TRP400 ARG401 VAL402 GLY403 VAL404 LYS405 ASP406 GLN407 ASP408 LYS409 LYS410 ASP411 GLY412 ALA413 LYS414 TYR415 SER416 TYR417 LYS418 ASP419 LEU420 CYS421 ASN422 GLU423 LEU424 LYS425 GLN426 LYS427 VAL428 THR429 LYS430 ALA431 GLY432 LEU433 VAL434 ASP435 PHE436 LEU437 LEU438 GLU439 LEU440 ASP441 PRO442 CYS443 ARG444 THR445 ILE446 PRO447 PRO448 TYR449 LEU450 ASP451 ASN452 ASN453 ASN454 ARG455 LYS456 PRO457 PRO458 LYS459 CYS460 GLN461 SER462 LEU463 ILE464 LEU465 ASN466 PRO467 LYS468 PHE469 LEU470 ASP471 ASN472 GLN473 TYR474 PRO475 ASN476 TRP477 GLN478 GLN479 TYR480 LEU481 GLN482 GLU483 LEU484 LYS485 LYS486 LEU487 GLN488 SER489 ILE490 GLN491 ASN492 TYR493 LEU494 ASP495 SER496 PHE497 GLU498 THR499 ASP500 LEU501 LYS502 VAL503 LEU504 LYS505 SER506 SER507 LYS508 ASP509 GLN510 PRO511 TYR512 PHE513 VAL514 GLU515 TYR516 LYS517 SER518 SER519 ASN520 GLN521 GLN522 ILE523 ALA524 SER525 GLY526 GLN527 ARG528 ASP529 TYR530 LYS531 ASP532 LEU533 ASP534 ALA535 ARG536 ILE537 LEU538 GLN539 PHE540 ILE541 PHE542 ASP543 ARG544 VAL545 LYS546 ALA547 SER548 ASP549 GLU550 LEU551 LEU552 LEU553 ASN554 GLU555 ILE556 TYR557 PHE558 GLN559 ALA560 LYS561 LYS562 LEU563 LYS564 GLN565 GLU575 SER576 SER577 LYS578 LYS579 LEU580 ASP581 GLU582 VAL583 ILE584 ALA585 ASN586 SER587 GLN588 LEU589 SER590 GLN591 ILE592 LEU593 LYS594 SER595 GLN596 HIS597 THR598 ASN599 GLY600 ILE601 PHE602 GLU603 GLN604 GLY605 THR606 PHE607 LEU608 HIS609 LEU610 VAL611 CYS612 LYS613 TYR614 TYR615 LYS616 GLN617 ARG618 GLN619 ARG620 ALA621 ARG622 ASP623 SER624 ARG625 LEU626 TYR627 ILE628 MET629 PRO630 GLU631 TYR632 ARG633 TYR634 ASP635 LYS636 LYS637 LEU638 HIS639 LYS640 TYR641 ASN642 ASN643 THR644 GLY645 ARG646 PHE647 ASP648 ASP649 ASP650 ASN651 GLN652 LEU653 LEU654 THR655 TYR656 CYS657 ASN658 HIS659 LYS660 PRO661 ARG662 GLN663 LYS664 ARG665 TYR666 GLN667 LEU668 LEU669 ASN670 ASP671 LEU672 ALA673 GLY674 VAL675 LEU676 GLN677 VAL678 SER679 PRO680 ASN681 PHE682 LEU683 LYS684 ASP685 LYS686 ILE687 GLY688 SER689 ASP690 ASP691 ASP692 LEU693 PHE694 ILE695 SER696 LYS697 TRP698 LEU699 VAL700 GLU701 HIS702 ILE703 ARG704 GLY705 PHE706 LYS707 LYS708 ALA709 CYS710 GLU711 ASP712 SER713 LEU714 LYS715 ILE716 GLN717 LYS718 ASP719 ASN720 ARG721 GLY722 LEU723 LEU724 ASN725 HIS726 LYS727 ILE728 ASN729 ILE730 ALA731 ARG732 ASN733 THR734 LYS735 GLY736 LYS737 CYS738 GLU739 LYS740 GLU741 ILE742 PHE743 ASN744 LEU745 ILE746 CYS747 LYS748 ILE749 GLU750 GLY751 TYR759 LYS760 HIS761 GLY762 LEU763 ALA764 TYR765 GLU766 LEU767 GLY768 VAL769 LEU770 LEU771 PHE772 GLY773 GLU774 PRO775 ASN776 GLU777 ALA778 SER779 LYS780 PRO781 GLU782 PHE783 ASP784 ARG785 LYS786 ILE787 LYS788 LYS789 PHE790 ASN791 SER792 ILE793 TYR794 SER795 PHE796 ALA797 GLN798 ILE799 GLN800 GLN801 ILE802 ALA803 PHE804 ALA805 GLU806 ARG807 LYS808 GLY809 ASN810 ALA811 ASN812 THR813 CYS814 ALA815 VAL816 CYS817 SER818 ALA819 ASP820 ASN821 ALA822 HIS823 ARG824 MET825 GLN826 GLN827 ILE828 LYS829 ILE830 ILE842 LEU843 SER844 ALA845 LYS846 ALA847 GLN848 ARG849 LEU850 PRO851 ALA852 ILE853 PRO854 THR855 ARG856 ILE857 VAL858 ASP859 GLY860 ALA861 VAL862 LYS863 LYS864 MET865 ALA866 THR867 ILE868 LEU869 ALA870 LYS871 ASN872 ILE873 VAL874 ASP875 ASP876 ASN877 TRP878 GLN879 ASN880 ILE881 LYS882 GLN883 VAL884 LEU885 SER886 ALA887 LYS888 HIS889 GLN890 LEU891 HIS892 ILE893 PRO894 ILE895 ILE896 THR897 GLU898 SER899 ASN900 ALA901 PHE902 GLU903 PHE904 GLU905 PRO906 ALA907 LEU908 ALA909 ASP910 VAL911 LYS912 GLY913 LYS914 SER915 LEU916 LYS917 ASP918 ARG919 ARG920 LYS921 LYS922 ALA923 LEU924 GLU925 ARG926 ILE927 SER928 PRO929 GLU930 ASN931 ILE932 PHE933 LYS934 ASP935 LYS936 ASN937 ASN938 ARG939 ILE940 LYS941 GLU942 PHE943 ALA944 GLU965 GLU966 LEU967 ASP968 HIS969 ILE970 ILE971 PRO972 ARG973 THR980 LEU981 ASN982 ASP983 GLU984 ALA985 ASN986 LEU987 ILE988 CYS989 VAL990 THR991 GLY999 ASN1000 ARG1001 ILE1002 PHE1003 CYS1004 LEU1005 ARG1006 ASP1007 ASN1045 TYR1046 ARG1047 SER1048 PHE1049 ILE1050 ASN1051 LEU1052 THR1053 PRO1054 GLN1055 GLU1056 GLN1057 LYS1058 ALA1059 PHE1060 ARG1061 HIS1062 ALA1063 LEU1064 PHE1065 LEU1066 ALA1067 ASP1068 GLU1069 ASN1070 PRO1071 ILE1072 LYS1073 GLN1074 ALA1075 VAL1076 ILE1077 ARG1078 ALA1079 ILE1080 ASN1081 ASN1082 ARG1083 ASN1084 ARG1085 THR1086 PHE1087 VAL1088 ASN1089 GLY1090 THR1091 GLN1092 ARG1093 TYR1094 PHE1095 ALA1096 GLU1097 VAL1098 LEU1099 ALA1100 ASN1101 ASN1102 ILE1103 TYR1104 LEU1105 ARG1106 ALA1107 LYS1108 LYS1109 GLU1110 ASN1111 LEU1112 ASN1113 THR1114 ASP1115 LYS1116 ILE1117 SER1118 PHE1119 ASP1120 TYR1121 PHE1122 GLY1123 ILE1124 PRO1125 THR1126 ILE1127 GLY1128 ASN1129 GLY1130 ARG1131 GLY1132 ILE1133 ALA1134 GLU1135 ILE1136 ARG1137 GLN1138 LEU1139 TYR1140 GLU1141 LYS1142 VAL1143 ASP1144 SER1145 ASP1146 ILE1147 GLN1148 ALA1149 TYR1150 ALA1151 LYS1152 GLY1153 ASP1154 LYS1155 PRO1156 GLN1157 ALA1158 SER1159 TYR1160 SER1161 HIS1162 LEU1163 ILE1164 ASP1165 ALA1166 MET1167 LEU1168 ALA1169 PHE1170 CYS1171 ILE1172 ALA1173 ALA1174 ASP1175 GLU1176 HIS1177 ARG1178 ASN1179 ASP1180 GLY1181 SER1182 ILE1183 GLY1184 LEU1185 GLU1186 ILE1187 ASP1188 LYS1189 ASN1190 TYR1191 SER1192 LEU1193 TYR1194 PRO1195 ASP1207 ILE1208 PHE1209 SER1210 GLN1211 ILE1212 LYS1213 ILE1214 THR1215 ASP1216 ASN1217 GLU1218 PHE1219 SER1220 ASP1221 LYS1222 LYS1223 LEU1224 VAL1225 ARG1226 LYS1227 LYS1228 ALA1229 ILE1230 GLU1231 GLY1232 PHE1233 ASN1234 THR1235 HIS1236 ARG1237 GLN1238 MET1239 THR1240 ARG1241 ASP1242 GLY1243 ILE1244 TYR1245 ALA1246 GLU1247 ASN1248 TYR1249 LEU1250 PRO1251 ILE1252 LEU1253 ILE1254 HIS1255 LYS1256 GLU1257 LEU1258 ASN1259 GLU1260 VAL1261 ARG1262 LYS1263 GLY1264 TYR1265 THR1266 TRP1267 LYS1268 ASN1269 SER1270 GLU1271 GLU1272 ILE1273 LYS1274 ILE1275 PHE1276 LYS1277 GLY1278 LYS1279 LYS1280 TYR1281 ASP1282 ILE1283 GLN1284 GLN1285 LEU1286 ASN1287 ASN1288 LEU1289 VAL1290 TYR1291 CYS1292 LEU1293 LYS1294 PHE1295 VAL1296 ASP1297 LYS1298 PRO1299 ILE1300 SER1301 ILE1302 ASP1303 ILE1304 GLN1305 ILE1306 SER1307 THR1308 LEU1309 GLU1310 GLU1311 LEU1312 ARG1313 ASN1314 ILE1315 LEU1316 THR1317 THR1318 ASN1319 ASN1320 ILE1321 ALA1322 ALA1323 THR1324 ALA1325 GLU1326 TYR1327 TYR1328 TYR1329 ILE1330 ASN1331 LEU1332 LYS1333 THR1334 GLN1335 LYS1336 LEU1337 HIS1338 GLU1339 TYR1340 TYR1341 ILE1342 GLU1343 ASN1344 TYR1345 ASN1346 THR1347 ALA1348 LEU1349 GLY1350 TYR1351 LYS1352 LYS1353 TYR1354 SER1355 LYS1356 GLU1357 MET1358 GLU1359 PHE1360 LEU1361 ARG1362 SER1363 LEU1364 ALA1365 TYR1366 ARG1367 SER1368 GLU1369 ARG1370 VAL1371 LYS1372 ILE1373 LYS1374 SER1375 ILE1376 ASP1377 ASP1378 VAL1379 LYS1380 GLN1381 VAL1382 LEU1383 ASP1384 LYS1385 ASP1386 SER1387 ASN1388 PHE1389 ILE1390 ILE1391 GLY1392 LYS1393 ILE1394 THR1395 LEU1396 PRO1397 PHE1398 LYS1399 LYS1400 GLU1401 TRP1402 GLN1403 ARG1404 LEU1405 TYR1406 ARG1407 GLU1408 TRP1409 GLN1410 ASN1411 THR1412 THR1413 ILE1414 LYS1415 ASP1416 ASP1417 TYR1418 GLU1419 PHE1420 LEU1421 LYS1422 SER1423 PHE1424 PHE1425 ASN1426 VAL1427 LYS1428 SER1429 ILE1430 THR1431 LYS1432 LEU1433 HIS1434 LYS1435 LYS1436 VAL1437 ARG1438 LYS1439 ASP1440 PHE1441 SER1442 LEU1443 PRO1444 ILE1445 SER1446 THR1447 ASN1448 GLU1449 GLY1450 LYS1451 PHE1452 LEU1453 VAL1454 LYS1455 ARG1456 LYS1457 THR1458 TRP1459 ASP1460 ASN1461 ASN1462 PHE1463 ILE1464 TYR1465 GLN1466 ILE1467 LEU1468 ASN1469 ASP1470 SER1471 ASP1472 SER1473 ARG1474 ALA1475 ASP1476 GLY1477 THR1478 LYS1479 PRO1480 PHE1481 ILE1482 PRO1483 ALA1484 PHE1485 ASP1486 ILE1487 SER1488 LYS1489 ASN1490 GLU1491 ILE1492 VAL1493 GLU1494 ALA1495 ILE1496 ILE1497 ASP1498 SER1499 PHE1500 THR1501 SER1502 LYS1503 ASN1504 ILE1505 PHE1506 TRP1507 LEU1508 PRO1509 LYS1510 ASN1511 ILE1512 GLU1513 LEU1514 GLN1515 LYS1516 VAL1517 ASP1518 ASN1519 LYS1520 ASN1521 ILE1522 PHE1523 ALA1524 ILE1525 ASP1526 THR1527 SER1528 LYS1529 TRP1530 PHE1531 GLU1532 VAL1533 GLU1534 THR1535 PRO1536 SER1537 ASP1538 LEU1539 ARG1540 ASP1541 ILE1542 GLY1543 ILE1544 ALA1545 THR1546 ILE1547 GLN1548 TYR1549 LYS1550 ILE1551 ASP1552 ASN1553 ASN1554 SER1555 ARG1556 PRO1557 LYS1558 VAL1559 ARG1560 VAL1561 LYS1562 LEU1563 ASP1564 TYR1565 VAL1566 ILE1567 ASP1568 ASP1569 ASP1570 SER1571 LYS1572 ILE1573 ASN1574 TYR1575 PHE1576 MET1577 ASN1578 HIS1579 SER1580 LEU1581 LEU1582 LYS1583 SER1584 ARG1585 TYR1586 PRO1587 ASP1588 LYS1589 VAL1590 LEU1591 GLU1592 ILE1593 LEU1594 LYS1595 GLN1596 SER1597 THR1598 ILE1599 ILE1600 GLU1601 PHE1602 GLU1603 SER1604 SER1605 GLY1606 PHE1607 ASN1608 LYS1609 THR1610 ILE1611 LYS1612 GLU1613 MET1614 LEU1615 GLY1616 MET1617 LYS1618 LEU1619 ALA1620 GLY1621 ILE1622
Nucleic acids
Unit 2 G1 G2 G3 A4 A5 A6 U7 U8 A9 G10 G11 U12 G13 C14 G15 C16 U17 G18 G19 G20 G21 G22 U23 U24 U25 C26 A27 G28 U29 U30 G31 C32 G33 C34 C35 G36 A37 A38 A39 G40 G41 C42 G43 C44 U45 C46 U47 G48 U49 A50 A51 U52 C53 A54 U55 U56 DU57 A58 A59 A60 A61 G62 U63 A64 U65 U66 U67 U68 G69 A70 A71 C72 G73 G74 A75 C76 C77 U78 C79 U80 G81 U82 U83 U84 G85 A86 C87 A88 C89 G90 U91 C92 U93 G94
Other macromolecules
Unit 3 DC1 DC2 DG3 DA4 DT5 DA6 DC7 DC8 DA9 DC10 DC11 DC12 DC13 DA14 DG15 DC16 DG17 DC18 DA19 DC20 DC21 DT22 DA23 DA24 DT25 DT26 DT27 DC28 DC29 DC30
Unit 4 DT1 DG2 DG3 DT4 DA5 DT6 DC7 DG8 DG9
Ligands
Unit 5 ZN1701 NA1702 NA1703 CL1704 CL1705 CA1706 CA1707 CA1708 CA1709 CA1710 CA1711 CA1712 CA1713 CA1714 CA1715 EDO1716 EDO1717 EDO1718 EDO1719 EDO1720 EDO1721 EDO1722 EDO1723 EDO1724 EDO1725 EDO1726 EDO1727 ACT1728
Unit 6 NA101 NA102 CA103 CA104 CA105 CA106 CA107 CA108 CA109 EDO110 EDO111 EDO112 EDO113 EDO114 EDO115 EDO116 EDO117 EDO118 EDO119 ACT120
Unit 7 EDO101
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

Go to    [Image Library Home]    [Image Library Entry]
Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany