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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF HUMAN PDE1B WITH INHIBITOR 3
Keywords HYDROLASE, INHIBITOR, HYDROLASE-HYDROLASE INHIBITOR COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5B25     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   CALCIUM/CALMODULIN-DEPENDENT 3',5'-CYCLIC NUCLEOT PHOSPHODIESTERASE 1B  A 335 2694 0
2  Protein   CALCIUM/CALMODULIN-DEPENDENT 3',5'-CYCLIC NUCLEOT PHOSPHODIESTERASE 1B  B 332 2670 0
3  Protein   CALCIUM/CALMODULIN-DEPENDENT 3',5'-CYCLIC NUCLEOT PHOSPHODIESTERASE 1B  C 332 2670 0
4  Protein   CALCIUM/CALMODULIN-DEPENDENT 3',5'-CYCLIC NUCLEOT PHOSPHODIESTERASE 1B  D 332 2670 0
5  Ligand   CALCIUM/CALMODULIN-DEPENDENT 3',5'-CYCLIC NUCLEOT PHOSPHODIESTERASE 1B  A 7 0 62
6  Ligand   CALCIUM/CALMODULIN-DEPENDENT 3',5'-CYCLIC NUCLEOT PHOSPHODIESTERASE 1B  B 8 0 68
7  Ligand   CALCIUM/CALMODULIN-DEPENDENT 3',5'-CYCLIC NUCLEOT PHOSPHODIESTERASE 1B  C 8 0 67
8  Ligand   CALCIUM/CALMODULIN-DEPENDENT 3',5'-CYCLIC NUCLEOT PHOSPHODIESTERASE 1B  D 7 0 61
9 Water     911 0 911
total       2272 10704 1169
Proteins
Unit 1 THR149 TYR150 SER151 THR152 ALA153 VAL154 LEU155 ASN156 CYS157 LEU158 LYS159 ASN160 LEU161 ASP162 LEU163 TRP164 CYS165 PHE166 ASP167 VAL168 PHE169 SER170 LEU171 ASN172 GLN173 ALA174 ALA175 ASP176 ASP177 HIS178 ALA179 LEU180 ARG181 THR182 ILE183 VAL184 PHE185 GLU186 LEU187 LEU188 THR189 ARG190 HIS191 ASN192 LEU193 ILE194 SER195 ARG196 PHE197 LYS198 ILE199 PRO200 THR201 VAL202 PHE203 LEU204 MET205 SER206 PHE207 LEU208 ASP209 ALA210 LEU211 GLU212 THR213 GLY214 TYR215 GLY216 LYS217 TYR218 LYS219 ASN220 PRO221 TYR222 HIS223 ASN224 GLN225 ILE226 HIS227 ALA228 ALA229 ASP230 VAL231 THR232 GLN233 THR234 VAL235 HIS236 CYS237 PHE238 LEU239 LEU240 ARG241 THR242 GLY243 MET244 VAL245 HIS246 CYS247 LEU248 SER249 GLU250 ILE251 GLU252 LEU253 LEU254 ALA255 ILE256 ILE257 PHE258 ALA259 ALA260 ALA261 ILE262 HIS263 ASP264 TYR265 GLU266 HIS267 THR268 GLY269 THR270 THR271 ASN272 SER273 PHE274 HIS275 ILE276 GLN277 THR278 LYS279 SER280 GLU281 CYS282 ALA283 ILE284 VAL285 TYR286 ASN287 ASP288 ARG289 SER290 VAL291 LEU292 GLU293 ASN294 HIS295 HIS296 ILE297 SER298 SER299 VAL300 PHE301 ARG302 LEU303 MET304 GLN305 ASP306 ASP307 GLU308 MET309 ASN310 ILE311 PHE312 ILE313 ASN314 LEU315 THR316 LYS317 ASP318 GLU319 PHE320 VAL321 GLU322 LEU323 ARG324 ALA325 LEU326 VAL327 ILE328 GLU329 MET330 VAL331 LEU332 ALA333 THR334 ASP335 MET336 SER337 CYS338 HIS339 PHE340 GLN341 GLN342 VAL343 LYS344 THR345 MET346 LYS347 THR348 ALA349 LEU350 GLN351 GLN352 LEU353 GLU354 ARG355 ILE356 ASP357 LYS358 PRO359 LYS360 ALA361 LEU362 SER363 LEU364 LEU365 LEU366 HIS367 ALA368 ALA369 ASP370 ILE371 SER372 HIS373 PRO374 THR375 LYS376 GLN377 TRP378 LEU379 VAL380 HIS381 SER382 ARG383 TRP384 THR385 LYS386 ALA387 LEU388 MET389 GLU390 GLU391 PHE392 PHE393 ARG394 GLN395 GLY396 ASP397 LYS398 GLU399 ALA400 GLU401 LEU402 GLY403 LEU404 PRO405 PHE406 SER407 PRO408 LEU409 CYS410 ASP411 ARG412 THR413 SER414 THR415 LEU416 VAL417 ALA418 GLN419 SER420 GLN421 ILE422 GLY423 PHE424 ILE425 ASP426 PHE427 ILE428 VAL429 GLU430 PRO431 THR432 PHE433 SER434 VAL435 LEU436 THR437 ASP438 VAL439 ALA440 GLU441 LYS442 SER443 VAL444 GLN445 PRO446 LEU447 ALA448 GLY472 ASP473 PRO474 ASN475 PRO476 ASP477 VAL478 VAL479 SER480 PHE481 ARG482 SER483 THR484 TRP485 VAL486 LYS487 ARG488 ILE489 GLN490 GLU491 ASN492 LYS493 GLN494 LYS495 TRP496 LYS497 GLU498 ARG499 ALA500 ALA501 SER502 GLY503 ILE504 THR505 ASN506
Unit 2 THR149 TYR150 SER151 THR152 ALA153 VAL154 LEU155 ASN156 CYS157 LEU158 LYS159 ASN160 LEU161 ASP162 LEU163 TRP164 CYS165 PHE166 ASP167 VAL168 PHE169 SER170 LEU171 ASN172 GLN173 ALA174 ALA175 ASP176 ASP177 HIS178 ALA179 LEU180 ARG181 THR182 ILE183 VAL184 PHE185 GLU186 LEU187 LEU188 THR189 ARG190 HIS191 ASN192 LEU193 ILE194 SER195 ARG196 PHE197 LYS198 ILE199 PRO200 THR201 VAL202 PHE203 LEU204 MET205 SER206 PHE207 LEU208 ASP209 ALA210 LEU211 GLU212 THR213 GLY214 TYR215 GLY216 LYS217 TYR218 LYS219 ASN220 PRO221 TYR222 HIS223 ASN224 GLN225 ILE226 HIS227 ALA228 ALA229 ASP230 VAL231 THR232 GLN233 THR234 VAL235 HIS236 CYS237 PHE238 LEU239 LEU240 ARG241 THR242 GLY243 MET244 VAL245 HIS246 CYS247 LEU248 SER249 GLU250 ILE251 GLU252 LEU253 LEU254 ALA255 ILE256 ILE257 PHE258 ALA259 ALA260 ALA261 ILE262 HIS263 ASP264 TYR265 GLU266 HIS267 THR268 GLY269 THR270 THR271 ASN272 SER273 PHE274 HIS275 ILE276 GLN277 THR278 LYS279 SER280 GLU281 CYS282 ALA283 ILE284 VAL285 TYR286 ASN287 ASP288 ARG289 SER290 VAL291 LEU292 GLU293 ASN294 HIS295 HIS296 ILE297 SER298 SER299 VAL300 PHE301 ARG302 LEU303 MET304 GLN305 ASP306 ASP307 GLU308 MET309 ASN310 ILE311 PHE312 ILE313 ASN314 LEU315 THR316 LYS317 ASP318 GLU319 PHE320 VAL321 GLU322 LEU323 ARG324 ALA325 LEU326 VAL327 ILE328 GLU329 MET330 VAL331 LEU332 ALA333 THR334 ASP335 MET336 SER337 CYS338 HIS339 PHE340 GLN341 GLN342 VAL343 LYS344 THR345 MET346 LYS347 THR348 ALA349 LEU350 GLN351 GLN352 LEU353 GLU354 ARG355 ILE356 ASP357 LYS358 PRO359 LYS360 ALA361 LEU362 SER363 LEU364 LEU365 LEU366 HIS367 ALA368 ALA369 ASP370 ILE371 SER372 HIS373 PRO374 THR375 LYS376 GLN377 TRP378 LEU379 VAL380 HIS381 SER382 ARG383 TRP384 THR385 LYS386 ALA387 LEU388 MET389 GLU390 GLU391 PHE392 PHE393 ARG394 GLN395 GLY396 ASP397 LYS398 GLU399 ALA400 GLU401 LEU402 GLY403 LEU404 PRO405 PHE406 SER407 PRO408 LEU409 CYS410 ASP411 ARG412 THR413 SER414 THR415 LEU416 VAL417 ALA418 GLN419 SER420 GLN421 ILE422 GLY423 PHE424 ILE425 ASP426 PHE427 ILE428 VAL429 GLU430 PRO431 THR432 PHE433 SER434 VAL435 LEU436 THR437 ASP438 VAL439 ALA440 GLU441 LYS442 SER443 VAL444 GLN445 PRO446 LEU447 ALA448 GLY472 ASP473 PRO474 ASN475 PRO476 ASP477 VAL478 VAL479 SER480 PHE481 ARG482 SER483 THR484 TRP485 VAL486 LYS487 ARG488 ILE489 GLN490 GLU491 ASN492 LYS493 GLN494 LYS495 TRP496 LYS497 GLU498 ARG499 ALA500 ALA501 SER502 GLY503
Unit 3 THR149 TYR150 SER151 THR152 ALA153 VAL154 LEU155 ASN156 CYS157 LEU158 LYS159 ASN160 LEU161 ASP162 LEU163 TRP164 CYS165 PHE166 ASP167 VAL168 PHE169 SER170 LEU171 ASN172 GLN173 ALA174 ALA175 ASP176 ASP177 HIS178 ALA179 LEU180 ARG181 THR182 ILE183 VAL184 PHE185 GLU186 LEU187 LEU188 THR189 ARG190 HIS191 ASN192 LEU193 ILE194 SER195 ARG196 PHE197 LYS198 ILE199 PRO200 THR201 VAL202 PHE203 LEU204 MET205 SER206 PHE207 LEU208 ASP209 ALA210 LEU211 GLU212 THR213 GLY214 TYR215 GLY216 LYS217 TYR218 LYS219 ASN220 PRO221 TYR222 HIS223 ASN224 GLN225 ILE226 HIS227 ALA228 ALA229 ASP230 VAL231 THR232 GLN233 THR234 VAL235 HIS236 CYS237 PHE238 LEU239 LEU240 ARG241 THR242 GLY243 MET244 VAL245 HIS246 CYS247 LEU248 SER249 GLU250 ILE251 GLU252 LEU253 LEU254 ALA255 ILE256 ILE257 PHE258 ALA259 ALA260 ALA261 ILE262 HIS263 ASP264 TYR265 GLU266 HIS267 THR268 GLY269 THR270 THR271 ASN272 SER273 PHE274 HIS275 ILE276 GLN277 THR278 LYS279 SER280 GLU281 CYS282 ALA283 ILE284 VAL285 TYR286 ASN287 ASP288 ARG289 SER290 VAL291 LEU292 GLU293 ASN294 HIS295 HIS296 ILE297 SER298 SER299 VAL300 PHE301 ARG302 LEU303 MET304 GLN305 ASP306 ASP307 GLU308 MET309 ASN310 ILE311 PHE312 ILE313 ASN314 LEU315 THR316 LYS317 ASP318 GLU319 PHE320 VAL321 GLU322 LEU323 ARG324 ALA325 LEU326 VAL327 ILE328 GLU329 MET330 VAL331 LEU332 ALA333 THR334 ASP335 MET336 SER337 CYS338 HIS339 PHE340 GLN341 GLN342 VAL343 LYS344 THR345 MET346 LYS347 THR348 ALA349 LEU350 GLN351 GLN352 LEU353 GLU354 ARG355 ILE356 ASP357 LYS358 PRO359 LYS360 ALA361 LEU362 SER363 LEU364 LEU365 LEU366 HIS367 ALA368 ALA369 ASP370 ILE371 SER372 HIS373 PRO374 THR375 LYS376 GLN377 TRP378 LEU379 VAL380 HIS381 SER382 ARG383 TRP384 THR385 LYS386 ALA387 LEU388 MET389 GLU390 GLU391 PHE392 PHE393 ARG394 GLN395 GLY396 ASP397 LYS398 GLU399 ALA400 GLU401 LEU402 GLY403 LEU404 PRO405 PHE406 SER407 PRO408 LEU409 CYS410 ASP411 ARG412 THR413 SER414 THR415 LEU416 VAL417 ALA418 GLN419 SER420 GLN421 ILE422 GLY423 PHE424 ILE425 ASP426 PHE427 ILE428 VAL429 GLU430 PRO431 THR432 PHE433 SER434 VAL435 LEU436 THR437 ASP438 VAL439 ALA440 GLU441 LYS442 SER443 VAL444 GLN445 PRO446 LEU447 ALA448 GLY472 ASP473 PRO474 ASN475 PRO476 ASP477 VAL478 VAL479 SER480 PHE481 ARG482 SER483 THR484 TRP485 VAL486 LYS487 ARG488 ILE489 GLN490 GLU491 ASN492 LYS493 GLN494 LYS495 TRP496 LYS497 GLU498 ARG499 ALA500 ALA501 SER502 GLY503
Unit 4 THR149 TYR150 SER151 THR152 ALA153 VAL154 LEU155 ASN156 CYS157 LEU158 LYS159 ASN160 LEU161 ASP162 LEU163 TRP164 CYS165 PHE166 ASP167 VAL168 PHE169 SER170 LEU171 ASN172 GLN173 ALA174 ALA175 ASP176 ASP177 HIS178 ALA179 LEU180 ARG181 THR182 ILE183 VAL184 PHE185 GLU186 LEU187 LEU188 THR189 ARG190 HIS191 ASN192 LEU193 ILE194 SER195 ARG196 PHE197 LYS198 ILE199 PRO200 THR201 VAL202 PHE203 LEU204 MET205 SER206 PHE207 LEU208 ASP209 ALA210 LEU211 GLU212 THR213 GLY214 TYR215 GLY216 LYS217 TYR218 LYS219 ASN220 PRO221 TYR222 HIS223 ASN224 GLN225 ILE226 HIS227 ALA228 ALA229 ASP230 VAL231 THR232 GLN233 THR234 VAL235 HIS236 CYS237 PHE238 LEU239 LEU240 ARG241 THR242 GLY243 MET244 VAL245 HIS246 CYS247 LEU248 SER249 GLU250 ILE251 GLU252 LEU253 LEU254 ALA255 ILE256 ILE257 PHE258 ALA259 ALA260 ALA261 ILE262 HIS263 ASP264 TYR265 GLU266 HIS267 THR268 GLY269 THR270 THR271 ASN272 SER273 PHE274 HIS275 ILE276 GLN277 THR278 LYS279 SER280 GLU281 CYS282 ALA283 ILE284 VAL285 TYR286 ASN287 ASP288 ARG289 SER290 VAL291 LEU292 GLU293 ASN294 HIS295 HIS296 ILE297 SER298 SER299 VAL300 PHE301 ARG302 LEU303 MET304 GLN305 ASP306 ASP307 GLU308 MET309 ASN310 ILE311 PHE312 ILE313 ASN314 LEU315 THR316 LYS317 ASP318 GLU319 PHE320 VAL321 GLU322 LEU323 ARG324 ALA325 LEU326 VAL327 ILE328 GLU329 MET330 VAL331 LEU332 ALA333 THR334 ASP335 MET336 SER337 CYS338 HIS339 PHE340 GLN341 GLN342 VAL343 LYS344 THR345 MET346 LYS347 THR348 ALA349 LEU350 GLN351 GLN352 LEU353 GLU354 ARG355 ILE356 ASP357 LYS358 PRO359 LYS360 ALA361 LEU362 SER363 LEU364 LEU365 LEU366 HIS367 ALA368 ALA369 ASP370 ILE371 SER372 HIS373 PRO374 THR375 LYS376 GLN377 TRP378 LEU379 VAL380 HIS381 SER382 ARG383 TRP384 THR385 LYS386 ALA387 LEU388 MET389 GLU390 GLU391 PHE392 PHE393 ARG394 GLN395 GLY396 ASP397 LYS398 GLU399 ALA400 GLU401 LEU402 GLY403 LEU404 PRO405 PHE406 SER407 PRO408 LEU409 CYS410 ASP411 ARG412 THR413 SER414 THR415 LEU416 VAL417 ALA418 GLN419 SER420 GLN421 ILE422 GLY423 PHE424 ILE425 ASP426 PHE427 ILE428 VAL429 GLU430 PRO431 THR432 PHE433 SER434 VAL435 LEU436 THR437 ASP438 VAL439 ALA440 GLU441 LYS442 SER443 VAL444 GLN445 PRO446 LEU447 ALA448 GLY472 ASP473 PRO474 ASN475 PRO476 ASP477 VAL478 VAL479 SER480 PHE481 ARG482 SER483 THR484 TRP485 VAL486 LYS487 ARG488 ILE489 GLN490 GLU491 ASN492 LYS493 GLN494 LYS495 TRP496 LYS497 GLU498 ARG499 ALA500 ALA501 SER502 GLY503
Ligands
Unit 5 ZN601 MG602 4QJ603 SO4604 SO4605 GOL606 GOL607
Unit 6 ZN601 MG602 4QJ603 SO4604 SO4605 GOL606 GOL607 GOL608
Unit 7 ZN601 MG602 4QJ603 SO4604 SO4605 SO4606 GOL607 GOL608
Unit 8 ZN601 MG602 4QJ603 SO4604 SO4605 SO4606 GOL607
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany