5AY8 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF HUMAN NUCLEOSOME CONTAINING H3.Y
• Keywords: HISTONE FOLD DNA BINDING NUCLEUS, DNA BINDING PROTEIN-DNA CO
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5AY8	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	H3.Y	A	97	794	0
2	Protein	HISTONE H4	B	78	619	0
3	Protein	HISTONE H2A TYPE 1-B/E	C	105	810	0
4	Protein	HISTONE H2B TYPE 1-J	D	92	719	0
5	Protein	H3.Y	E	96	790	0
6	Protein	HISTONE H4	F	79	627	0
7	Protein	HISTONE H2A TYPE 1-B/E	G	104	805	0
8	Protein	HISTONE H2B TYPE 1-J	H	92	719	0
9	Other macromolecule	DNA (146-MER)	I	145	2970	0
10	Other macromolecule	DNA (146-MER)	J	145	2972	0
11	Ligand	H3.Y	A	1	0	1
12	Ligand	HISTONE H2A TYPE 1-B/E	G	1	0	1
13	Ligand	DNA (146-MER)	I	2	0	2
14	Ligand	DNA (146-MER)	J	6	0	6
15	Water			7	0	8
total				1050	11825	18

Proteins

Unit 1	PRO 38 HIS 39 ARG 40 TYR 41 LYS 42 PRO 43 GLY 44 THR 45 LEU 46 ALA 47 LEU 48 ARG 49 GLU 50 ILE 51 ARG 52 LYS 53 TYR 54 GLN 55 LYS 56 SER 57 THR 58 GLN 59 LEU 60 LEU 61 LEU 62 ARG 63 LYS 64 LEU 65 PRO 66 PHE 67 GLN 68 ARG 69 LEU 70 VAL 71 ARG 72 GLU 73 ILE 74 ALA 75 GLN 76 ALA 77 ILE 78 SER 79 PRO 80 ASP 81 LEU 82 ARG 83 PHE 84 GLN 85 SER 86 ALA 87 ALA 88 ILE 89 GLY 90 ALA 91 LEU 92 GLN 93 GLU 94 ALA 95 SER 96 GLU 97 ALA 98 TYR 99 LEU 100 VAL 101 GLN 102 LEU 103 PHE 104 GLU 105 ASP 106 THR 107 ASN 108 LEU 109 CYS 110 ALA 111 ILE 112 HIS 113 ALA 114 ARG 115 ARG 116 VAL 117 THR 118 ILE 119 MET 120 PRO 121 ARG 122 ASP 123 MET 124 GLN 125 LEU 126 ALA 127 ARG 128 ARG 129 LEU 130 ARG 131 ARG 132 GLU 133 GLY 134
Unit 2	ASN 25 ILE 26 GLN 27 GLY 28 ILE 29 THR 30 LYS 31 PRO 32 ALA 33 ILE 34 ARG 35 ARG 36 LEU 37 ALA 38 ARG 39 ARG 40 GLY 41 GLY 42 VAL 43 LYS 44 ARG 45 ILE 46 SER 47 GLY 48 LEU 49 ILE 50 TYR 51 GLU 52 GLU 53 THR 54 ARG 55 GLY 56 VAL 57 LEU 58 LYS 59 VAL 60 PHE 61 LEU 62 GLU 63 ASN 64 VAL 65 ILE 66 ARG 67 ASP 68 ALA 69 VAL 70 THR 71 TYR 72 THR 73 GLU 74 HIS 75 ALA 76 LYS 77 ARG 78 LYS 79 THR 80 VAL 81 THR 82 ALA 83 MET 84 ASP 85 VAL 86 VAL 87 TYR 88 ALA 89 LEU 90 LYS 91 ARG 92 GLN 93 GLY 94 ARG 95 THR 96 LEU 97 TYR 98 GLY 99 PHE 100 GLY 101 GLY 102
Unit 3	ALA 14 LYS 15 THR 16 ARG 17 SER 18 SER 19 ARG 20 ALA 21 GLY 22 LEU 23 GLN 24 PHE 25 PRO 26 VAL 27 GLY 28 ARG 29 VAL 30 HIS 31 ARG 32 LEU 33 LEU 34 ARG 35 LYS 36 GLY 37 ASN 38 TYR 39 SER 40 GLU 41 ARG 42 VAL 43 GLY 44 ALA 45 GLY 46 ALA 47 PRO 48 VAL 49 TYR 50 LEU 51 ALA 52 ALA 53 VAL 54 LEU 55 GLU 56 TYR 57 LEU 58 THR 59 ALA 60 GLU 61 ILE 62 LEU 63 GLU 64 LEU 65 ALA 66 GLY 67 ASN 68 ALA 69 ALA 70 ARG 71 ASP 72 ASN 73 LYS 74 LYS 75 THR 76 ARG 77 ILE 78 ILE 79 PRO 80 ARG 81 HIS 82 LEU 83 GLN 84 LEU 85 ALA 86 ILE 87 ARG 88 ASN 89 ASP 90 GLU 91 GLU 92 LEU 93 ASN 94 LYS 95 LEU 96 LEU 97 GLY 98 ARG 99 VAL 100 THR 101 ILE 102 ALA 103 GLN 104 GLY 105 GLY 106 VAL 107 LEU 108 PRO 109 ASN 110 ILE 111 GLN 112 ALA 113 VAL 114 LEU 115 LEU 116 PRO 117 LYS 118
Unit 4	ARG 33 LYS 34 GLU 35 SER 36 TYR 37 SER 38 ILE 39 TYR 40 VAL 41 TYR 42 LYS 43 VAL 44 LEU 45 LYS 46 GLN 47 VAL 48 HIS 49 PRO 50 ASP 51 THR 52 GLY 53 ILE 54 SER 55 SER 56 LYS 57 ALA 58 MET 59 GLY 60 ILE 61 MET 62 ASN 63 SER 64 PHE 65 VAL 66 ASN 67 ASP 68 ILE 69 PHE 70 GLU 71 ARG 72 ILE 73 ALA 74 GLY 75 GLU 76 ALA 77 SER 78 ARG 79 LEU 80 ALA 81 HIS 82 TYR 83 ASN 84 LYS 85 ARG 86 SER 87 THR 88 ILE 89 THR 90 SER 91 ARG 92 GLU 93 ILE 94 GLN 95 THR 96 ALA 97 VAL 98 ARG 99 LEU 100 LEU 101 LEU 102 PRO 103 GLY 104 GLU 105 LEU 106 ALA 107 LYS 108 HIS 109 ALA 110 VAL 111 SER 112 GLU 113 GLY 114 THR 115 LYS 116 ALA 117 VAL 118 THR 119 LYS 120 TYR 121 THR 122 SER 123 ALA 124
Unit 5	PRO 38 HIS 39 ARG 40 TYR 41 LYS 42 PRO 43 GLY 44 THR 45 LEU 46 ALA 47 LEU 48 ARG 49 GLU 50 ILE 51 ARG 52 LYS 53 TYR 54 GLN 55 LYS 56 SER 57 THR 58 GLN 59 LEU 60 LEU 61 LEU 62 ARG 63 LYS 64 LEU 65 PRO 66 PHE 67 GLN 68 ARG 69 LEU 70 VAL 71 ARG 72 GLU 73 ILE 74 ALA 75 GLN 76 ALA 77 ILE 78 SER 79 PRO 80 ASP 81 LEU 82 ARG 83 PHE 84 GLN 85 SER 86 ALA 87 ALA 88 ILE 89 GLY 90 ALA 91 LEU 92 GLN 93 GLU 94 ALA 95 SER 96 GLU 97 ALA 98 TYR 99 LEU 100 VAL 101 GLN 102 LEU 103 PHE 104 GLU 105 ASP 106 THR 107 ASN 108 LEU 109 CYS 110 ALA 111 ILE 112 HIS 113 ALA 114 ARG 115 ARG 116 VAL 117 THR 118 ILE 119 MET 120 PRO 121 ARG 122 ASP 123 MET 124 GLN 125 LEU 126 ALA 127 ARG 128 ARG 129 LEU 130 ARG 131 ARG 132 GLU 133
Unit 6	ASP 24 ASN 25 ILE 26 GLN 27 GLY 28 ILE 29 THR 30 LYS 31 PRO 32 ALA 33 ILE 34 ARG 35 ARG 36 LEU 37 ALA 38 ARG 39 ARG 40 GLY 41 GLY 42 VAL 43 LYS 44 ARG 45 ILE 46 SER 47 GLY 48 LEU 49 ILE 50 TYR 51 GLU 52 GLU 53 THR 54 ARG 55 GLY 56 VAL 57 LEU 58 LYS 59 VAL 60 PHE 61 LEU 62 GLU 63 ASN 64 VAL 65 ILE 66 ARG 67 ASP 68 ALA 69 VAL 70 THR 71 TYR 72 THR 73 GLU 74 HIS 75 ALA 76 LYS 77 ARG 78 LYS 79 THR 80 VAL 81 THR 82 ALA 83 MET 84 ASP 85 VAL 86 VAL 87 TYR 88 ALA 89 LEU 90 LYS 91 ARG 92 GLN 93 GLY 94 ARG 95 THR 96 LEU 97 TYR 98 GLY 99 PHE 100 GLY 101 GLY 102
Unit 7	LYS 15 THR 16 ARG 17 SER 18 SER 19 ARG 20 ALA 21 GLY 22 LEU 23 GLN 24 PHE 25 PRO 26 VAL 27 GLY 28 ARG 29 VAL 30 HIS 31 ARG 32 LEU 33 LEU 34 ARG 35 LYS 36 GLY 37 ASN 38 TYR 39 SER 40 GLU 41 ARG 42 VAL 43 GLY 44 ALA 45 GLY 46 ALA 47 PRO 48 VAL 49 TYR 50 LEU 51 ALA 52 ALA 53 VAL 54 LEU 55 GLU 56 TYR 57 LEU 58 THR 59 ALA 60 GLU 61 ILE 62 LEU 63 GLU 64 LEU 65 ALA 66 GLY 67 ASN 68 ALA 69 ALA 70 ARG 71 ASP 72 ASN 73 LYS 74 LYS 75 THR 76 ARG 77 ILE 78 ILE 79 PRO 80 ARG 81 HIS 82 LEU 83 GLN 84 LEU 85 ALA 86 ILE 87 ARG 88 ASN 89 ASP 90 GLU 91 GLU 92 LEU 93 ASN 94 LYS 95 LEU 96 LEU 97 GLY 98 ARG 99 VAL 100 THR 101 ILE 102 ALA 103 GLN 104 GLY 105 GLY 106 VAL 107 LEU 108 PRO 109 ASN 110 ILE 111 GLN 112 ALA 113 VAL 114 LEU 115 LEU 116 PRO 117 LYS 118
Unit 8	ARG 33 LYS 34 GLU 35 SER 36 TYR 37 SER 38 ILE 39 TYR 40 VAL 41 TYR 42 LYS 43 VAL 44 LEU 45 LYS 46 GLN 47 VAL 48 HIS 49 PRO 50 ASP 51 THR 52 GLY 53 ILE 54 SER 55 SER 56 LYS 57 ALA 58 MET 59 GLY 60 ILE 61 MET 62 ASN 63 SER 64 PHE 65 VAL 66 ASN 67 ASP 68 ILE 69 PHE 70 GLU 71 ARG 72 ILE 73 ALA 74 GLY 75 GLU 76 ALA 77 SER 78 ARG 79 LEU 80 ALA 81 HIS 82 TYR 83 ASN 84 LYS 85 ARG 86 SER 87 THR 88 ILE 89 THR 90 SER 91 ARG 92 GLU 93 ILE 94 GLN 95 THR 96 ALA 97 VAL 98 ARG 99 LEU 100 LEU 101 LEU 102 PRO 103 GLY 104 GLU 105 LEU 106 ALA 107 LYS 108 HIS 109 ALA 110 VAL 111 SER 112 GLU 113 GLY 114 THR 115 LYS 116 ALA 117 VAL 118 THR 119 LYS 120 TYR 121 THR 122 SER 123 ALA 124

Other macromolecules

Unit 9

DA 1 DT 2 DC 3 DA 4 DA 5 DT 6 DA 7 DT 8 DC 9 DC 10 DA 11 DC 12 DC 13 DT 14 DG 15 DC 16 DA 17 DG 18 DA 19 DT 20 DT 21 DC 22 DT 23 DA 24 DC 25 DC 26 DA 27 DA 28 DA 29 DA 30 DG 31 DT 32 DG 33 DT 34 DA 35 DT 36 DT 37 DT 38 DG 39 DG 40 DA 41 DA 42 DA 43 DC 44 DT 45 DG 46 DC 47 DT 48 DC 49 DC 50 DA 51 DT 52 DC 53 DA 54 DA 55 DA 56 DA 57 DG 58 DG 59 DC 60 DA 61 DT 62 DG 63 DT 64 DT 65 DC 66 DA 67 DG 68 DC 69 DT 70 DG 71 DA 72 DA 73 DT 74 DT 75 DC 76 DA 77 DG 78 DC 79 DT 80 DG 81 DA 82 DA 83 DC 84 DA 85 DT 86 DG 87 DC 88 DC 89 DT 90 DT 91 DT 92 DT 93 DG 94 DA 95 DT 96 DG 97 DG 98 DA 99 DG 100 DC 101 DA 102 DG 103 DT 104 DT 105 DT 106 DC 107 DC 108 DA 109 DA 110 DA 111 DT 112 DA 113 DC 114 DA 115 DC 116 DT 117 DT 118 DT 119 DT 120 DG 121 DG 122 DT 123 DA 124 DG 125 DA 126 DA 127 DT 128 DC 129 DT 130 DG 131 DC 132 DA 133 DG 134 DG 135 DT 136 DG 137 DG 138 DA 139 DT 140 DA 141 DT 142 DT 143 DG 144 DA 145

Unit 10

DT 148 DC 149 DA 150 DA 151 DT 152 DA 153 DT 154 DC 155 DC 156 DA 157 DC 158 DC 159 DT 160 DG 161 DC 162 DA 163 DG 164 DA 165 DT 166 DT 167 DC 168 DT 169 DA 170 DC 171 DC 172 DA 173 DA 174 DA 175 DA 176 DG 177 DT 178 DG 179 DT 180 DA 181 DT 182 DT 183 DT 184 DG 185 DG 186 DA 187 DA 188 DA 189 DC 190 DT 191 DG 192 DC 193 DT 194 DC 195 DC 196 DA 197 DT 198 DC 199 DA 200 DA 201 DA 202 DA 203 DG 204 DG 205 DC 206 DA 207 DT 208 DG 209 DT 210 DT 211 DC 212 DA 213 DG 214 DC 215 DT 216 DG 217 DA 218 DA 219 DT 220 DT 221 DC 222 DA 223 DG 224 DC 225 DT 226 DG 227 DA 228 DA 229 DC 230 DA 231 DT 232 DG 233 DC 234 DC 235 DT 236 DT 237 DT 238 DT 239 DG 240 DA 241 DT 242 DG 243 DG 244 DA 245 DG 246 DC 247 DA 248 DG 249 DT 250 DT 251 DT 252 DC 253 DC 254 DA 255 DA 256 DA 257 DT 258 DA 259 DC 260 DA 261 DC 262 DT 263 DT 264 DT 265 DT 266 DG 267 DG 268 DT 269 DA 270 DG 271 DA 272 DA 273 DT 274 DC 275 DT 276 DG 277 DC 278 DA 279 DG 280 DG 281 DT 282 DG 283 DG 284 DA 285 DT 286 DA 287 DT 288 DT 289 DG 290 DA 291 DT 292

Ligands

Unit 11	MN 201
Unit 12	MN 201
Unit 13	MN 201 MN 202
Unit 14	MN 301 MN 302 MN 303 MN 304 CL 305 CL 306