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Sequence, Chains, Asymmetric and Biological Units

Title RHODOBACTER SPHAEROIDES ARGONAUTE IN COMPLEX WITH GUIDE RNA/ HETERODUPLEX
Keywords ARGONAUTE, RNA-GUIDED DNA SILENCING, RNA BINDING PROTEIN-DNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5AWH     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   UNCHARACTERIZED PROTEIN  A 759 6005 0
2  Protein   UNCHARACTERIZED PROTEIN  B 715 5664 0
3  RNA    C 18 374 0
4  Other macromolecule    D 18 375 0
5  RNA    E 18 374 0
6  Other macromolecule    F 18 375 0
7  Ligand    C 1 0 1
8  Ligand    E 1 0 1
9 Water     636 0 636
total       2184 13167 638
Proteins
Unit 1 HIS19 MET20 GLN21 LEU22 VAL23 SER24 ASN25 GLY26 PHE27 GLU28 VAL29 ASN30 LEU31 PRO32 ASP33 GLN34 VAL35 GLU36 VAL37 ILE38 VAL39 ARG40 ASP41 LEU42 PRO43 ASP44 PRO45 SER46 LYS47 VAL48 LYS49 GLU50 GLU51 ARG52 THR53 ARG54 LEU55 MET56 GLY57 TYR58 TRP59 PHE60 VAL61 HIS62 TRP63 PHE64 ASP65 GLY66 LYS67 LEU68 PHE69 HIS70 LEU71 ARG72 ILE73 LYS74 ALA75 GLY76 GLY77 PRO78 ASN79 VAL80 ASP81 GLY82 GLU83 HIS84 ARG85 ALA86 ILE87 ARG88 THR89 ALA90 GLU91 HIS92 PRO93 TRP94 LEU95 LEU96 ARG97 ALA98 ARG99 LEU100 ASP101 ASP102 ALA103 LEU104 GLU105 GLU106 ALA107 LEU108 PRO109 LYS110 TYR111 ALA112 ALA113 VAL114 LYS115 LYS116 ARG117 PRO118 PHE119 THR120 PHE121 LEU122 ALA123 GLN124 LYS125 ASP126 GLU127 LEU128 ILE129 ASP130 ALA131 ALA132 ALA133 THR134 ALA135 ALA136 GLY137 LEU138 SER139 HIS140 ARG141 LEU142 LEU143 ASN144 SER145 PHE146 LYS147 VAL148 ILE149 PRO150 ARG151 PHE152 ALA153 LEU154 SER155 PRO156 LYS157 ILE158 TYR159 GLU160 PRO161 VAL162 ASP163 GLY164 THR165 THR166 ARG167 VAL168 GLY169 VAL170 PHE171 VAL172 THR173 ILE174 GLY175 MET176 ARG177 TYR178 ASP179 ILE180 GLU181 ALA182 SER183 LEU184 ARG185 ASP186 LEU187 LEU188 GLU189 ALA190 GLY191 ILE192 ASP193 LEU194 ARG195 GLY196 MET197 TYR198 VAL199 VAL200 ARG201 ARG202 LYS203 ARG204 GLN205 PRO206 GLY207 GLU208 ARG209 GLY210 LEU211 LEU212 GLY213 ARG214 VAL215 ARG216 ALA217 ILE218 SER219 ASP220 ASP221 MET222 VAL223 GLN224 LEU225 PHE226 GLU227 GLU228 THR229 ASP230 LEU231 ALA232 SER233 VAL234 ASN235 VAL236 ASN237 ASP238 ALA239 LYS240 LEU241 GLU242 GLY243 SER244 LYS245 GLU246 ASN247 PHE248 THR249 ARG250 CYS251 LEU252 SER253 ALA254 LEU255 LEU256 GLY257 HIS258 ASN259 TYR260 LYS261 LYS262 LEU263 LEU264 ASN265 ALA266 LEU267 ASP268 ASP269 GLN270 GLU271 ALA272 GLY273 TYR274 ARG275 THR276 GLY277 PRO278 ARG279 PHE280 ASP281 ASP282 ALA283 VAL284 ARG285 ARG286 MET287 GLY288 GLU289 PHE290 LEU291 ALA292 LYS293 LYS294 PRO295 ILE296 ARG297 LEU298 ALA299 ASP300 ASN301 ILE302 ASN303 ALA304 GLN305 VAL306 GLY307 ASP308 ARG309 ILE310 VAL311 PHE312 SER313 ASN314 GLU315 GLY316 GLN317 ALA318 ARG319 ASN320 VAL321 ARG322 LEU323 ALA324 PRO325 LYS326 VAL327 GLU328 TYR329 VAL330 PHE331 ASP332 ARG333 THR334 GLY335 ALA336 LYS337 SER338 ALA339 GLU340 TYR341 ALA342 TRP343 ARG344 GLY345 LEU346 SER347 GLN348 PHE349 GLY350 PRO351 PHE352 ASP353 ARG354 PRO355 SER356 PHE357 ALA358 ASN359 ARG360 SER361 PRO362 ARG363 ILE364 LEU365 VAL366 VAL367 TYR368 PRO369 SER370 SER371 THR372 GLN373 GLY374 LYS375 VAL376 GLU377 ASN378 PHE379 LEU380 SER381 ALA382 PHE383 ARG384 ASP385 GLY386 MET387 GLY388 SER389 ASN390 TYR391 SER392 GLY393 PHE394 SER395 LYS396 GLY397 PHE398 VAL399 ASP400 LEU401 MET402 GLY403 LEU404 THR405 LYS406 VAL407 GLU408 PHE409 VAL410 MET411 CYS412 PRO413 VAL414 GLU415 VAL416 SER417 SER418 ALA419 ASP420 ARG421 ASN422 GLY423 ALA424 HIS425 THR426 LYS427 TYR428 ASN429 SER430 ALA431 ILE432 GLU433 ASP434 LYS435 LEU436 ALA437 GLY438 ALA439 GLY440 GLU441 VAL442 HIS443 ALA444 GLY445 ILE446 VAL447 VAL448 LEU449 PHE450 GLU451 ASP452 HIS453 ALA454 ARG455 LEU456 PRO457 ASP458 ASP459 ARG460 ASN461 PRO462 TYR463 ILE464 HIS465 THR466 LYS467 SER468 LEU469 LEU470 LEU471 THR472 LEU473 GLY474 VAL475 PRO476 THR477 GLN478 GLN479 VAL480 ARG481 MET482 PRO483 THR484 VAL485 LEU486 LEU487 GLU488 PRO489 LYS490 SER491 LEU492 GLN493 TYR494 THR495 LEU496 GLN497 ASN498 PHE499 SER500 ILE501 ALA502 THR503 TYR504 ALA505 LYS506 LEU507 ASN508 GLY509 THR510 PRO511 TRP512 THR513 VAL514 ASN515 HIS516 ASP517 LYS518 ALA519 ILE520 ASN521 ASP522 GLU523 LEU524 VAL525 VAL526 GLY527 MET528 GLY529 LEU530 ALA531 GLU532 LEU533 SER534 GLY535 SER536 ARG537 THR538 GLU539 LYS540 ARG541 GLN542 ARG543 PHE544 VAL545 GLY546 ILE547 THR548 THR549 VAL550 PHE551 ALA552 GLY553 ASP554 GLY555 SER556 TYR557 LEU558 LEU559 GLY560 ASN561 VAL562 SER563 LYS564 GLU565 CYS566 GLU567 TYR568 GLU569 GLY570 TYR571 SER572 ASP573 ALA574 ILE575 ARG576 GLU577 SER578 MET579 THR580 GLY581 ILE582 LEU583 ARG584 GLU585 LEU586 LYS587 LYS588 ARG589 ASN590 ASN591 TRP592 ARG593 PRO594 GLY595 ASP596 THR597 VAL598 ARG599 VAL600 VAL601 PHE602 HIS603 ALA604 HIS605 ARG606 PRO607 LEU608 LYS609 ARG610 VAL611 ASP612 VAL613 ALA614 SER615 ILE616 VAL617 PHE618 GLU619 CYS620 THR621 ARG622 GLU623 ILE624 GLY625 SER626 ASP627 GLN628 ASN629 ILE630 GLN631 MET632 ALA633 PHE634 VAL635 THR636 VAL637 SER638 HIS639 ASP640 HIS641 PRO642 PHE643 VAL644 LEU645 ILE646 ASP647 ARG648 SER649 GLU650 ARG651 GLY652 LEU653 GLU654 ALA655 TYR656 LYS657 GLY658 SER659 THR660 ALA661 ARG662 LYS663 GLY664 VAL665 PHE666 ALA667 PRO668 PRO669 ARG670 GLY671 ALA672 ILE673 SER674 ARG675 VAL676 GLY677 ARG678 LEU679 THR680 ARG681 LEU682 LEU683 ALA684 VAL685 ASN686 SER687 PRO688 GLN689 LEU690 ILE691 LYS692 ARG693 ALA694 ASN695 THR696 PRO697 LEU698 PRO699 THR700 PRO701 LEU702 LEU703 VAL704 SER705 LEU706 HIS707 PRO708 ASP709 SER710 THR711 PHE712 LYS713 ASP714 VAL715 ASP716 TYR717 LEU718 ALA719 GLU720 GLN721 ALA722 LEU723 LYS724 PHE725 THR726 SER727 LEU728 SER729 TRP730 ARG731 SER732 THR733 LEU734 PRO735 ALA736 ALA737 THR738 PRO739 VAL740 THR741 ILE742 PHE743 TYR744 SER745 GLU746 ARG747 ILE748 ALA749 GLU750 LEU751 LEU752 GLY753 ARG754 LEU755 LYS756 SER757 ILE758 PRO759 ASN760 TRP761 SER762 SER763 ALA764 ASN765 LEU766 ASN767 ILE768 LYS769 LEU770 LYS771 TRP772 SER773 ARG774 TRP775 PHE776 LEU777
Unit 2 GLN21 LEU22 VAL23 SER24 ASN25 GLY26 PHE27 GLU28 VAL29 ASN30 LEU31 PRO32 ASP33 GLN34 VAL35 GLU36 VAL37 ILE38 VAL39 ARG40 ASP41 LEU42 PRO43 ASP44 PRO45 SER46 LYS47 VAL48 LYS49 GLU50 GLU51 ARG52 THR53 ARG54 LEU55 MET56 GLY57 TYR58 TRP59 PHE60 VAL61 HIS62 TRP63 PHE64 ASP65 GLY66 LYS67 LEU68 PHE69 HIS70 LEU71 ARG72 ILE73 LYS74 ALA75 GLY76 GLY77 PRO78 ASN79 VAL80 ASP81 GLY82 GLU83 HIS84 ARG85 ALA86 ILE87 ARG88 THR89 ALA90 GLU91 HIS92 PRO93 TRP94 LEU95 LEU96 ARG97 ALA98 ARG99 LEU100 ASP101 ASP102 ALA103 LEU104 GLU105 GLU106 ALA107 LEU108 PRO109 LYS110 TYR111 ALA112 ALA113 VAL114 LYS115 LYS116 ARG117 PRO118 PHE119 THR120 PHE121 LEU122 ALA123 GLN124 LYS125 ASP126 GLU127 LEU128 ILE129 ASP130 ALA131 ALA132 ALA133 THR134 ALA135 ALA136 GLY137 LEU138 SER139 HIS140 ARG141 LEU142 LEU143 ASN144 SER145 PHE146 LYS147 VAL148 ILE149 PRO150 ARG151 PHE152 ALA153 LEU154 SER155 PRO156 LYS157 ILE158 TYR159 GLU160 PRO161 VAL162 ASP163 GLY164 THR165 THR166 ARG167 VAL168 GLY169 VAL170 PHE171 VAL172 THR173 ILE174 GLY175 MET176 ARG177 TYR178 ASP179 ILE180 GLU181 ALA182 SER183 LEU194 ARG195 GLY196 MET197 TYR198 VAL199 VAL200 ARG201 ARG202 LYS203 ARG204 ARG209 GLY210 LEU211 LEU212 GLY213 ARG214 VAL215 ALA239 LYS240 LEU241 GLU242 GLY243 SER244 LYS245 GLU246 ASN247 PHE248 THR249 ARG250 CYS251 LEU252 SER253 ALA254 LEU255 LEU256 GLY257 HIS258 ASN259 TYR260 LYS261 LYS262 LEU263 LEU264 ASN265 ALA266 LEU267 ASP268 ASP269 GLN270 GLU271 ALA272 GLY273 TYR274 ARG275 THR276 GLY277 PRO278 ARG279 PHE280 ASP281 ASP282 ALA283 VAL284 ARG285 ARG286 MET287 GLY288 GLU289 PHE290 LEU291 ALA292 LYS293 LYS294 PRO295 ILE296 ARG297 LEU298 ALA299 ASP300 ASN301 ILE302 ASN303 ALA304 GLN305 VAL306 GLY307 ASP308 ARG309 ILE310 VAL311 PHE312 SER313 ASN314 GLU315 GLY316 GLN317 ALA318 ARG319 ASN320 VAL321 ARG322 LEU323 ALA324 PRO325 LYS326 VAL327 GLU328 TYR329 VAL330 PHE331 ASP332 ARG333 THR334 GLY335 ALA336 LYS337 SER338 ALA339 GLU340 TYR341 ALA342 TRP343 ARG344 GLY345 LEU346 SER347 GLN348 PHE349 GLY350 PRO351 PHE352 ASP353 ARG354 PRO355 SER356 PHE357 ALA358 ASN359 ARG360 SER361 PRO362 ARG363 ILE364 LEU365 VAL366 VAL367 TYR368 PRO369 SER370 SER371 THR372 GLN373 GLY374 LYS375 VAL376 GLU377 ASN378 PHE379 LEU380 SER381 ALA382 PHE383 ARG384 ASP385 GLY386 MET387 GLY388 SER389 ASN390 TYR391 SER392 GLY393 PHE394 SER395 LYS396 GLY397 PHE398 VAL399 ASP400 LEU401 MET402 GLY403 LEU404 THR405 LYS406 VAL407 GLU408 PHE409 VAL410 MET411 CYS412 PRO413 VAL414 GLU415 VAL416 SER417 SER418 ALA419 ASP420 ARG421 ASN422 GLY423 ALA424 HIS425 THR426 LYS427 TYR428 ASN429 SER430 ALA431 ILE432 GLU433 ASP434 LYS435 LEU436 ALA437 GLY438 ALA439 GLY440 GLU441 VAL442 HIS443 ALA444 GLY445 ILE446 VAL447 VAL448 LEU449 PHE450 GLU451 ASP452 HIS453 ALA454 ARG455 LEU456 PRO457 ASP458 ASP459 ARG460 ASN461 PRO462 TYR463 ILE464 HIS465 THR466 LYS467 SER468 LEU469 LEU470 LEU471 THR472 LEU473 GLY474 VAL475 PRO476 THR477 GLN478 GLN479 VAL480 ARG481 MET482 PRO483 THR484 VAL485 LEU486 LEU487 GLU488 PRO489 LYS490 SER491 LEU492 GLN493 TYR494 THR495 LEU496 GLN497 ASN498 PHE499 SER500 ILE501 ALA502 THR503 TYR504 ALA505 LYS506 LEU507 ASN508 GLY509 THR510 PRO511 TRP512 THR513 VAL514 ASN515 HIS516 ASP517 LYS518 ALA519 ILE520 ASN521 ASP522 GLU523 LEU524 VAL525 VAL526 GLY527 MET528 GLY529 LEU530 ALA531 GLU532 LEU533 SER534 GLY535 SER536 ARG537 THR538 GLU539 LYS540 ARG541 GLN542 ARG543 PHE544 VAL545 GLY546 ILE547 THR548 THR549 VAL550 PHE551 ALA552 GLY553 ASP554 GLY555 SER556 TYR557 LEU558 LEU559 GLY560 ASN561 VAL562 SER563 LYS564 GLU565 CYS566 GLU567 TYR568 GLU569 GLY570 TYR571 SER572 ASP573 ALA574 ILE575 ARG576 GLU577 SER578 MET579 THR580 GLY581 ILE582 LEU583 ARG584 GLU585 LEU586 LYS587 LYS588 ARG589 ASN590 ASN591 TRP592 ARG593 PRO594 GLY595 ASP596 THR597 VAL598 ARG599 VAL600 VAL601 PHE602 HIS603 ALA604 HIS605 ARG606 PRO607 LEU608 LYS609 ARG610 VAL611 ASP612 VAL613 ALA614 SER615 ILE616 VAL617 PHE618 GLU619 CYS620 THR621 ARG622 GLU623 ILE624 GLY625 SER626 ASP627 GLN628 ASN629 ILE630 GLN631 MET632 ALA633 PHE634 VAL635 THR636 VAL637 SER638 HIS639 ASP640 HIS641 PRO642 PHE643 VAL644 LEU645 ILE646 ASP647 ARG648 SER649 GLU650 ARG651 GLY652 LEU653 GLU654 ALA655 ALA661 ARG662 LYS663 GLY664 VAL665 PHE666 ALA667 PRO668 PRO669 ARG670 GLY671 ALA672 ILE673 SER674 ARG675 VAL676 GLY677 ARG678 LEU679 THR680 ARG681 LEU682 LEU683 ALA684 VAL685 ASN686 SER687 PRO688 GLN689 LEU690 ILE691 LYS692 ARG693 ALA694 ASN695 THR696 PRO697 LEU698 PRO699 THR700 PRO701 LEU702 LEU703 VAL704 SER705 LEU706 HIS707 PRO708 ASP709 SER710 THR711 PHE712 LYS713 ASP714 VAL715 ASP716 TYR717 LEU718 ALA719 GLU720 GLN721 ALA722 LEU723 LYS724 PHE725 THR726 SER727 LEU728 SER729 TRP730 ARG731 SER732 THR733 LEU734 PRO735 ALA736 ALA737 THR738 PRO739 VAL740 THR741 ILE742 PHE743 TYR744 SER745 GLU746 ARG747 ILE748 ALA749 GLU750 LEU751 LEU752 GLY753 ARG754 LEU755 LYS756 SER757 ILE758 PRO759 ASN760 TRP761 SER762 SER763 ALA764 ASN765 LEU766 ASN767 ILE768 LYS769 LEU770 LYS771 TRP772 SER773 ARG774 TRP775 PHE776 LEU777
Nucleic acids
Unit 3 U1 U2 A3 C4 A5 A6 C7 C8 U9 A10 C11 U12 A13 C14 C15 U16 C17 G18
Unit 5 U1 U2 A3 C4 A5 A6 C7 C8 U9 A10 C11 U12 A13 C14 C15 U16 C17 G18
Other macromolecules
Unit 4 DC1 DG2 DA3 DG4 DG5 DT6 DA7 DG8 DT9 DA10 DG11 DG12 DT13 DT14 DG15 DT16 DA17 DA18
Unit 6 DC1 DG2 DA3 DG4 DG5 DT6 DA7 DG8 DT9 DA10 DG11 DG12 DT13 DT14 DG15 DT16 DA17 DA18
Ligands
Unit 7 MG101
Unit 8 MG101
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany