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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF THE LA CROSSE BUNYAVIRUS POLYMERASE IN COMPLEX 3' VIRAL RNA
Keywords HYDROLASE, POLYMERASE, RNADRNAPOL, BUNYAVIRUS, RNA
Experiment X-ray diffraction
Number of Models  1

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PDB   5AMR     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   RNA POLYMERASE L  A 1657 13571 0
2  RNA    B 16 334 0
3  RNA    C 8 166 0
4 Water     91 0 92
total       1772 14071 92
Proteins
Unit 1 GLY0 MET1 ASP2 TYR3 GLN4 GLU5 TYR6 GLN7 GLN8 PHE9 LEU10 ALA11 ARG12 ILE13 ASN14 THR15 ALA16 ARG17 ASP18 ALA19 CYS20 VAL21 ALA22 LYS23 ASP24 ILE25 ASP26 VAL27 ASP28 LEU29 LEU30 MET31 ALA32 ARG33 HIS34 ASP35 TYR36 PHE37 GLY38 ARG39 GLU40 LEU41 CYS42 LYS43 SER44 LEU45 ASN46 ILE47 GLU48 TYR49 ARG50 ASN51 ASP52 VAL53 PRO54 PHE55 ILE56 ASP57 ILE58 ILE59 LEU60 ASP61 ILE62 ARG63 PRO64 GLU65 VAL66 ASP67 PRO68 LEU69 THR70 ILE71 ASP72 ALA73 PRO74 HIS75 ILE76 THR77 PRO78 ASP79 ASN80 TYR81 LEU82 TYR83 ILE84 ASN85 ASN86 VAL87 LEU88 TYR89 ILE90 ILE91 ASP92 TYR93 LYS94 VAL95 SER96 VAL97 SER98 ASN99 GLU100 SER101 SER102 VAL103 ILE104 THR105 TYR106 ASP107 LYS108 TYR109 TYR110 GLU111 LEU112 THR113 ARG114 ASP115 ILE116 SER117 ASP118 ARG119 LEU120 SER121 ILE122 PRO123 ILE124 GLU125 ILE126 VAL127 ILE128 ILE129 ARG130 ILE131 ASP132 PRO133 VAL134 SER135 ARG136 ASP137 LEU138 HIS139 ILE140 ASN141 SER142 ASP143 ARG144 PHE145 LYS146 GLU147 LEU148 TYR149 PRO150 THR151 ILE152 VAL153 VAL154 ASP155 ILE156 ASN157 PHE158 ASN159 GLN160 PHE161 PHE162 ASP163 LEU164 LYS165 GLN166 LEU167 LEU168 TYR169 GLU170 LYS171 PHE172 GLY173 ASP174 ASP175 GLU176 GLU177 PHE178 LEU179 LEU180 LYS181 VAL182 ALA183 HIS184 GLY185 ASP186 PHE187 THR188 LEU189 THR190 ALA191 PRO192 TRP193 CYS194 LYS195 THR196 GLY197 CYS198 PRO199 GLU200 PHE201 TRP202 LYS203 HIS204 PRO205 ILE206 TYR207 LYS208 GLU209 PHE210 LYS211 MET212 SER213 MET214 PRO215 VAL216 PRO217 GLU218 ARG219 ARG220 LEU221 PHE222 GLU223 GLU224 SER225 VAL226 LYS227 PHE228 ASN229 ALA230 TYR231 GLU232 SER233 GLU234 ARG235 TRP236 ASN237 THR238 ASN239 LEU240 VAL241 LYS242 ILE243 ARG244 GLU245 TYR246 THR247 LYS248 LYS249 ASP250 TYR251 SER252 GLU253 HIS254 ILE255 SER256 LYS257 SER258 ALA259 LYS260 ASN261 ILE262 PHE263 LEU264 ALA265 SER266 GLY267 PHE268 TYR269 LYS270 GLN271 PRO272 ASN273 LYS274 ASN275 GLU276 ILE277 SER278 GLU279 GLY280 TRP281 THR282 LEU283 MET284 VAL285 GLU286 ARG287 VAL288 GLN289 ASP290 GLN291 ARG292 GLU293 ILE294 SER295 LYS296 SER297 LEU298 HIS299 ASP300 GLN301 LYS302 PRO303 SER304 ILE305 HIS306 PHE307 ILE308 TRP309 GLY310 ALA311 HIS312 ASN313 PRO314 GLY315 ASN316 SER317 ASN318 ASN319 ALA320 THR321 PHE322 LYS323 LEU324 ILE325 LEU326 LEU327 SER328 LYS329 SER330 LEU331 GLN332 SER333 ILE334 LYS335 GLY336 ILE337 SER338 THR339 TYR340 THR341 GLU342 ALA343 PHE344 LYS345 SER346 LEU347 GLY348 LYS349 MET350 MET351 ASP352 ILE353 GLY354 ASP355 LYS356 ALA357 ILE358 GLU359 TYR360 GLU361 GLU362 PHE363 CYS364 MET365 SER366 LEU367 LYS368 SER369 LYS370 ALA371 ARG372 SER373 SER374 TRP375 LYS376 GLN377 ILE378 MET379 ASN380 LYS381 LYS382 LEU383 GLU384 PRO385 LYS386 GLN387 ILE388 ASN389 ASN390 ALA391 LEU392 VAL393 LEU394 TRP395 GLU396 GLN397 GLN398 PHE399 MET400 ILE401 ASN402 ASN403 ASP404 LEU405 ILE406 ASP407 LYS408 SER409 GLU410 LYS411 LEU412 LYS413 LEU414 PHE415 LYS416 ASN417 PHE418 CYS419 GLY420 ILE421 GLY422 LYS423 LYS425 GLN426 PHE427 LYS428 ASN429 LYS430 MET431 LEU432 GLU433 ASP434 SER438 LYS439 PRO440 LYS441 ILE442 LEU443 ASP444 PHE445 ASP446 ASP447 ALA448 ASN449 MET450 TYR451 LEU452 ALA453 SER454 LEU455 THR456 MET457 MET458 GLU459 GLN460 SER461 LYS462 LYS463 ILE464 LEU465 SER466 LYS467 SER468 ASN469 GLY470 LEU471 LYS472 PRO473 ASP474 ASN475 PHE476 ILE477 LEU478 ASN479 GLU480 PHE481 GLY482 SER483 ARG484 ILE485 LYS486 ASP487 ALA488 ASN489 LYS490 GLU491 THR492 TYR493 ASP494 ASN495 MET496 HIS497 LYS498 ILE499 PHE500 GLU501 THR502 GLY503 TYR504 TRP505 GLN506 CYS507 ILE508 SER509 ASP510 PHE511 SER512 THR513 LEU514 MET515 LYS516 ASN517 ILE518 LEU519 SER520 VAL521 SER522 GLN523 TYR524 ASN525 ARG526 HIS527 ASN528 THR529 PHE530 ARG531 ILE532 ALA533 MET534 CYS535 ALA536 ASN537 ASN538 ASN539 VAL540 PHE541 ALA542 ILE543 VAL544 PHE545 PRO546 SER547 ALA555 THR556 VAL557 VAL558 TYR559 SER560 ILE561 ILE562 VAL563 LEU564 HIS565 LYS566 GLU567 GLU568 GLU569 ASN570 ILE571 PHE572 ASN573 PRO574 GLY575 CYS576 LEU577 HIS578 GLY579 THR580 PHE581 LYS582 CYS583 MET584 ASN585 GLY586 TYR587 ILE588 SER589 ILE590 SER591 ARG592 ALA593 ILE594 ARG595 LEU596 ASP597 LYS598 GLU599 ARG600 CYS601 GLN602 ARG603 ILE604 VAL605 SER606 SER607 PRO608 GLY609 LEU610 PHE611 LEU612 THR613 THR614 CYS615 LEU616 LEU617 PHE618 LYS619 HIS620 ASP621 ASN622 PRO623 THR624 LEU625 VAL626 MET627 SER628 ASP629 ILE630 MET631 ASN632 PHE633 SER634 ILE635 TYR636 THR637 SER638 LEU639 SER640 ILE641 THR642 LYS643 SER644 VAL645 LEU646 SER647 LEU648 THR649 GLU650 PRO651 ALA652 ARG653 TYR654 MET655 ILE656 MET657 ASN658 SER659 LEU660 ALA661 ILE662 SER663 SER664 ASN665 VAL666 LYS667 ASP668 TYR669 ILE670 ALA671 GLU672 LYS673 PHE674 SER675 PRO676 TYR677 THR678 LYS679 THR680 LEU681 PHE682 SER683 VAL684 TYR685 MET686 THR687 ARG688 LEU689 ILE690 LYS691 ASN692 ALA693 CYS694 PHE695 ASP696 ALA697 TYR698 ASP699 GLN700 ARG701 GLN702 ARG703 VAL704 GLN705 LEU706 ARG707 ASP708 ILE709 ASP713 TYR714 ASP715 ILE716 THR717 GLN718 LYS719 GLY720 ILE721 LYS722 ASP723 ASN724 ARG725 GLU726 LEU727 THR728 SER729 ILE730 TRP731 PHE732 PRO733 GLY734 SER735 VAL736 THR737 LEU738 LYS739 GLU740 TYR741 LEU742 THR743 GLN744 ILE745 TYR746 LEU747 PRO748 PHE749 TYR750 PHE751 ASN752 ALA753 LYS754 GLY755 LEU756 HIS757 GLU758 LYS759 HIS760 HIS761 VAL762 MET763 VAL764 ASP765 LEU766 ALA767 LYS768 THR769 ILE770 LEU771 GLU772 ILE773 GLU774 CYS775 GLU776 GLN777 ARG778 GLU779 ASN780 ILE781 LYS782 GLU783 ILE784 TRP785 SER786 THR787 ASN788 CYS789 THR790 LYS791 GLN792 THR793 VAL794 ASN795 LEU796 LYS797 ILE798 LEU799 ILE800 HIS801 SER802 LEU803 CYS804 LYS805 ASN806 LEU807 LEU808 ALA809 ASP810 THR811 SER812 ARG813 HIS814 ASN815 HIS816 LEU817 ARG818 ASN819 ARG820 ILE821 GLU822 ASN823 ARG824 ASN825 ASN826 PHE827 ARG828 ARG829 SER830 ILE831 THR832 THR833 ILE834 SER835 THR836 PHE837 THR838 SER839 SER840 LYS841 SER842 CYS843 LEU844 LYS845 ILE846 GLY847 ASP848 PHE849 ARG850 LYS851 GLU852 LYS853 GLU854 LEU855 GLN856 SER857 VAL858 LYS859 GLN860 LYS861 LYS862 ILE863 LEU864 GLU865 VAL866 GLN867 SER868 ARG869 LYS870 MET871 ARG872 LEU873 ALA874 ASN892 TYR893 GLU894 MET895 LEU896 ARG897 ASN898 ALA899 MET900 PRO901 ASN902 TYR903 THR904 ASP905 TYR906 ILE907 SER908 THR909 LYS910 VAL911 PHE912 ASP913 ARG914 LEU915 TYR916 GLU917 LEU918 LEU919 ASP920 LYS921 LYS922 VAL923 LEU924 THR925 ASP926 LYS927 PRO928 VAL929 ILE930 GLU931 GLN932 ILE933 MET934 ASP935 MET936 MET937 ILE938 ASP939 HIS940 LYS941 LYS942 PHE943 TYR944 PHE945 THR946 PHE947 PHE948 ASN949 GLU959 ILE960 PHE961 VAL962 GLY963 GLU964 TYR965 GLU966 ALA967 LYS968 MET969 CYS970 MET971 TYR972 ALA973 VAL974 GLU975 ARG976 ILE977 ALA978 LYS979 GLU980 ARG981 CYS982 LYS983 LEU984 ASN985 PRO986 ASP987 GLU988 MET989 ILE990 SER991 GLU992 PRO993 GLY994 ASP995 GLY996 LYS997 LEU998 LYS999 VAL1000 LEU1001 GLU1002 GLN1003 LYS1004 SER1005 GLU1006 GLN1007 GLU1008 ILE1009 ARG1010 PHE1011 LEU1012 VAL1013 GLU1014 THR1015 THR1016 ARG1017 GLN1018 LYS1019 ASN1020 ARG1021 GLU1022 ILE1023 ASP1024 GLU1025 ALA1026 ILE1027 GLU1028 ALA1029 LEU1030 LEU1039 GLY1040 LYS1041 ILE1042 GLU1043 LYS1044 LEU1045 SER1046 LEU1047 GLY1048 LYS1049 ALA1050 LYS1051 GLY1052 LEU1053 LYS1054 MET1055 GLU1056 ILE1057 ASN1058 ALA1059 ASP1060 MET1061 SER1062 LYS1063 TRP1064 SER1065 ALA1066 GLN1067 ASP1068 VAL1069 PHE1070 TYR1071 LYS1072 TYR1073 PHE1074 TRP1075 LEU1076 ILE1077 ALA1078 LEU1079 ASP1080 PRO1081 ILE1082 LEU1083 TYR1084 PRO1085 GLN1086 GLU1087 LYS1088 GLU1089 ARG1090 ILE1091 LEU1092 TYR1093 PHE1094 MET1095 CYS1096 ASN1097 TYR1098 MET1099 ASP1100 LYS1101 GLU1102 LEU1103 ILE1104 LEU1105 PRO1106 ASP1107 GLU1108 LEU1109 LEU1110 PHE1111 ASN1112 LEU1113 LEU1114 ASP1115 GLN1116 LYS1117 VAL1118 ALA1119 TYR1120 GLN1121 ASN1122 ASP1123 ILE1124 ILE1125 ALA1126 THR1127 MET1128 THR1129 ASN1130 GLN1131 LEU1132 ASN1133 SER1134 ASN1135 THR1136 VAL1137 LEU1138 ILE1139 LYS1140 ARG1141 ASN1142 TRP1143 LEU1144 GLN1145 GLY1146 ASN1147 PHE1148 ASN1149 TYR1150 THR1151 SER1152 SER1153 TYR1154 VAL1155 HIS1156 SER1157 CYS1158 ALA1159 MET1160 SER1161 VAL1162 TYR1163 LYS1164 GLU1165 ILE1166 LEU1167 LYS1168 GLU1169 ALA1170 ILE1171 THR1172 LEU1173 LEU1174 ASP1175 GLY1176 SER1177 ILE1178 LEU1179 VAL1180 ASN1181 SER1182 LEU1183 VAL1184 HIS1185 SER1186 ASP1187 ASP1188 ASN1189 GLN1190 THR1191 SER1192 ILE1193 THR1194 ILE1195 VAL1196 GLN1197 ASP1198 LYS1199 MET1200 GLU1201 ASN1202 ASP1203 LYS1204 ILE1205 ILE1206 ASP1207 PHE1208 ALA1209 MET1210 LYS1211 GLU1212 PHE1213 GLU1214 ARG1215 ALA1216 CYS1217 LEU1218 THR1219 PHE1220 GLY1221 CYS1222 GLN1223 ALA1224 ASN1225 MET1226 LYS1227 LYS1228 THR1229 TYR1230 VAL1231 THR1232 ASN1233 CYS1234 ILE1235 LYS1236 GLU1237 PHE1238 VAL1239 SER1240 LEU1241 PHE1242 ASN1243 LEU1244 TYR1245 GLY1246 GLU1247 PRO1248 PHE1249 SER1250 ILE1251 TYR1252 GLY1253 ARG1254 PHE1255 LEU1256 LEU1257 THR1258 SER1259 VAL1260 GLY1261 ASP1262 CYS1263 ALA1264 TYR1265 ILE1266 GLY1267 PRO1268 TYR1269 GLU1270 ASP1271 LEU1272 ALA1273 SER1274 ARG1275 ILE1276 SER1277 SER1278 ALA1279 GLN1280 THR1281 ALA1282 ILE1283 LYS1284 HIS1285 GLY1286 CYS1287 PRO1288 PRO1289 SER1290 LEU1291 ALA1292 TRP1293 VAL1294 SER1295 ILE1296 ALA1297 ILE1298 SER1299 HIS1300 TRP1301 MET1302 THR1303 SER1304 LEU1305 THR1306 TYR1307 ASN1308 MET1309 LEU1310 PRO1311 GLY1312 GLN1313 SER1314 ASN1315 ASP1316 PRO1317 ILE1318 ASP1319 TYR1320 PHE1321 PRO1322 ALA1323 GLU1324 ASN1325 ARG1326 LYS1327 ASP1328 ILE1329 PRO1330 ILE1331 GLU1332 LEU1333 ASN1334 GLY1335 VAL1336 LEU1337 ASP1338 ALA1339 PRO1340 LEU1341 SER1342 MET1343 ILE1344 SER1345 THR1346 VAL1347 GLY1348 LEU1349 GLU1350 SER1351 GLY1352 ASN1353 LEU1354 TYR1355 PHE1356 LEU1357 ILE1358 LYS1359 LEU1360 LEU1361 SER1362 LYS1363 TYR1364 THR1365 PRO1366 VAL1367 MET1368 GLN1369 LYS1370 ARG1371 GLU1372 SER1373 VAL1374 VAL1375 ASN1376 GLN1377 ILE1378 ALA1379 GLU1380 VAL1381 LYS1382 ASN1383 TRP1384 LYS1385 VAL1386 GLU1387 ASP1388 LEU1389 THR1390 ASP1391 ASN1392 GLU1393 ILE1394 PHE1395 ARG1396 LEU1397 LYS1398 ILE1399 LEU1400 ARG1401 TYR1402 LEU1403 VAL1404 LEU1405 ASP1406 SER1425 ILE1426 LEU1427 THR1428 PRO1429 ARG1430 LYS1431 PHE1432 THR1433 GLY1436 SER1437 LEU1438 ARG1439 LYS1440 LEU1441 TYR1442 SER1443 PHE1444 SER1445 LYS1446 TYR1447 GLN1448 ASP1449 ARG1450 LEU1451 SER1452 SER1453 PRO1454 GLY1455 GLY1456 MET1457 VAL1458 GLU1459 LEU1460 PHE1461 THR1462 TYR1463 LEU1464 LEU1465 GLU1466 LYS1467 PRO1468 GLU1469 LEU1470 LEU1471 VAL1472 THR1473 LYS1474 GLY1475 GLU1476 ASP1477 MET1478 LYS1479 ASP1480 TYR1481 MET1482 GLU1483 SER1484 VAL1485 ILE1486 PHE1487 ARG1488 TYR1489 ASN1490 SER1491 LYS1492 ARG1493 PHE1494 LYS1495 GLU1496 SER1497 LEU1498 SER1499 ILE1500 GLN1501 ASN1502 PRO1503 ALA1504 GLN1505 LEU1506 PHE1507 ILE1508 GLU1509 GLN1510 ILE1511 LEU1512 PHE1513 SER1514 HIS1515 LYS1516 PRO1517 VAL1518 ILE1519 ASP1520 PHE1521 SER1522 GLY1523 ILE1524 ARG1525 ASP1526 LYS1527 TYR1528 ILE1529 ASN1530 ILE1543 LEU1544 GLY1545 LYS1546 VAL1547 THR1548 PHE1549 THR1550 GLU1551 ALA1552 TYR1553 ARG1554 LEU1555 LEU1556 MET1557 ARG1558 ASP1559 LEU1560 SER1561 SER1562 LEU1563 GLU1564 LEU1565 THR1566 ASN1567 ASP1568 ASP1569 ILE1570 GLN1571 VAL1572 ILE1573 TYR1574 SER1575 TYR1576 ILE1577 ILE1578 LEU1579 ASN1580 ASP1581 PRO1582 MET1583 MET1584 ILE1585 THR1586 ILE1587 ALA1588 ASN1589 THR1590 HIS1591 ILE1592 LEU1593 SER1594 ILE1595 TYR1596 GLY1597 SER1598 PRO1599 GLN1600 ARG1601 ARG1602 MET1603 GLY1604 MET1605 SER1606 CYS1607 SER1608 THR1609 MET1610 PRO1611 GLU1612 PHE1613 ARG1614 ASN1615 HIS1620 HIS1621 SER1622 PRO1623 ALA1624 LEU1625 VAL1626 LEU1627 ARG1628 ALA1629 TYR1630 SER1631 ASN1633 ASN1634 PRO1635 ASP1636 ILE1637 PRO1642 THR1643 GLU1644 MET1645 ALA1646 ARG1647 ASP1648 LEU1649 VAL1650 HIS1651 LEU1652 LYS1653 GLU1654 PHE1655 VAL1656 GLU1657 ASN1658 THR1659 ASN1660 LEU1661 GLU1662 GLU1663 LYS1664 MET1665 LYS1666 VAL1667 ARG1668 ILE1669 ALA1670 MET1671 ASN1672 GLU1673 ALA1674 GLU1675 LYS1676 GLY1677 GLN1678 ARG1679 ASP1680 ILE1681 VAL1682 PHE1683 GLU1684 LEU1685 LYS1686 GLU1687 MET1688 THR1689 ARG1690 PHE1691 TYR1692 GLN1693 VAL1694 CYS1695 TYR1696 GLU1697 TYR1698 VAL1699 LYS1700 SER1701 THR1702 GLU1703 HIS1704 LYS1705 ILE1706 LYS1707 VAL1708 PHE1709 ILE1710 LEU1711 PRO1712 ALA1713 LYS1714 SER1715 TYR1716 THR1717 THR1718 THR1719 ASP1720 PHE1721 CYS1722 SER1723 LEU1724 MET1725 GLN1726 GLY1727 ASN1728 LEU1729 ILE1730 LYS1731 ASP1732 LYS1733 GLU1734 TRP1735 TYR1736 THR1737 VAL1738 HIS1739 TYR1740 LEU1741 LYS1742 GLN1743 ILE1744 LEU1745
Nucleic acids
Unit 2 U1 U2 G3 G4 U5 A6 G7 U8 A9 C10 A11 C12 U13 A14 C15 U16
Unit 3 G9 C10 U11 A12 C13 C14 A15 A16
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany