5AKF - Sequence, Chains, Asymmetric and Biological Units

• Title: THE CRYSTAL STRUCTURE OF I-DMOI Q42AK120M IN COMPLEX WITH IT DNA NICKED IN THE CODING STRAND A AND IN THE PRESENCE OF 2M
• Keywords: HYDROLASE, GENE TARGETING, GENETICS, PROTEIN-DNA INTERACTION ENDONUCLEASES
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5AKF	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	HOMING ENDONUCLEASE I-DMOI	A	179	1476	0
2	Other macromolecule		B	14	289	0
3	Other macromolecule	5'-D(*GP*TP*TP*CP*CP*GP*GP*CP*GP*CP*GP)-3'	C	11	227	0
4	Other macromolecule	25MER	D	25	508	0
5	Protein	HOMING ENDONUCLEASE I-DMOI	E	176	1450	0
6	Other macromolecule		F	14	289	0
7	Other macromolecule	5'-D(*GP*TP*TP*CP*CP*GP*GP*CP*GP*CP*GP)-3'	G	11	227	0
8	Other macromolecule	25MER	H	25	508	0
9	Protein	HOMING ENDONUCLEASE I-DMOI	I	175	1444	0
10	Other macromolecule		J	14	289	0
11	Other macromolecule	5'-D(*GP*TP*TP*CP*CP*GP*GP*CP*GP*CP*GP)-3'	K	11	227	0
12	Other macromolecule	25MER	L	25	508	0
13	Ligand	HOMING ENDONUCLEASE I-DMOI	A	3	0	6
14	Ligand		B	1	0	1
15	Ligand	HOMING ENDONUCLEASE I-DMOI	E	2	0	2
16	Ligand	HOMING ENDONUCLEASE I-DMOI	I	2	0	2
17	Water			301	0	301
total				989	7442	312

Proteins

Unit 1	GLU 5 ASN 6 VAL 7 SER 8 GLY 9 ILE 10 SER 11 ALA 12 TYR 13 LEU 14 LEU 15 GLY 16 LEU 17 ILE 18 ILE 19 GLY 20 ASP 21 GLY 22 GLY 23 LEU 24 TYR 25 LYS 26 LEU 27 LYS 28 TYR 29 LYS 30 GLY 31 ASN 32 ARG 33 SER 34 GLU 35 TYR 36 ARG 37 VAL 38 VAL 39 ILE 40 THR 41 ALA 42 LYS 43 SER 44 GLU 45 ASN 46 LEU 47 ILE 48 LYS 49 GLN 50 HIS 51 ILE 52 ALA 53 PRO 54 LEU 55 MET 56 GLN 57 PHE 58 LEU 59 ILE 60 ASP 61 GLU 62 LEU 63 ASN 64 VAL 65 LYS 66 SER 67 LYS 68 ILE 69 GLN 70 ILE 71 VAL 72 LYS 73 GLY 74 ASP 75 THR 76 ARG 77 TYR 78 GLU 79 LEU 80 ARG 81 VAL 82 SER 83 SER 84 LYS 85 LYS 86 LEU 87 TYR 88 TYR 89 TYR 90 PHE 91 ALA 92 ASN 93 MET 94 LEU 95 GLU 96 ARG 97 ILE 98 ARG 99 LEU 100 PHE 101 ASN 102 MET 103 ARG 104 GLU 105 GLN 106 ILE 107 ALA 108 PHE 109 ILE 110 LYS 111 GLY 112 LEU 113 TYR 114 VAL 115 ALA 116 GLU 117 GLY 118 ASP 119 MET 120 THR 121 LEU 122 LYS 123 ARG 124 LEU 125 ARG 126 ILE 127 TRP 128 ASN 129 LYS 130 ASN 131 LYS 132 ALA 133 LEU 134 LEU 135 GLU 136 ILE 137 VAL 138 SER 139 ARG 140 TRP 141 LEU 142 ASN 143 ASN 144 LEU 145 GLY 146 VAL 147 ARG 148 ASN 149 THR 150 ILE 151 HIS 152 LEU 153 ASP 154 ASP 155 HIS 156 ARG 157 HIS 158 GLY 159 VAL 160 TYR 161 VAL 162 LEU 163 ASN 164 ILE 165 SER 166 LEU 167 ARG 168 ASP 169 ARG 170 ILE 171 LYS 172 PHE 173 VAL 174 HIS 175 THR 176 ILE 177 LEU 178 SER 179 SER 180 HIS 181 LEU 182 ASN 183
Unit 5	GLU 5 ASN 6 VAL 7 SER 8 GLY 9 ILE 10 SER 11 ALA 12 TYR 13 LEU 14 LEU 15 GLY 16 LEU 17 ILE 18 ILE 19 GLY 20 ASP 21 GLY 22 GLY 23 LEU 24 TYR 25 LYS 26 LEU 27 LYS 28 TYR 29 LYS 30 GLY 31 ASN 32 ARG 33 SER 34 GLU 35 TYR 36 ARG 37 VAL 38 VAL 39 ILE 40 THR 41 ALA 42 LYS 43 SER 44 GLU 45 ASN 46 LEU 47 ILE 48 LYS 49 GLN 50 HIS 51 ILE 52 ALA 53 PRO 54 LEU 55 MET 56 GLN 57 PHE 58 LEU 59 ILE 60 ASP 61 GLU 62 LEU 63 ASN 64 VAL 65 LYS 66 SER 67 LYS 68 ILE 69 GLN 70 ILE 71 VAL 72 LYS 73 GLY 74 ASP 75 THR 76 ARG 77 TYR 78 GLU 79 LEU 80 ARG 81 VAL 82 SER 83 SER 84 LYS 85 LYS 86 LEU 87 TYR 88 TYR 89 TYR 90 PHE 91 ALA 92 ASN 93 MET 94 LEU 95 GLU 96 ARG 97 ILE 98 ARG 99 LEU 100 PHE 101 ASN 102 MET 103 ARG 104 GLU 105 GLN 106 ILE 107 ALA 108 PHE 109 ILE 110 LYS 111 GLY 112 LEU 113 TYR 114 VAL 115 ALA 116 GLU 117 GLY 118 ASP 119 MET 120 THR 121 LEU 122 LYS 123 ARG 124 LEU 125 ARG 126 ILE 127 TRP 128 ASN 129 LYS 130 ASN 131 LYS 132 ALA 133 LEU 134 LEU 135 GLU 136 ILE 137 VAL 138 SER 139 ARG 140 TRP 141 LEU 142 ASN 143 ASN 144 LEU 145 GLY 146 VAL 147 ARG 148 ASN 149 THR 150 ILE 151 HIS 152 LEU 153 ASP 154 ASP 155 HIS 156 ARG 157 HIS 158 GLY 159 VAL 160 TYR 161 VAL 162 LEU 163 ASN 164 ILE 165 SER 166 LEU 167 ARG 168 ASP 169 ARG 170 ILE 171 LYS 172 PHE 173 VAL 174 HIS 175 THR 176 ILE 177 LEU 178 SER 179 SER 180
Unit 9	GLU 5 ASN 6 VAL 7 SER 8 GLY 9 ILE 10 SER 11 ALA 12 TYR 13 LEU 14 LEU 15 GLY 16 LEU 17 ILE 18 ILE 19 GLY 20 ASP 21 GLY 22 GLY 23 LEU 24 TYR 25 LYS 26 LEU 27 LYS 28 TYR 29 LYS 30 GLY 31 ASN 32 ARG 33 SER 34 GLU 35 TYR 36 ARG 37 VAL 38 VAL 39 ILE 40 THR 41 ALA 42 LYS 43 SER 44 GLU 45 ASN 46 LEU 47 ILE 48 LYS 49 GLN 50 HIS 51 ILE 52 ALA 53 PRO 54 LEU 55 MET 56 GLN 57 PHE 58 LEU 59 ILE 60 ASP 61 GLU 62 LEU 63 ASN 64 VAL 65 LYS 66 SER 67 LYS 68 ILE 69 GLN 70 ILE 71 VAL 72 LYS 73 GLY 74 ASP 75 THR 76 ARG 77 TYR 78 GLU 79 LEU 80 ARG 81 VAL 82 SER 83 SER 84 LYS 85 LYS 86 LEU 87 TYR 88 TYR 89 TYR 90 PHE 91 ALA 92 ASN 93 MET 94 LEU 95 GLU 96 ARG 97 ILE 98 ARG 99 LEU 100 PHE 101 ASN 102 MET 103 ARG 104 GLU 105 GLN 106 ILE 107 ALA 108 PHE 109 ILE 110 LYS 111 GLY 112 LEU 113 TYR 114 VAL 115 ALA 116 GLU 117 GLY 118 ASP 119 MET 120 THR 121 LEU 122 LYS 123 ARG 124 LEU 125 ARG 126 ILE 127 TRP 128 ASN 129 LYS 130 ASN 131 LYS 132 ALA 133 LEU 134 LEU 135 GLU 136 ILE 137 VAL 138 SER 139 ARG 140 TRP 141 LEU 142 ASN 143 ASN 144 LEU 145 GLY 146 VAL 147 ARG 148 ASN 149 THR 150 ILE 151 HIS 152 LEU 153 ASP 154 ASP 155 HIS 156 ARG 157 HIS 158 GLY 159 VAL 160 TYR 161 VAL 162 LEU 163 ASN 164 ILE 165 SER 166 LEU 167 ARG 168 ASP 169 ARG 170 ILE 171 LYS 172 PHE 173 VAL 174 HIS 175 THR 176 ILE 177 LEU 178 SER 179

Other macromolecules

Unit 2	DG 1 DC 2 DC 3 DT 4 DT 5 DG 6 DC 7 DC 8 DG 9 DG 10 DG 11 DT 12 DA 13 DA 14
Unit 3	DG 15 DT 16 DT 17 DC 18 DC 19 DG 20 DG 21 DC 22 DG 23 DC 24 DG 25
Unit 4	DC 1 DG 2 DC 3 DG 4 DC 5 DC 6 DG 7 DG 8 DA 9 DA 10 DC 11 DT 12 DT 13 DA 14 DC 15 DC 16 DC 17 DG 18 DG 19 DC 20 DA 21 DA 22 DG 23 DG 24 DC 25
Unit 6	DG 1 DC 2 DC 3 DT 4 DT 5 DG 6 DC 7 DC 8 DG 9 DG 10 DG 11 DT 12 DA 13 DA 14
Unit 7	DG 15 DT 16 DT 17 DC 18 DC 19 DG 20 DG 21 DC 22 DG 23 DC 24 DG 25
Unit 8	DC 1 DG 2 DC 3 DG 4 DC 5 DC 6 DG 7 DG 8 DA 9 DA 10 DC 11 DT 12 DT 13 DA 14 DC 15 DC 16 DC 17 DG 18 DG 19 DC 20 DA 21 DA 22 DG 23 DG 24 DC 25
Unit 10	DG 1 DC 2 DC 3 DT 4 DT 5 DG 6 DC 7 DC 8 DG 9 DG 10 DG 11 DT 12 DA 13 DA 14
Unit 11	DG 15 DT 16 DT 17 DC 18 DC 19 DG 20 DG 21 DC 22 DG 23 DC 24 DG 25
Unit 12	DC 1 DG 2 DC 3 DG 4 DC 5 DC 6 DG 7 DG 8 DA 9 DA 10 DC 11 DT 12 DT 13 DA 14 DC 15 DC 16 DC 17 DG 18 DG 19 DC 20 DA 21 DA 22 DG 23 DG 24 DC 25

Ligands

Unit 13	CL 1181 ACT 1184 MN 1185
Unit 14	CL 1015
Unit 15	CL 1181 MN 1182
Unit 16	MN 1180 CL 1181