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Sequence, Chains, Asymmetric and Biological Units

Title NOVEL INTER-SUBUNIT CONTACTS IN BARLEY STRIPE MOSAIC VIRUS R CRYO-EM
Keywords VIRUS, BSMV, HELICAL, CRYO-EM, IMAGE PROCESSING, MSA
Experiment ELECTRON MICROSCOPY
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   5A7A     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   BARLEY STRIPE MOSAIC VIRUS NARROWRNA  A 175 1432 0
2  RNA    R 3 67 0
total       178 1499 0

Proteins
Unit 1 ASN3 VAL4 SER5 LEU6 THR7 ALA8 LYS9 GLY10 GLY11 GLY12 HIS13 TYR14 ILE15 GLU16 ASP17 GLN18 TRP19 ASP20 THR21 GLN22 VAL23 VAL24 GLU25 ALA26 GLY27 VAL28 PHE29 ASP30 ASP31 TRP32 TRP33 VAL34 HIS35 VAL36 GLU37 ALA38 TRP39 ASN40 LYS41 PHE42 LEU43 ASP44 ASN45 LEU46 ARG47 GLY48 ILE49 ASN50 PHE51 SER52 VAL53 ALA54 SER55 SER56 ARG57 SER58 GLN59 VAL60 ALA61 GLU62 TYR63 LEU64 ALA65 ALA66 LEU67 ASP68 ARG69 ASP70 LEU71 PRO72 ALA73 ASP74 VAL75 ASP76 ARG77 ARG78 PHE79 ALA80 GLY81 ALA82 ARG83 GLY84 GLN85 ILE86 GLY87 SER88 PRO89 ASN90 TYR91 LEU92 PRO93 ALA94 PRO95 LYS96 PHE97 PHE98 ARG99 LEU100 ASP101 LYS102 ARG103 THR104 ILE105 ALA106 GLU107 LEU108 THR109 ARG110 LEU111 SER112 ARG113 LEU114 THR115 ASP116 GLN117 PRO118 HIS119 ASN120 ASN121 ARG122 ASP123 ILE124 GLU125 LEU126 ASN127 ARG128 ALA129 LYS130 ARG131 THR148 LEU149 ARG150 ASP151 VAL152 GLN153 PRO154 LEU155 LYS156 ASP157 SER158 ALA159 LEU160 HIS161 TYR162 GLN163 TYR164 VAL165 LEU166 ILE167 ASP168 LEU169 GLN170 SER171 ALA172 ARG173 LEU174 PRO175 VAL176 TYR177 THR178 ARG179 LYS180 THR181 PHE182 GLU183 ARG184 GLU185 LEU186 ALA187 LEU188 GLU189 TRP190 ILE191 ILE192 PRO193

Nucleic acids
Unit 2 G1 A2 A3

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany