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Sequence, Chains, Asymmetric and Biological Units

Title GH20C, BETA-HEXOSAMINIDASE FROM STREPTOCOCCUS PNEUMONIAE IN WITH NGT
Keywords HYDROLASE, BETA-HEXOSAMINIDASE, STREPTOCOCCUS PNEUMONIAE, BA PROTEINS, CARBOHYDRATE CONFORMATION, CATALYTIC DOMAIN, ENZY INHIBITORS, HOST-PATHOGEN INTERACTIONS, HYDROGEN BONDING, HYDROLYSIS, MODELS, POLYSACCHARIDES, PROTEIN BINDING, VIRUL FACTORS
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5A6A     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   N-ACETYL-BETA-D-GLUCOSAMINIDASE  A 620 4698 0
2  Protein   N-ACETYL-BETA-D-GLUCOSAMINIDASE  B 597 4410 0
3  Ligand   N-ACETYL-BETA-D-GLUCOSAMINIDASE  A 2 0 18
4  Ligand   N-ACETYL-BETA-D-GLUCOSAMINIDASE  B 1 0 14
5 Water     79 0 79
total       1299 9108 111
Proteins
Unit 1 THR5 GLY6 LEU7 SER8 LEU9 LYS10 GLN11 THR12 GLN13 ALA14 ILE15 GLU16 VAL17 LEU18 LYS19 GLY20 HIS21 ILE22 SER23 LEU24 PRO25 ASP26 VAL27 GLU28 VAL29 ALA30 VAL31 THR32 GLN33 SER34 ASP35 GLN36 ALA37 SER38 ILE39 SER40 ILE41 GLU42 GLY43 GLU44 GLY46 HIS47 TYR48 GLN49 LEU50 THR51 TYR52 ARG53 LYS54 PRO55 HIS56 GLN57 LEU58 TYR59 ARG60 ALA61 LEU62 SER63 LEU64 LEU65 VAL66 THR67 VAL68 LEU69 ALA70 GLU71 ALA72 ASP73 LYS74 VAL75 GLU76 ILE77 GLU78 GLU79 GLN80 ALA81 ALA82 TYR83 GLU84 ASP85 LEU86 ALA87 TYR88 MET89 VAL90 ASP91 CYS92 SER93 ARG94 ASN95 ALA96 VAL97 LEU98 ASN99 VAL100 ALA101 SER102 ALA103 LYS104 GLN105 MET106 ILE107 GLU108 ILE109 LEU110 ALA111 LEU112 MET113 GLY114 TYR115 SER116 THR117 PHE118 GLU119 LEU120 TYR121 MET122 GLU123 ASP124 THR125 TYR126 GLN127 ILE128 GLU129 GLY130 GLN131 PRO132 TYR133 PHE134 GLY135 TYR136 PHE137 ARG138 GLY139 ALA140 TYR141 SER142 ALA143 GLU144 GLU145 LEU146 GLN147 GLU148 ILE149 GLU150 ALA151 TYR152 ALA153 GLN154 GLN155 PHE156 ASP157 VAL158 THR159 PHE160 VAL161 PRO162 CYS163 ILE164 GLN165 THR166 LEU167 ALA168 HIS169 LEU170 SER171 ALA172 PHE173 VAL174 LYS175 TRP176 GLY177 VAL178 LYS179 GLU180 VAL181 GLN182 GLU183 LEU184 ARG185 ASP186 VAL187 GLU188 ASP189 ILE190 LEU191 LEU192 ILE193 GLY194 GLU195 GLU196 LYS197 VAL198 TYR199 ASP200 LEU201 ILE202 ASP203 GLY204 MET205 PHE206 ALA207 THR208 LEU209 SER210 LYS211 LEU212 LYS213 THR214 ARG215 LYS216 VAL217 ASN218 ILE219 GLY220 MET221 ASP222 GLU223 ALA224 HIS225 LEU226 VAL227 GLY228 LEU229 GLY230 ARG231 TYR232 LEU233 ILE234 LEU235 ASN236 GLY237 VAL238 VAL239 ASP240 ARG241 SER242 LEU243 LEU244 MET245 CYS246 GLN247 HIS248 LEU249 GLU250 ARG251 VAL252 LEU253 ASP254 ILE255 ALA256 ASP257 LYS258 TYR259 GLY260 PHE261 HIS262 CYS263 GLN264 MET265 TRP266 SER267 ASP268 MET269 PHE270 PHE271 LYS272 LEU273 MET274 SER275 ALA276 ASP277 GLY278 GLN279 TYR280 ASP281 ARG282 ASP283 VAL284 GLU285 ILE286 PRO287 GLU288 GLU289 THR290 ARG291 VAL292 TYR293 LEU294 ASP295 ARG296 LEU297 LYS298 ASP299 ARG300 VAL301 THR302 LEU303 VAL304 TYR305 TRP306 ASP307 TYR308 TYR309 GLN310 ASP311 SER312 GLU313 GLU314 LYS315 TYR316 ASN317 ARG318 ASN319 PHE320 ARG321 ASN322 HIS323 HIS324 LYS325 ILE326 SER327 HIS328 ASP329 LEU330 ALA331 PHE332 ALA333 GLY334 GLY335 ALA336 TRP337 LYS338 TRP339 ILE340 GLY341 PHE342 THR343 PRO344 HIS345 ASN346 HIS347 PHE348 SER349 ARG350 LEU351 VAL352 ALA353 ILE354 GLU355 ALA356 ASN357 LYS358 ALA359 CYS360 ARG361 ALA362 ASN363 GLN364 ILE365 LYS366 GLU367 VAL368 ILE369 VAL370 THR371 GLY372 TRP373 GLY374 ASP375 ASN376 GLY377 GLY378 GLU379 THR380 ALA381 GLN382 PHE383 SER384 ILE385 LEU386 PRO387 SER388 LEU389 GLN390 ILE391 TRP392 ALA393 GLU394 LEU395 SER396 TYR397 ARG398 ASN399 ASP400 LEU401 ASP402 GLY403 LEU404 SER405 ALA406 HIS407 PHE408 LYS409 THR410 ASN411 THR412 GLY413 LEU414 THR415 VAL416 GLU417 ASP418 PHE419 MET420 GLN421 ILE422 ASP423 LEU424 ALA425 ASN426 LEU427 LEU428 PRO429 ASP430 LEU431 PRO432 GLY433 ASN434 LEU435 SER436 GLY437 ILE438 ASN439 PRO440 ASN441 ARG442 TYR443 VAL444 PHE445 TYR446 GLN447 ASP448 ILE449 LEU450 CYS451 PRO452 ILE453 LEU454 ASP455 GLN456 HIS457 MET458 THR459 PRO460 GLU461 GLN462 ASP463 LYS464 PRO465 HIS466 PHE467 ALA468 GLN469 ALA470 ALA471 GLU472 THR473 LEU474 ALA475 ASN476 ILE477 LYS478 GLU479 LYS480 ALA481 GLY482 ASN483 TYR484 ALA485 TYR486 LEU487 PHE488 GLU489 THR490 GLN491 ALA492 GLN493 LEU494 ASN495 ALA496 ILE497 LEU498 SER499 SER500 LYS501 VAL502 ASP503 VAL504 GLY505 ARG506 ARG507 ILE508 ARG509 GLN510 ALA511 TYR512 GLN513 ALA514 ASP515 ASP516 LYS517 GLU518 SER519 LEU520 GLN521 GLN522 ILE523 ALA524 ARG525 GLN526 GLU527 LEU528 PRO529 GLU530 LEU531 ARG532 SER533 GLN534 ILE535 GLU536 ASP537 PHE538 HIS539 ALA540 LEU541 PHE542 SER543 HIS544 GLN545 TRP546 LEU547 LYS548 GLU549 ASN550 LYS551 VAL552 PHE553 GLY554 LEU555 ASP556 THR557 VAL558 ASP559 ILE560 ARG561 MET562 GLY563 GLY564 LEU565 LEU566 GLN567 ARG568 ILE569 LYS570 ARG571 ALA572 GLU573 SER574 ARG575 ILE576 GLU577 VAL578 TYR579 LEU580 ALA581 GLY582 GLN583 LEU584 ASP585 ARG586 ILE587 ASP588 GLU589 LEU590 GLU591 VAL592 GLU593 ILE594 LEU595 PRO596 PHE597 THR598 ASP599 PHE600 TYR601 ALA602 LYS604 ASP605 PHE606 ALA607 ALA608 THR609 THR610 ALA611 ASN612 GLN613 TRP614 HIS615 THR616 ILE617 ALA618 THR619 ALA620 SER621 THR622 ILE623 TYR624 THR625 THR626
Unit 2 VAL2 ARG3 PHE4 THR5 GLY6 LEU7 SER8 LEU9 LYS10 GLN11 THR12 GLN13 ALA14 ILE15 GLU16 VAL17 LEU18 LYS19 GLY20 HIS21 ILE22 SER23 LEU24 PRO25 ASP26 VAL27 GLU28 VAL29 ALA30 VAL31 THR32 GLN33 SER34 ASP35 GLN36 ALA37 SER38 ILE39 SER40 ILE41 GLU42 GLY43 GLU44 GLU45 GLY46 HIS47 TYR48 GLN49 LEU50 THR51 TYR52 ARG53 LYS54 PRO55 HIS56 GLN57 LEU58 TYR59 ARG60 ALA61 LEU62 SER63 LEU64 LEU65 VAL66 THR67 VAL68 LEU69 ALA70 GLU71 ALA72 ASP73 VAL75 GLU76 ILE77 GLU78 GLU79 GLN80 ALA81 ALA82 TYR83 GLU84 ASP85 LEU86 ALA87 TYR88 MET89 VAL90 ASP91 CYS92 SER93 ARG94 ASN95 ALA96 VAL97 LEU98 ASN99 VAL100 ALA101 SER102 ALA103 LYS104 GLN105 MET106 ILE107 GLU108 ILE109 LEU110 ALA111 LEU112 MET113 GLY114 TYR115 SER116 THR117 PHE118 GLU119 LEU120 TYR121 MET122 GLU123 ASP124 THR125 TYR126 GLN127 ILE128 GLU129 GLY130 GLN131 PRO132 TYR133 PHE134 GLY135 TYR136 PHE137 ARG138 GLY139 ALA140 TYR141 SER142 ALA143 GLU144 GLU145 LEU146 GLN147 GLU148 ILE149 GLU150 ALA151 TYR152 ALA153 GLN154 GLN155 PHE156 ASP157 VAL158 THR159 PHE160 VAL161 PRO162 CYS163 ILE164 GLN165 THR166 LEU167 ALA168 HIS169 LEU170 SER171 ALA172 PHE173 VAL174 LYS175 TRP176 GLY177 VAL178 LYS179 GLU180 VAL181 GLN182 GLU183 LEU184 ARG185 ASP186 VAL187 GLU188 ASP189 ILE190 LEU191 LEU192 ILE193 GLY194 GLU195 GLU196 LYS197 VAL198 TYR199 ASP200 LEU201 ILE202 ASP203 GLY204 MET205 PHE206 ALA207 THR208 LEU209 SER210 LYS211 LEU212 LYS213 THR214 ARG215 LYS216 VAL217 ASN218 ILE219 GLY220 MET221 ASP222 GLU223 ALA224 HIS225 LEU226 VAL227 GLY228 LEU229 GLY230 ARG231 TYR232 LEU233 ILE234 LEU235 ASN236 GLY237 VAL238 VAL239 ASP240 ARG241 SER242 LEU243 LEU244 MET245 CYS246 GLN247 HIS248 LEU249 GLU250 ARG251 VAL252 LEU253 ASP254 ILE255 ALA256 ASP257 LYS258 TYR259 GLY260 PHE261 HIS262 CYS263 GLN264 MET265 TRP266 SER267 ASP268 MET269 PHE270 THR290 ARG291 VAL292 TYR293 LEU294 ASP295 ARG296 LEU297 LYS298 ASP299 ARG300 VAL301 THR302 LEU303 VAL304 TYR305 TRP306 ASP307 TYR308 TYR309 GLN310 ASP311 SER312 GLU313 GLU314 LYS315 TYR316 ASN317 ARG318 ASN319 PHE320 ARG321 ASN322 HIS323 HIS324 LYS325 ILE326 SER327 HIS328 ASP329 LEU330 ALA331 PHE332 ALA333 GLY334 GLY335 ALA336 TRP337 LYS338 TRP339 ILE340 GLY341 PHE342 THR343 PRO344 HIS345 ASN346 HIS347 PHE348 SER349 ARG350 LEU351 VAL352 ALA353 ILE354 GLU355 ALA356 ASN357 LYS358 ALA359 CYS360 ARG361 ALA362 ASN363 GLN364 ILE365 LYS366 GLU367 VAL368 ILE369 VAL370 THR371 GLY372 TRP373 GLY374 ASP375 ASN376 GLY377 GLY378 GLU379 THR380 ALA381 GLN382 PHE383 SER384 ILE385 LEU386 PRO387 SER388 LEU389 GLN390 ILE391 TRP392 ALA393 GLU394 LEU395 SER396 TYR397 ARG398 ASN399 ASP400 LEU401 ASP402 GLY403 LEU404 SER405 ALA406 HIS407 PHE408 LYS409 THR410 ASN411 THR412 GLY413 LEU414 THR415 VAL416 GLU417 ASP418 PHE419 MET420 GLN421 ILE422 ASP423 LEU424 ALA425 ASN426 LEU427 LEU428 PRO429 ASP430 LEU431 ASN434 LEU435 SER436 GLY437 ILE438 ASN439 PRO440 ASN441 ARG442 TYR443 VAL444 PHE445 TYR446 GLN447 ASP448 ILE449 LEU450 CYS451 PRO452 ILE453 LEU454 ASP455 GLN456 HIS457 MET458 THR459 PRO460 GLU461 GLN462 ASP463 LYS464 PRO465 HIS466 PHE467 ALA468 GLN469 ALA470 ALA471 GLU472 THR473 LEU474 ALA475 ASN476 ILE477 LYS478 GLU479 LYS480 ALA481 GLY482 ASN483 TYR484 ALA485 TYR486 LEU487 PHE488 GLU489 THR490 GLN491 ALA492 GLN493 LEU494 ASN495 ALA496 ILE497 LEU498 SER499 SER500 LYS501 VAL502 ASP503 VAL504 GLY505 ARG506 ARG507 ILE508 ARG509 GLN510 ALA511 TYR512 GLN513 ALA514 ASP515 ASP516 LYS517 GLU518 SER519 LEU520 GLN521 GLN522 ILE523 ALA524 ARG525 GLN526 GLU527 LEU528 PRO529 GLU530 LEU531 ARG532 SER533 GLN534 ILE535 GLU536 ASP537 PHE538 HIS539 ALA540 LEU541 PHE542 SER543 HIS544 GLN545 TRP546 LEU547 LYS548 GLU549 ASN550 LYS551 VAL552 PHE553 GLY554 LEU555 ASP556 THR557 VAL558 ASP559 ILE560 ARG561 MET562 GLY563 GLY564 LEU565 LEU566 GLN567 ARG568 ILE569 LYS570 ARG571 ALA572 GLU573 SER574 ARG575 ILE576 GLU577 VAL578 TYR579 LEU580 ALA581 GLY582 GLN583 LEU584 ASP585 ARG586 ILE587 ASP588 GLU589 LEU590 GLU591 VAL592 GLU593 ILE594 LEU595 PRO596 PHE597 THR598 ASP599 PHE606 ALA607 ALA608 THR609 THR610 ALA611 ASN612 GLN613 TRP614 HIS615 THR616 ILE617 ALA618 THR619 ALA620 SER621 THR622 ILE623 TYR624 THR625 THR626
Ligands
Unit 3 EDO1627 NGT1628
Unit 4 NGT1627
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany