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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF BACTERIOPHAGE SPP1 HEAD-TO-TAIL INTERFACE FILLE AND TAPE MEASURE PROTEIN
Keywords VIRAL PROTEIN, TAILED BACTERIOPHAGE, SIPHOVIRIDAE, SPP1, VIR ASSEMBLY, HEAD-TO-TAIL INTERFACE, DNA GATEKEEPER, ALLOSTERI MECHANISM, CONCERTED REORGANISATION, DIAPHRAGM GATING
Experiment ELECTRON MICROSCOPY
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   5A20     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PORTAL PROTEIN  A 440 3573 0
2  Protein   PORTAL PROTEIN  B 440 3573 0
3  Protein   15 PROTEIN  C 99 790 0
4  Protein   15 PROTEIN  D 99 790 0
5  Protein   HEAD COMPLETION PROTEIN GP16  E 109 891 0
6  Protein   HEAD COMPLETION PROTEIN GP16  F 109 891 0
7  Protein   TAIL-TO-HEAD JOINING PROTEIN GP17  G 133 1047 0
8  Protein   MAJOR TAIL PROTEIN GP17.1  H 161 1244 0
total       1590 12799 0
Proteins
Unit 1 PRO29 ASP30 THR31 THR32 MET33 ILE34 GLN35 LYS36 LEU37 ILE38 ASP39 GLU40 HIS41 ASN42 PRO43 GLU44 PRO45 LEU46 LEU47 LYS48 GLY49 VAL50 ARG51 TYR52 TYR53 MET54 CYS55 GLU56 ASN57 ASP58 ILE59 GLU60 LYS61 LYS62 ARG63 ARG64 THR65 TYR66 TYR67 ASP68 ALA69 ALA70 GLY71 GLN72 GLN73 LEU74 VAL75 ASP76 ASP77 THR78 LYS79 THR80 ASN81 ASN82 ARG83 THR84 SER85 HIS86 ALA87 TRP88 HIS89 LYS90 LEU91 PHE92 VAL93 ASP94 GLN95 LYS96 THR97 GLN98 TYR99 LEU100 VAL101 GLY102 GLU103 PRO104 VAL105 THR106 PHE107 THR108 SER109 ASP110 ASN111 LYS112 THR113 LEU114 LEU115 GLU116 TYR117 VAL118 ASN119 GLU120 LEU121 ALA122 ASP123 ASP124 ASP125 PHE126 ASP127 ASP128 ILE129 LEU130 ASN131 GLU132 THR133 VAL134 LYS135 ASN136 MET137 SER138 ASN139 LYS140 GLY141 ILE142 GLU143 TYR144 TRP145 HIS146 PRO147 PHE148 VAL149 ASP150 GLU151 GLU152 GLY153 GLU154 PHE155 ASP156 TYR157 VAL158 ILE159 PHE160 PRO161 ALA162 GLU163 GLU164 MET165 ILE166 VAL167 VAL168 TYR169 LYS170 ASP171 ASN172 THR173 ARG174 ARG175 ASP176 ILE177 LEU178 PHE179 ALA180 LEU181 ARG182 TYR183 TYR184 SER185 TYR186 LYS187 GLY188 ILE189 MET190 GLY191 GLU192 GLU193 THR194 GLN195 LYS196 ALA197 GLU198 LEU199 TYR200 THR201 ASP202 THR203 HIS204 VAL205 TYR206 TYR207 TYR208 GLU209 LYS210 ILE211 ASP212 GLY213 VAL214 TYR215 GLN216 MET217 ASP218 TYR219 SER220 TYR221 GLY222 GLU223 ASN224 ASN225 PRO226 ARG227 PRO228 HIS229 MET230 THR231 LYS232 GLY233 GLY234 GLN235 ALA236 ILE237 GLY238 TRP239 GLY240 ARG241 VAL242 PRO243 ILE244 ILE245 PRO246 PHE247 LYS248 ASN249 ASN250 GLU251 GLU252 MET253 VAL254 SER255 ASP256 LEU257 LYS258 PHE259 TYR260 LYS261 ASP262 LEU263 ILE264 ASP265 ASN266 TYR267 ASP268 SER269 ILE270 THR271 SER272 SER273 THR274 MET275 ASP276 SER277 PHE278 SER279 ASP280 PHE281 GLN282 GLN283 ILE284 VAL285 TYR286 VAL287 LEU288 LYS289 ASN290 TYR291 ASP292 GLY293 GLU294 ASN295 PRO296 LYS297 GLU298 PHE299 THR300 ALA301 ASN302 LEU303 ARG304 TYR305 HIS306 SER307 VAL308 ILE309 LYS310 VAL311 SER312 GLY313 ASP314 GLY315 GLY316 VAL317 ASP318 THR319 LEU320 ARG321 ALA322 GLU323 ILE324 PRO325 VAL326 ASP327 SER328 ALA329 ALA330 LYS331 GLU332 LEU333 GLU334 ARG335 ILE336 GLN337 ASP338 GLU339 LEU340 TYR341 LYS342 SER343 ALA344 GLN345 ALA346 VAL347 ASP348 ASN349 SER350 PRO351 GLU352 THR353 ILE354 GLY355 GLY356 GLY357 ALA358 THR359 GLY360 PRO361 ALA362 LEU363 GLU364 LYS365 LEU366 TYR367 ALA368 LEU369 LEU370 ASP371 LEU372 LYS373 ALA374 ASN375 MET376 ALA377 GLU378 ARG379 LYS380 ILE381 ARG382 ALA383 GLY384 LEU385 ARG386 LEU387 PHE388 PHE389 TRP390 PHE391 PHE392 ALA393 GLU394 TYR395 LEU396 ARG397 ASN398 THR399 GLY400 LYS401 GLY402 ASP403 PHE404 ASN405 PRO406 ASP407 LYS408 GLU409 LEU410 THR411 MET412 THR413 PHE414 THR415 ARG416 THR417 ARG418 ILE419 GLN420 ASN421 ASP422 SER423 GLU424 ILE425 VAL426 GLN427 SER428 LEU429 VAL430 GLN431 GLY432 VAL433 THR434 GLY435 GLY436 ILE437 MET438 SER439 LYS440 GLU441 THR442 ALA443 VAL444 ALA445 ARG446 ASN447 PRO448 PHE449 VAL450 GLN451 ASP452 PRO453 GLU454 GLU455 GLU456 LEU457 ALA458 ARG459 ILE460 GLU461 GLU462 GLU463 MET464 ASN465 GLN466 TYR467 ALA468
Unit 2 PRO29 ASP30 THR31 THR32 MET33 ILE34 GLN35 LYS36 LEU37 ILE38 ASP39 GLU40 HIS41 ASN42 PRO43 GLU44 PRO45 LEU46 LEU47 LYS48 GLY49 VAL50 ARG51 TYR52 TYR53 MET54 CYS55 GLU56 ASN57 ASP58 ILE59 GLU60 LYS61 LYS62 ARG63 ARG64 THR65 TYR66 TYR67 ASP68 ALA69 ALA70 GLY71 GLN72 GLN73 LEU74 VAL75 ASP76 ASP77 THR78 LYS79 THR80 ASN81 ASN82 ARG83 THR84 SER85 HIS86 ALA87 TRP88 HIS89 LYS90 LEU91 PHE92 VAL93 ASP94 GLN95 LYS96 THR97 GLN98 TYR99 LEU100 VAL101 GLY102 GLU103 PRO104 VAL105 THR106 PHE107 THR108 SER109 ASP110 ASN111 LYS112 THR113 LEU114 LEU115 GLU116 TYR117 VAL118 ASN119 GLU120 LEU121 ALA122 ASP123 ASP124 ASP125 PHE126 ASP127 ASP128 ILE129 LEU130 ASN131 GLU132 THR133 VAL134 LYS135 ASN136 MET137 SER138 ASN139 LYS140 GLY141 ILE142 GLU143 TYR144 TRP145 HIS146 PRO147 PHE148 VAL149 ASP150 GLU151 GLU152 GLY153 GLU154 PHE155 ASP156 TYR157 VAL158 ILE159 PHE160 PRO161 ALA162 GLU163 GLU164 MET165 ILE166 VAL167 VAL168 TYR169 LYS170 ASP171 ASN172 THR173 ARG174 ARG175 ASP176 ILE177 LEU178 PHE179 ALA180 LEU181 ARG182 TYR183 TYR184 SER185 TYR186 LYS187 GLY188 ILE189 MET190 GLY191 GLU192 GLU193 THR194 GLN195 LYS196 ALA197 GLU198 LEU199 TYR200 THR201 ASP202 THR203 HIS204 VAL205 TYR206 TYR207 TYR208 GLU209 LYS210 ILE211 ASP212 GLY213 VAL214 TYR215 GLN216 MET217 ASP218 TYR219 SER220 TYR221 GLY222 GLU223 ASN224 ASN225 PRO226 ARG227 PRO228 HIS229 MET230 THR231 LYS232 GLY233 GLY234 GLN235 ALA236 ILE237 GLY238 TRP239 GLY240 ARG241 VAL242 PRO243 ILE244 ILE245 PRO246 PHE247 LYS248 ASN249 ASN250 GLU251 GLU252 MET253 VAL254 SER255 ASP256 LEU257 LYS258 PHE259 TYR260 LYS261 ASP262 LEU263 ILE264 ASP265 ASN266 TYR267 ASP268 SER269 ILE270 THR271 SER272 SER273 THR274 MET275 ASP276 SER277 PHE278 SER279 ASP280 PHE281 GLN282 GLN283 ILE284 VAL285 TYR286 VAL287 LEU288 LYS289 ASN290 TYR291 ASP292 GLY293 GLU294 ASN295 PRO296 LYS297 GLU298 PHE299 THR300 ALA301 ASN302 LEU303 ARG304 TYR305 HIS306 SER307 VAL308 ILE309 LYS310 VAL311 SER312 GLY313 ASP314 GLY315 GLY316 VAL317 ASP318 THR319 LEU320 ARG321 ALA322 GLU323 ILE324 PRO325 VAL326 ASP327 SER328 ALA329 ALA330 LYS331 GLU332 LEU333 GLU334 ARG335 ILE336 GLN337 ASP338 GLU339 LEU340 TYR341 LYS342 SER343 ALA344 GLN345 ALA346 VAL347 ASP348 ASN349 SER350 PRO351 GLU352 THR353 ILE354 GLY355 GLY356 GLY357 ALA358 THR359 GLY360 PRO361 ALA362 LEU363 GLU364 LYS365 LEU366 TYR367 ALA368 LEU369 LEU370 ASP371 LEU372 LYS373 ALA374 ASN375 MET376 ALA377 GLU378 ARG379 LYS380 ILE381 ARG382 ALA383 GLY384 LEU385 ARG386 LEU387 PHE388 PHE389 TRP390 PHE391 PHE392 ALA393 GLU394 TYR395 LEU396 ARG397 ASN398 THR399 GLY400 LYS401 GLY402 ASP403 PHE404 ASN405 PRO406 ASP407 LYS408 GLU409 LEU410 THR411 MET412 THR413 PHE414 THR415 ARG416 THR417 ARG418 ILE419 GLN420 ASN421 ASP422 SER423 GLU424 ILE425 VAL426 GLN427 SER428 LEU429 VAL430 GLN431 GLY432 VAL433 THR434 GLY435 GLY436 ILE437 MET438 SER439 LYS440 GLU441 THR442 ALA443 VAL444 ALA445 ARG446 ASN447 PRO448 PHE449 VAL450 GLN451 ASP452 PRO453 GLU454 GLU455 GLU456 LEU457 ALA458 ARG459 ILE460 GLU461 GLU462 GLU463 MET464 ASN465 GLN466 TYR467 ALA468
Unit 3 GLN4 ARG5 VAL6 LYS7 ARG8 LEU9 LEU10 SER11 ILE12 THR13 ASN14 ASP15 LYS16 HIS17 ASP18 GLU19 TYR20 LEU21 THR22 GLU23 MET24 VAL25 PRO26 LEU27 LEU28 VAL29 GLU30 PHE31 ALA32 LYS33 ASP34 GLU35 CYS36 HIS37 ASN38 PRO39 PHE40 ILE41 ASP42 LYS43 ASP44 GLY45 ASN46 GLU47 SER48 ILE49 PRO50 SER51 GLY52 VAL53 LEU54 ILE55 PHE56 VAL57 ALA58 LYS59 ALA60 ALA61 GLN62 PHE63 TYR64 MET65 THR66 ASN67 ALA68 GLY69 LEU70 THR71 GLY72 ARG73 SER74 MET75 ASP76 THR77 VAL78 SER79 TYR80 ASN81 PHE82 ALA83 THR84 GLU85 ILE86 PRO87 SER88 THR89 ILE90 LEU91 LYS92 LYS93 LEU94 ASN95 PRO96 TYR97 ARG98 LYS99 MET100 ALA101 ARG102
Unit 4 GLN4 ARG5 VAL6 LYS7 ARG8 LEU9 LEU10 SER11 ILE12 THR13 ASN14 ASP15 LYS16 HIS17 ASP18 GLU19 TYR20 LEU21 THR22 GLU23 MET24 VAL25 PRO26 LEU27 LEU28 VAL29 GLU30 PHE31 ALA32 LYS33 ASP34 GLU35 CYS36 HIS37 ASN38 PRO39 PHE40 ILE41 ASP42 LYS43 ASP44 GLY45 ASN46 GLU47 SER48 ILE49 PRO50 SER51 GLY52 VAL53 LEU54 ILE55 PHE56 VAL57 ALA58 LYS59 ALA60 ALA61 GLN62 PHE63 TYR64 MET65 THR66 ASN67 ALA68 GLY69 LEU70 THR71 GLY72 ARG73 SER74 MET75 ASP76 THR77 VAL78 SER79 TYR80 ASN81 PHE82 ALA83 THR84 GLU85 ILE86 PRO87 SER88 THR89 ILE90 LEU91 LYS92 LYS93 LEU94 ASN95 PRO96 TYR97 ARG98 LYS99 MET100 ALA101 ARG102
Unit 5 MET1 TYR2 GLU3 GLU4 PHE5 ARG6 ASP7 VAL8 ILE9 THR10 PHE11 GLN12 SER13 TYR14 VAL15 GLU16 GLN17 SER18 ASN19 GLY20 GLU21 GLY22 GLY23 LYS24 THR25 TYR26 LYS27 TRP28 VAL29 ASP30 GLU31 PHE32 THR33 ALA34 ALA35 ALA36 HIS37 VAL38 GLN39 PRO40 ILE41 SER42 GLN43 GLU44 GLU45 TYR46 TYR47 LYS48 ALA49 GLN50 GLN51 LEU52 GLN53 THR54 PRO55 ILE56 GLY57 TYR58 ASN59 ILE60 TYR61 THR62 PRO63 TYR64 ASP65 ASP66 ARG67 ILE68 ASP69 LYS70 LYS71 MET72 ARG73 VAL74 ILE75 TYR76 ARG77 GLY78 LYS79 ILE80 VAL81 THR82 PHE83 ILE84 GLY85 ASP86 PRO87 VAL88 ASP89 LEU90 SER91 GLY92 LEU93 GLN94 GLU95 ILE96 THR97 ARG98 ILE99 LYS100 GLY101 LYS102 GLU103 ASP104 GLY105 ALA106 TYR107 VAL108 GLY109
Unit 6 MET1 TYR2 GLU3 GLU4 PHE5 ARG6 ASP7 VAL8 ILE9 THR10 PHE11 GLN12 SER13 TYR14 VAL15 GLU16 GLN17 SER18 ASN19 GLY20 GLU21 GLY22 GLY23 LYS24 THR25 TYR26 LYS27 TRP28 VAL29 ASP30 GLU31 PHE32 THR33 ALA34 ALA35 ALA36 HIS37 VAL38 GLN39 PRO40 ILE41 SER42 GLN43 GLU44 GLU45 TYR46 TYR47 LYS48 ALA49 GLN50 GLN51 LEU52 GLN53 THR54 PRO55 ILE56 GLY57 TYR58 ASN59 ILE60 TYR61 THR62 PRO63 TYR64 ASP65 ASP66 ARG67 ILE68 ASP69 LYS70 LYS71 MET72 ARG73 VAL74 ILE75 TYR76 ARG77 GLY78 LYS79 ILE80 VAL81 THR82 PHE83 ILE84 GLY85 ASP86 PRO87 VAL88 ASP89 LEU90 SER91 GLY92 LEU93 GLN94 GLU95 ILE96 THR97 ARG98 ILE99 LYS100 GLY101 LYS102 GLU103 ASP104 GLY105 ALA106 TYR107 VAL108 GLY109
Unit 7 THR2 TRP3 LYS4 LEU5 ALA6 SER7 ARG8 ALA9 LEU10 GLN11 LYS12 ALA13 THR14 VAL15 GLU16 ASN17 LEU18 GLU19 SER20 TYR21 GLN22 PRO23 LEU24 MET25 GLU26 MET27 VAL28 ASN29 GLN30 VAL31 THR32 GLU33 SER34 PRO35 GLY36 LYS37 ASP38 ASP39 PRO40 TYR41 PRO42 TYR43 VAL44 VAL45 ILE46 GLY47 ASP48 GLN49 SER50 SER51 THR52 PRO53 PHE54 GLU55 THR56 LYS57 SER58 SER59 PHE60 GLY61 GLU62 ASN63 ILE64 THR65 MET66 ASP67 PHE68 HIS69 VAL70 TRP71 GLY72 GLY73 THR74 THR75 ARG76 ALA77 GLU78 ALA79 GLN80 ASP81 ILE82 SER83 SER84 ARG85 VAL86 LEU87 GLU88 ALA89 LEU90 THR91 TYR92 LYS93 PRO94 LEU95 MET96 PHE97 GLU98 GLY99 PHE100 THR101 PHE102 VAL103 ALA104 LYS105 LYS106 LEU107 VAL108 LEU109 ALA110 GLN111 VAL112 ILE113 THR114 ASP115 THR116 ASP117 GLY118 VAL119 THR120 LYS121 HIS122 GLY123 ILE124 ILE125 LYS126 VAL127 ARG128 PHE129 THR130 ILE131 ASN132 ASN133 ASN134
Unit 8 GLN9 ASP10 VAL11 LYS12 TYR13 LEU14 PHE15 GLN16 SER17 ILE18 ASP19 ALA20 ALA21 THR22 GLY23 SER24 ALA25 PRO26 LEU27 PHE28 PRO29 ALA30 TYR31 GLN32 THR33 ASP34 GLY35 SER36 VAL37 SER38 GLY39 GLU40 ARG41 GLU42 LEU43 PHE44 ASP45 GLU46 GLN47 THR48 LYS49 ASN50 GLY51 ARG52 ILE53 LEU54 GLY55 PRO56 GLY57 SER58 VAL59 ALA60 ASP61 SER62 GLY63 GLU64 VAL65 THR66 TYR67 TYR68 GLY69 LYS70 ARG71 GLY72 ASP73 ALA74 GLY75 GLN76 LYS77 ALA78 ILE79 GLU80 ASP81 ALA82 TYR83 GLN84 ASN85 GLY86 LYS87 GLN88 ILE89 LYS90 PHE91 TRP92 ARG93 VAL94 ASP95 THR96 VAL97 LYS98 ASN99 GLU100 ASN101 ASP102 LYS103 TYR104 ASP105 ALA106 GLN107 PHE108 GLY109 PHE110 ALA111 TYR112 ILE113 GLU114 SER115 ARG116 GLU117 TYR118 SER119 ASP120 GLY121 VAL122 GLU123 GLY124 ALA125 VAL126 GLU127 ILE128 SER129 ILE130 SER131 LEU132 GLN133 VAL134 ILE135 GLY136 GLU137 LEU138 LYS139 ASN140 GLY141 GLU142 ILE143 ASP144 THR145 LEU146 PRO147 GLU148 GLU149 ILE150 VAL151 ASN152 VAL153 SER154 LYS155 GLY156 GLY157 TYR158 ASP159 PHE160 GLN161 GLN162 PRO163 GLY164 GLN165 THR166 THR167 GLY168 GLU169
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany