5A0T - Sequence, Chains, Asymmetric and Biological Units

• Title: CATALYSIS AND 5' END SENSING BY RIBONUCLEASE RNASE J OF THE METALLO-BETA-LACTAMASE FAMILY
• Keywords: HYDROLASE-RNA COMPLEX, RIBONUCLEASE, RNASE J, ENDONUCLEASE, EXONUCLEASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	5A0T	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	RIBONUCLEASE J	A	454	3482	0
2	Protein	RIBONUCLEASE J	B	451	3468	0
3	DNA/RNA		E	6	108	0
4	DNA/RNA		F	6	108	0
5	Ligand	RIBONUCLEASE J	A	3	0	9
6	Ligand	RIBONUCLEASE J	B	3	0	9
7	Water			558	0	558
total				1481	7166	576

Proteins

Unit 1

SER 2 HIS 3 PRO 4 HIS 5 PRO 6 GLU 7 LEU 8 GLY 9 ARG 10 PRO 11 PRO 12 ALA 13 LEU 14 PRO 15 LYS 16 GLY 17 GLY 18 LEU 19 ARG 20 VAL 21 THR 22 PRO 23 LEU 24 GLY 25 GLY 26 LEU 27 GLY 28 GLU 29 ILE 30 GLY 31 ARG 32 ASN 33 MET 34 THR 35 VAL 36 PHE 37 GLU 38 TYR 39 GLY 40 GLY 41 ARG 42 LEU 43 LEU 44 ILE 45 VAL 46 ASP 47 CYS 48 GLY 49 VAL 50 LEU 51 PHE 52 PRO 53 GLU 54 GLU 55 GLU 56 GLN 57 PRO 58 GLY 59 ILE 60 ASP 61 LEU 62 ILE 63 LEU 64 PRO 65 ASP 66 PHE 67 THR 68 SER 69 ILE 70 ARG 71 ASP 72 ARG 73 LEU 74 ASP 75 ASP 76 ILE 77 GLU 78 GLY 79 ILE 80 VAL 81 LEU 82 THR 83 HIS 84 GLY 85 HIS 86 GLU 87 ASP 88 HIS 89 ILE 90 GLY 91 GLY 92 VAL 93 PRO 94 PHE 95 LEU 96 LEU 97 ARG 98 GLU 99 LYS 100 PRO 101 ASP 102 ILE 103 PRO 104 LEU 105 ILE 106 GLY 107 SER 108 LYS 109 LEU 110 THR 111 LEU 112 ALA 113 LEU 114 ILE 115 GLU 116 ALA 117 LYS 118 LEU 119 GLN 120 GLU 121 HIS 122 ARG 123 ILE 124 ARG 125 PRO 126 TYR 127 THR 128 LEU 129 GLU 130 VAL 131 ALA 132 GLU 133 GLY 134 HIS 135 ARG 136 GLU 137 ARG 138 VAL 139 GLY 140 PRO 141 PHE 142 ASP 143 CYS 144 GLU 145 PHE 146 VAL 147 ALA 148 VAL 149 ASN 150 HIS 151 SER 152 ILE 153 PRO 154 ASP 155 ALA 156 LEU 157 ALA 158 VAL 159 ALA 160 ILE 161 ARG 162 THR 163 PRO 164 ALA 165 GLY 166 MET 167 VAL 168 VAL 169 HIS 170 THR 171 GLY 172 ASP 173 PHE 174 LYS 175 MET 176 ASP 177 GLN 178 LEU 179 PRO 180 LEU 181 ASP 182 GLY 183 ARG 184 LEU 185 THR 186 ASP 187 LEU 188 HIS 189 ALA 190 PHE 191 ALA 192 ARG 193 LEU 194 SER 195 GLU 196 GLU 197 GLY 198 ILE 199 ASP 200 LEU 201 LEU 202 LEU 203 ALA 204 ASP 205 SER 206 THR 207 ASN 208 ALA 209 GLU 210 VAL 211 PRO 212 GLY 213 PHE 214 VAL 215 PRO 216 PRO 217 GLU 218 ARG 219 ASP 220 ILE 221 SER 222 ASN 223 VAL 224 LEU 225 ARG 226 GLN 227 VAL 228 PHE 229 ALA 230 ASN 231 ALA 232 ARG 233 LYS 234 ARG 235 ILE 236 ILE 237 VAL 238 ALA 239 SER 240 PHE 241 ALA 242 SER 243 HIS 244 VAL 245 HIS 246 ARG 247 ILE 248 GLN 249 GLN 250 ILE 251 LEU 252 ASP 253 ALA 254 ALA 255 HIS 256 GLU 257 TYR 258 GLY 259 ARG 260 ARG 261 VAL 262 ALA 263 PHE 264 VAL 265 GLY 266 ARG 267 SER 268 MET 269 VAL 270 ARG 271 ASN 272 MET 273 GLY 274 ILE 275 ALA 276 ARG 277 ASP 278 LEU 279 GLY 280 TYR 281 LEU 282 LYS 283 VAL 284 PRO 285 PRO 286 GLY 287 LEU 288 VAL 289 VAL 290 ASP 291 VAL 292 LYS 293 THR 294 LEU 295 ASP 296 ASP 297 LEU 298 PRO 299 ASP 300 SER 301 GLU 302 VAL 303 VAL 304 LEU 305 VAL 306 CYS 307 THR 308 GLY 309 SER 310 GLN 311 GLY 312 GLU 313 PRO 314 MET 315 ALA 316 ALA 317 LEU 318 SER 319 ARG 320 MET 321 ALA 322 ASN 323 ARG 324 ASP 325 HIS 326 GLN 327 ILE 328 ARG 329 ILE 330 VAL 331 ASN 332 GLY 333 ASP 334 THR 335 VAL 336 ILE 337 LEU 338 ALA 339 SER 340 SER 341 LEU 342 ILE 343 PRO 344 GLY 345 ASN 346 GLU 347 ASN 348 ALA 349 VAL 350 TYR 351 ARG 352 VAL 353 ILE 354 ASN 355 GLY 356 LEU 357 THR 358 ARG 359 TRP 360 GLY 361 ALA 362 ASN 363 VAL 364 VAL 365 HIS 366 LYS 367 GLY 368 ASN 369 ALA 370 LYS 371 VAL 372 HIS 373 VAL 374 SER 375 GLY 376 HIS 377 ALA 378 SER 379 ALA 380 GLY 381 GLU 382 LEU 383 LEU 384 TYR 385 PHE 386 TYR 387 ASN 388 ILE 389 CYS 390 ARG 391 PRO 392 LYS 393 ASN 394 LEU 395 MET 396 PRO 397 VAL 398 HIS 399 GLY 400 GLU 401 TRP 402 ARG 403 HIS 404 LEU 405 ARG 406 ALA 407 ASN 408 ALA 409 GLU 410 LEU 411 GLY 412 ALA 413 LEU 414 THR 415 GLY 416 VAL 417 PRO 418 HIS 419 ASP 420 ARG 421 ILE 422 VAL 423 ILE 424 ALA 425 GLU 426 ASP 427 GLY 428 VAL 429 VAL 430 VAL 431 ASP 432 LEU 433 VAL 434 GLU 435 GLY 436 LYS 437 ALA 438 LYS 439 ILE 440 THR 441 GLY 442 LYS 443 VAL 444 GLN 445 ALA 446 GLY 447 TYR 448 VAL 449 TYR 450 VAL 451 ASP 452 GLY 453 LEU 454 SER 455

Unit 2

SER 2 HIS 3 PRO 4 HIS 5 PRO 6 GLU 7 LEU 8 GLY 9 ARG 10 PRO 11 PRO 12 ALA 13 LEU 14 PRO 15 LYS 16 GLY 17 GLY 18 LEU 19 ARG 20 VAL 21 THR 22 PRO 23 LEU 24 GLY 25 GLY 26 LEU 27 GLY 28 GLU 29 ILE 30 GLY 31 ARG 32 ASN 33 MET 34 THR 35 VAL 36 PHE 37 GLU 38 TYR 39 GLY 40 GLY 41 ARG 42 LEU 43 LEU 44 ILE 45 VAL 46 ASP 47 CYS 48 GLY 49 VAL 50 LEU 51 PHE 52 PRO 53 GLU 54 GLU 55 GLU 56 GLN 57 PRO 58 GLY 59 ILE 60 ASP 61 LEU 62 ILE 63 LEU 64 PRO 65 ASP 66 PHE 67 THR 68 SER 69 ILE 70 ARG 71 ASP 72 ARG 73 LEU 74 ASP 75 ASP 76 ILE 77 GLU 78 GLY 79 ILE 80 VAL 81 LEU 82 THR 83 HIS 84 GLY 85 HIS 86 GLU 87 ASP 88 HIS 89 ILE 90 GLY 91 GLY 92 VAL 93 PRO 94 PHE 95 LEU 96 LEU 97 ARG 98 GLU 99 LYS 100 PRO 101 ASP 102 ILE 103 PRO 104 LEU 105 ILE 106 GLY 107 SER 108 LYS 109 LEU 110 THR 111 LEU 112 ALA 113 LEU 114 ILE 115 GLU 116 ALA 117 LYS 118 LEU 119 GLN 120 GLU 121 HIS 122 ARG 123 ILE 124 ARG 125 PRO 126 TYR 127 THR 128 LEU 129 GLU 130 VAL 131 ALA 132 GLU 133 GLY 134 HIS 135 ARG 136 GLU 137 ARG 138 VAL 139 GLY 140 PRO 141 PHE 142 ASP 143 CYS 144 GLU 145 PHE 146 VAL 147 ALA 148 VAL 149 ASN 150 HIS 151 SER 152 ILE 153 PRO 154 ASP 155 ALA 156 LEU 157 ALA 158 VAL 159 ALA 160 ILE 161 ARG 162 THR 163 PRO 164 ALA 165 GLY 166 MET 167 VAL 168 VAL 169 HIS 170 THR 171 GLY 172 ASP 173 PHE 174 LYS 175 MET 176 ASP 177 GLN 178 LEU 179 PRO 180 LEU 181 ASP 182 GLY 183 ARG 184 LEU 185 THR 186 ASP 187 LEU 188 HIS 189 ALA 190 PHE 191 ALA 192 ARG 193 LEU 194 SER 195 GLU 196 GLU 197 GLY 198 ILE 199 ASP 200 LEU 201 LEU 202 LEU 203 ALA 204 ASP 205 SER 206 THR 207 ASN 208 ALA 209 GLU 210 VAL 211 PRO 212 GLY 213 PHE 214 VAL 215 PRO 216 PRO 217 GLU 218 ARG 219 ASP 220 ILE 221 SER 222 ASN 223 VAL 224 LEU 225 ARG 226 GLN 227 VAL 228 PHE 229 ALA 230 ASN 231 ALA 232 ARG 233 LYS 234 ARG 235 ILE 236 ILE 237 VAL 238 ALA 239 SER 240 PHE 241 ALA 242 SER 243 HIS 244 VAL 245 HIS 246 ARG 247 ILE 248 GLN 249 GLN 250 ILE 251 LEU 252 ASP 253 ALA 254 ALA 255 HIS 256 GLU 257 TYR 258 GLY 259 ARG 260 ARG 261 VAL 262 ALA 263 PHE 264 VAL 265 GLY 266 ARG 267 SER 268 MET 269 VAL 270 ARG 271 ASN 272 MET 273 GLY 274 ILE 275 ALA 276 ARG 277 ASP 278 LEU 279 GLY 280 TYR 281 LEU 282 LYS 283 VAL 284 PRO 285 PRO 286 GLY 287 LEU 288 VAL 289 VAL 290 ASP 291 VAL 292 LYS 293 THR 294 LEU 295 ASP 296 ASP 297 LEU 298 PRO 299 ASP 300 SER 301 GLU 302 VAL 303 VAL 304 LEU 305 VAL 306 CYS 307 THR 308 GLY 309 SER 310 GLN 311 GLY 312 GLU 313 PRO 314 MET 315 ALA 316 ALA 317 LEU 318 SER 319 ARG 320 MET 321 ALA 322 ASN 323 ARG 324 ASP 325 HIS 326 GLN 327 ILE 328 ARG 329 ILE 330 VAL 331 ASN 332 GLY 333 ASP 334 THR 335 VAL 336 ILE 337 LEU 338 ALA 339 SER 340 SER 341 LEU 342 ILE 343 PRO 344 GLY 345 ASN 346 GLU 347 ASN 348 ALA 349 VAL 350 TYR 351 ARG 352 VAL 353 ILE 354 ASN 355 GLY 356 LEU 357 THR 358 ARG 359 TRP 360 GLY 361 ALA 362 ASN 363 VAL 364 VAL 365 HIS 366 LYS 367 GLY 368 ASN 369 ALA 370 LYS 371 VAL 372 HIS 373 VAL 374 SER 375 GLY 376 HIS 377 ALA 378 SER 379 ALA 380 GLY 381 GLU 382 LEU 383 LEU 384 TYR 385 PHE 386 TYR 387 ASN 388 ILE 389 CYS 390 ARG 391 PRO 392 LYS 393 ASN 394 LEU 395 MET 396 PRO 397 VAL 398 HIS 399 GLY 400 GLU 401 TRP 402 ARG 403 HIS 404 LEU 405 ARG 406 ALA 407 ASN 408 ALA 409 GLU 410 LEU 411 GLY 412 ALA 413 LEU 414 THR 415 GLY 416 VAL 417 PRO 418 HIS 419 ASP 420 ARG 421 ILE 422 VAL 423 ILE 424 ALA 425 GLU 426 ASP 427 GLY 428 VAL 429 VAL 430 VAL 431 ASP 432 LEU 433 VAL 434 GLU 435 GLY 436 LYS 437 ALA 438 LYS 439 ILE 440 THR 441 GLY 442 LYS 443 VAL 444 GLN 445 ALA 446 GLY 447 TYR 448 VAL 449 TYR 450 VAL 451 ASP 452

Nucleic acids

Unit 3	C 0 G 1 C 2 C 3 U 4 C 5
Unit 4	C 0 G 1 C 2 C 3 U 4 C 5

Ligands

Unit 5	PEG 1456 ZN 1457 ZN 1458
Unit 6	PEG 1453 ZN 1454 ZN 1455