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Sequence, Chains, Asymmetric and Biological Units

Title HIGH RESOLUTION STRUCTURE OF M23 PEPTIDASE LYTM WITH SUBSTRA ANALOGUE
Keywords LYTM, LYSOSTAPHIN, PEPTIDOGLYCAN AMIDASE, PEPTIDASE, HYDROLA TETRAGLYCINE PHOSPHINATE, TRANSITION STATE ANALOGUE, COMPLE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4ZYB     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   GLYCYL-GLYCINE ENDOPEPTIDASE LYTM  A 143 2038 80
2  Protein   GLYCYL-GLYCINE ENDOPEPTIDASE LYTM  B 132 1014 0
3  Protein   GLYCYL-GLYCINE ENDOPEPTIDASE LYTM  C 143 2038 80
4  Protein   GLYCYL-GLYCINE ENDOPEPTIDASE LYTM  D 133 1019 0
5  Protein   GLYCYL-GLYCINE ENDOPEPTIDASE LYTM  A 143 2038 80
6  Ligand   GLYCYL-GLYCINE ENDOPEPTIDASE LYTM  B 6 0 32
7  Protein   GLYCYL-GLYCINE ENDOPEPTIDASE LYTM  C 143 2038 80
8  Ligand   GLYCYL-GLYCINE ENDOPEPTIDASE LYTM  D 4 0 21
9 Water     864 0 864
total       1711 10185 1237

Proteins
Unit 1 ALA184 HIS185 ALA186 LYS187 ASP188 ALA189 SER190 TRP191 LEU192 THR193 SER194 ARG195 LYS196 GLN197 LEU198 GLN199 PRO200 TYR201 GLY202 GLN203 TYR204 HIS205 GLY206 GLY207 GLY208 ALA209 HIS210 TYR211 GLY212 VAL213 ASP214 TYR215 ALA216 MET217 PRO218 GLU219 ASN220 SER221 PRO222 VAL223 TYR224 SER225 LEU226 THR227 ASP228 GLY229 THR230 VAL231 VAL232 GLN233 ALA234 GLY235 TRP236 SER237 ASN238 TYR239 GLY240 GLY241 GLY242 ASN243 GLN244 VAL245 THR246 ILE247 LYS248 GLU249 ALA250 ASN251 SER252 ASN253 ASN254 TYR255 GLN256 TRP257 TYR258 MET259 HIS260 ASN261 ASN262 ARG263 LEU264 THR265 VAL266 SER267 ALA268 GLY269 ASP270 LYS271 VAL272 LYS273 ALA274 GLY275 ASP276 GLN277 ILE278 ALA279 TYR280 SER281 GLY282 SER283 THR284 GLY285 ASN286 SER287 THR288 ALA289 PRO290 HIS291 VAL292 HIS293 PHE294 GLN295 ARG296 MET297 SER298 GLY299 GLY300 ILE301 GLY302 ASN303 GLN304 TYR305 ALA306 VAL307 ASP308 PRO309 THR310 SER311 TYR312 LEU313 GLN314 SER315 ARG316 ZN401 CA402 CL403 CL404 UNL405 UNL406 UNL407 EDO408 4SQ409 EPE410
Unit 2 HIS185 ALA186 LYS187 ASP188 ALA189 SER190 TRP191 LEU192 THR193 SER194 ARG195 LYS196 GLN197 LEU198 GLN199 PRO200 TYR201 GLY202 GLN203 TYR204 HIS205 GLY206 GLY207 GLY208 ALA209 HIS210 TYR211 GLY212 VAL213 ASP214 TYR215 ALA216 MET217 PRO218 GLU219 ASN220 SER221 PRO222 VAL223 TYR224 SER225 LEU226 THR227 ASP228 GLY229 THR230 VAL231 VAL232 GLN233 ALA234 GLY235 TRP236 SER237 ASN238 TYR239 GLY240 GLY241 GLY242 ASN243 GLN244 VAL245 THR246 ILE247 LYS248 GLU249 ALA250 ASN251 SER252 ASN253 ASN254 TYR255 GLN256 TRP257 TYR258 MET259 HIS260 ASN261 ASN262 ARG263 LEU264 THR265 VAL266 SER267 ALA268 GLY269 ASP270 LYS271 VAL272 LYS273 ALA274 GLY275 ASP276 GLN277 ILE278 ALA279 TYR280 SER281 GLY282 SER283 THR284 GLY285 ASN286 SER287 THR288 ALA289 PRO290 HIS291 VAL292 HIS293 PHE294 GLN295 ARG296 MET297 SER298 GLY299 GLY300 ILE301 GLY302 ASN303 GLN304 TYR305 ALA306 VAL307 ASP308 PRO309 THR310 SER311 TYR312 LEU313 GLN314 SER315 ARG316
Unit 3 ALA184 HIS185 ALA186 LYS187 ASP188 ALA189 SER190 TRP191 LEU192 THR193 SER194 ARG195 LYS196 GLN197 LEU198 GLN199 PRO200 TYR201 GLY202 GLN203 TYR204 HIS205 GLY206 GLY207 GLY208 ALA209 HIS210 TYR211 GLY212 VAL213 ASP214 TYR215 ALA216 MET217 PRO218 GLU219 ASN220 SER221 PRO222 VAL223 TYR224 SER225 LEU226 THR227 ASP228 GLY229 THR230 VAL231 VAL232 GLN233 ALA234 GLY235 TRP236 SER237 ASN238 TYR239 GLY240 GLY241 GLY242 ASN243 GLN244 VAL245 THR246 ILE247 LYS248 GLU249 ALA250 ASN251 SER252 ASN253 ASN254 TYR255 GLN256 TRP257 TYR258 MET259 HIS260 ASN261 ASN262 ARG263 LEU264 THR265 VAL266 SER267 ALA268 GLY269 ASP270 LYS271 VAL272 LYS273 ALA274 GLY275 ASP276 GLN277 ILE278 ALA279 TYR280 SER281 GLY282 SER283 THR284 GLY285 ASN286 SER287 THR288 ALA289 PRO290 HIS291 VAL292 HIS293 PHE294 GLN295 ARG296 MET297 SER298 GLY299 GLY300 ILE301 GLY302 ASN303 GLN304 TYR305 ALA306 VAL307 ASP308 PRO309 THR310 SER311 TYR312 LEU313 GLN314 SER315 ARG316 ZN401 CA402 CL403 CL404 UNL405 UNL406 UNL407 EDO408 4SQ409 EPE410
Unit 4 ALA184 HIS185 ALA186 LYS187 ASP188 ALA189 SER190 TRP191 LEU192 THR193 SER194 ARG195 LYS196 GLN197 LEU198 GLN199 PRO200 TYR201 GLY202 GLN203 TYR204 HIS205 GLY206 GLY207 GLY208 ALA209 HIS210 TYR211 GLY212 VAL213 ASP214 TYR215 ALA216 MET217 PRO218 GLU219 ASN220 SER221 PRO222 VAL223 TYR224 SER225 LEU226 THR227 ASP228 GLY229 THR230 VAL231 VAL232 GLN233 ALA234 GLY235 TRP236 SER237 ASN238 TYR239 GLY240 GLY241 GLY242 ASN243 GLN244 VAL245 THR246 ILE247 LYS248 GLU249 ALA250 ASN251 SER252 ASN253 ASN254 TYR255 GLN256 TRP257 TYR258 MET259 HIS260 ASN261 ASN262 ARG263 LEU264 THR265 VAL266 SER267 ALA268 GLY269 ASP270 LYS271 VAL272 LYS273 ALA274 GLY275 ASP276 GLN277 ILE278 ALA279 TYR280 SER281 GLY282 SER283 THR284 GLY285 ASN286 SER287 THR288 ALA289 PRO290 HIS291 VAL292 HIS293 PHE294 GLN295 ARG296 MET297 SER298 GLY299 GLY300 ILE301 GLY302 ASN303 GLN304 TYR305 ALA306 VAL307 ASP308 PRO309 THR310 SER311 TYR312 LEU313 GLN314 SER315 ARG316
Unit 5 ALA184 HIS185 ALA186 LYS187 ASP188 ALA189 SER190 TRP191 LEU192 THR193 SER194 ARG195 LYS196 GLN197 LEU198 GLN199 PRO200 TYR201 GLY202 GLN203 TYR204 HIS205 GLY206 GLY207 GLY208 ALA209 HIS210 TYR211 GLY212 VAL213 ASP214 TYR215 ALA216 MET217 PRO218 GLU219 ASN220 SER221 PRO222 VAL223 TYR224 SER225 LEU226 THR227 ASP228 GLY229 THR230 VAL231 VAL232 GLN233 ALA234 GLY235 TRP236 SER237 ASN238 TYR239 GLY240 GLY241 GLY242 ASN243 GLN244 VAL245 THR246 ILE247 LYS248 GLU249 ALA250 ASN251 SER252 ASN253 ASN254 TYR255 GLN256 TRP257 TYR258 MET259 HIS260 ASN261 ASN262 ARG263 LEU264 THR265 VAL266 SER267 ALA268 GLY269 ASP270 LYS271 VAL272 LYS273 ALA274 GLY275 ASP276 GLN277 ILE278 ALA279 TYR280 SER281 GLY282 SER283 THR284 GLY285 ASN286 SER287 THR288 ALA289 PRO290 HIS291 VAL292 HIS293 PHE294 GLN295 ARG296 MET297 SER298 GLY299 GLY300 ILE301 GLY302 ASN303 GLN304 TYR305 ALA306 VAL307 ASP308 PRO309 THR310 SER311 TYR312 LEU313 GLN314 SER315 ARG316 ZN401 CA402 CL403 CL404 UNL405 UNL406 UNL407 EDO408 4SQ409 EPE410
Unit 7 ALA184 HIS185 ALA186 LYS187 ASP188 ALA189 SER190 TRP191 LEU192 THR193 SER194 ARG195 LYS196 GLN197 LEU198 GLN199 PRO200 TYR201 GLY202 GLN203 TYR204 HIS205 GLY206 GLY207 GLY208 ALA209 HIS210 TYR211 GLY212 VAL213 ASP214 TYR215 ALA216 MET217 PRO218 GLU219 ASN220 SER221 PRO222 VAL223 TYR224 SER225 LEU226 THR227 ASP228 GLY229 THR230 VAL231 VAL232 GLN233 ALA234 GLY235 TRP236 SER237 ASN238 TYR239 GLY240 GLY241 GLY242 ASN243 GLN244 VAL245 THR246 ILE247 LYS248 GLU249 ALA250 ASN251 SER252 ASN253 ASN254 TYR255 GLN256 TRP257 TYR258 MET259 HIS260 ASN261 ASN262 ARG263 LEU264 THR265 VAL266 SER267 ALA268 GLY269 ASP270 LYS271 VAL272 LYS273 ALA274 GLY275 ASP276 GLN277 ILE278 ALA279 TYR280 SER281 GLY282 SER283 THR284 GLY285 ASN286 SER287 THR288 ALA289 PRO290 HIS291 VAL292 HIS293 PHE294 GLN295 ARG296 MET297 SER298 GLY299 GLY300 ILE301 GLY302 ASN303 GLN304 TYR305 ALA306 VAL307 ASP308 PRO309 THR310 SER311 TYR312 LEU313 GLN314 SER315 ARG316 ZN401 CA402 CL403 CL404 UNL405 UNL406 UNL407 EDO408 4SQ409 EPE410

Ligands
Unit 6 ZN401 CA402 CL403 PEG404 EDO405 4SQ406
Unit 8 ZN401 CA402 CL403 4SQ404

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany