4ZQ9 - Sequence, Chains, Asymmetric and Biological Units

• Title: X-RAY STRUCTURE OF AAV-2 OBD BOUND TO AAVS1 SITE 3:1
• Keywords: DNA BINDING PROTEIN, ADENO-ASSOCIATED VIRUS, NUCLEASE, ORIGI PROTEIN, DNA BINDING PROTEIN-DNA COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4ZQ9	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	PROTEIN REP68	A	185	1515	0
2	Protein	PROTEIN REP68	B	189	1539	0
3	Protein	PROTEIN REP68	C	187	1527	0
4	Other macromolecule	DNA (5'- D(*GP*CP*GP*CP*TP*CP*GP*CP*TP*CP*GP*CP*TP*CP*GP*CP*TP*GP*GP 3')	D	21	424	0
5	Other macromolecule	DNA (5'- D(*CP*GP*CP*CP*CP*AP*GP*CP*GP*AP*GP*CP*GP*AP*GP*CP*GP*AP*GP 3')	E	21	431	0
6	Ligand	PROTEIN REP68	A	1	0	1
7	Ligand	PROTEIN REP68	C	1	0	1
8	Water			58	0	58
total				663	5436	60

Proteins

Unit 1	PRO 2 GLY 3 PHE 4 TYR 5 GLU 6 ILE 7 VAL 8 ILE 9 LYS 10 VAL 11 PRO 12 SER 13 ASP 14 ILE 22 SER 23 ASP 24 SER 25 PHE 26 VAL 27 ASN 28 TRP 29 VAL 30 ALA 31 GLU 32 LYS 33 GLU 34 TRP 35 GLU 36 LEU 37 PRO 38 PRO 39 ASP 40 SER 41 ASP 42 MET 43 ASP 44 LEU 45 ASN 46 LEU 47 ILE 48 GLU 49 GLN 50 ALA 51 PRO 52 LEU 53 THR 54 VAL 55 ALA 56 GLU 57 LYS 58 LEU 59 GLN 60 ARG 61 ASP 62 PHE 63 LEU 64 THR 65 GLU 66 TRP 67 ARG 68 ARG 69 VAL 70 SER 71 LYS 72 ALA 73 PRO 74 GLU 75 ALA 76 LEU 77 PHE 78 PHE 79 VAL 80 GLN 81 PHE 82 GLU 83 LYS 84 GLY 85 GLU 86 SER 87 TYR 88 PHE 89 HIS 90 MET 91 HIS 92 VAL 93 LEU 94 VAL 95 GLU 96 THR 97 THR 98 GLY 99 VAL 100 LYS 101 SER 102 MET 103 VAL 104 LEU 105 GLY 106 ARG 107 PHE 108 LEU 109 SER 110 GLN 111 ILE 112 ARG 113 GLU 114 LYS 115 LEU 116 ILE 117 GLN 118 ARG 119 ILE 120 TYR 121 ARG 122 GLY 123 ILE 124 GLU 125 PRO 126 THR 127 LEU 128 PRO 129 ASN 130 TRP 131 PHE 132 ALA 133 VAL 134 THR 135 LYS 136 THR 137 ARG 138 ASN 139 GLY 140 ALA 141 GLY 142 GLY 143 GLY 144 ASN 145 LYS 146 VAL 147 VAL 148 ASP 149 GLU 150 SER 151 TYR 152 ILE 153 PRO 154 ASN 155 PHE 156 LEU 157 LEU 158 PRO 159 LYS 160 THR 161 GLN 162 PRO 163 GLU 164 LEU 165 GLN 166 TRP 167 ALA 168 TRP 169 THR 170 ASN 171 MET 172 GLU 173 GLN 174 TYR 175 LEU 176 SER 177 ALA 178 CYS 179 LEU 180 ASN 181 LEU 182 THR 183 GLU 184 ARG 185 LYS 186 ARG 187 LEU 188 VAL 189 ALA 190 GLN 191 HIS 192 LEU 193
Unit 2	PRO 2 GLY 3 PHE 4 TYR 5 GLU 6 ILE 7 VAL 8 ILE 9 LYS 10 VAL 11 PRO 12 SER 13 ASP 14 LEU 15 ASP 16 GLY 21 ILE 22 SER 23 ASP 24 SER 25 PHE 26 VAL 27 ASN 28 TRP 29 VAL 30 ALA 31 GLU 32 LYS 33 GLU 34 TRP 35 GLU 36 LEU 37 PRO 38 PRO 39 ASP 40 SER 41 ASP 42 MET 43 ASP 44 LEU 45 ASN 46 LEU 47 ILE 48 GLU 49 GLN 50 ALA 51 PRO 52 LEU 53 THR 54 VAL 55 ALA 56 GLU 57 LYS 58 LEU 59 GLN 60 ARG 61 ASP 62 PHE 63 LEU 64 THR 65 GLU 66 TRP 67 ARG 68 ARG 69 VAL 70 SER 71 LYS 72 ALA 73 PRO 74 GLU 75 ALA 76 LEU 77 PHE 78 PHE 79 VAL 80 GLN 81 PHE 82 GLU 83 LYS 84 GLY 85 GLU 86 SER 87 TYR 88 PHE 89 HIS 90 MET 91 HIS 92 VAL 93 LEU 94 VAL 95 GLU 96 THR 97 THR 98 GLY 99 VAL 100 LYS 101 SER 102 MET 103 VAL 104 LEU 105 GLY 106 ARG 107 PHE 108 LEU 109 SER 110 GLN 111 ILE 112 ARG 113 GLU 114 LYS 115 LEU 116 ILE 117 GLN 118 ARG 119 ILE 120 TYR 121 ARG 122 GLY 123 ILE 124 GLU 125 PRO 126 THR 127 LEU 128 PRO 129 ASN 130 TRP 131 PHE 132 ALA 133 VAL 134 THR 135 LYS 136 THR 137 ARG 138 ASN 139 GLY 140 ALA 141 GLY 142 GLY 143 GLY 144 ASN 145 LYS 146 VAL 147 VAL 148 ASP 149 GLU 150 SER 151 TYR 152 ILE 153 PRO 154 ASN 155 PHE 156 LEU 157 LEU 158 PRO 159 LYS 160 THR 161 GLN 162 PRO 163 GLU 164 LEU 165 GLN 166 TRP 167 ALA 168 TRP 169 THR 170 ASN 171 MET 172 GLU 173 GLN 174 TYR 175 LEU 176 SER 177 ALA 178 CYS 179 LEU 180 ASN 181 LEU 182 THR 183 GLU 184 ARG 185 LYS 186 ARG 187 LEU 188 VAL 189 ALA 190 GLN 191 HIS 192 LEU 193 THR 194
Unit 3	PRO 2 GLY 3 PHE 4 TYR 5 GLU 6 ILE 7 VAL 8 ILE 9 LYS 10 VAL 11 PRO 12 SER 13 ASP 14 SER 23 ASP 24 SER 25 PHE 26 VAL 27 ASN 28 TRP 29 VAL 30 ALA 31 GLU 32 LYS 33 GLU 34 TRP 35 GLU 36 LEU 37 PRO 38 PRO 39 ASP 40 SER 41 ASP 42 MET 43 ASP 44 LEU 45 ASN 46 LEU 47 ILE 48 GLU 49 GLN 50 ALA 51 PRO 52 LEU 53 THR 54 VAL 55 ALA 56 GLU 57 LYS 58 LEU 59 GLN 60 ARG 61 ASP 62 PHE 63 LEU 64 THR 65 GLU 66 TRP 67 ARG 68 ARG 69 VAL 70 SER 71 LYS 72 ALA 73 PRO 74 GLU 75 ALA 76 LEU 77 PHE 78 PHE 79 VAL 80 GLN 81 PHE 82 GLU 83 LYS 84 GLY 85 GLU 86 SER 87 TYR 88 PHE 89 HIS 90 MET 91 HIS 92 VAL 93 LEU 94 VAL 95 GLU 96 THR 97 THR 98 GLY 99 VAL 100 LYS 101 SER 102 MET 103 VAL 104 LEU 105 GLY 106 ARG 107 PHE 108 LEU 109 SER 110 GLN 111 ILE 112 ARG 113 GLU 114 LYS 115 LEU 116 ILE 117 GLN 118 ARG 119 ILE 120 TYR 121 ARG 122 GLY 123 ILE 124 GLU 125 PRO 126 THR 127 LEU 128 PRO 129 ASN 130 TRP 131 PHE 132 ALA 133 VAL 134 THR 135 LYS 136 THR 137 ARG 138 ASN 139 GLY 140 ALA 141 GLY 142 GLY 143 GLY 144 ASN 145 LYS 146 VAL 147 VAL 148 ASP 149 GLU 150 SER 151 TYR 152 ILE 153 PRO 154 ASN 155 PHE 156 LEU 157 LEU 158 PRO 159 LYS 160 THR 161 GLN 162 PRO 163 GLU 164 LEU 165 GLN 166 TRP 167 ALA 168 TRP 169 THR 170 ASN 171 MET 172 GLU 173 GLN 174 TYR 175 LEU 176 SER 177 ALA 178 CYS 179 LEU 180 ASN 181 LEU 182 THR 183 GLU 184 ARG 185 LYS 186 ARG 187 LEU 188 VAL 189 ALA 190 GLN 191 HIS 192 LEU 193 THR 194 HIS 195 VAL 196

Other macromolecules

Unit 4	DG 1 DC 2 DG 3 DC 4 DT 5 DC 6 DG 7 DC 8 DT 9 DC 10 DG 11 DC 12 DT 13 DC 14 DG 15 DC 16 DT 17 DG 18 DG 19 DG 20 DC 21
Unit 5	DC 22 DG 23 DC 24 DC 25 DC 26 DA 27 DG 28 DC 29 DG 30 DA 31 DG 32 DC 33 DG 34 DA 35 DG 36 DC 37 DG 38 DA 39 DG 40 DC 41 DG 42

Ligands

Unit 6	MN 301
Unit 7	MN 301