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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF MERS-CORONAVIRUS SPIKE RECEPTOR-BINDING DOMAIN STRAIN) IN COMPLEX WITH VACCINE-ELICITED MURINE NEUTRALIZIN D12 (CRYSTAL FORM 2)
Keywords VACCINE, IMMUNOGEN, VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4ZPV     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   D12 FAB HEAVY CHAIN  H 213 1595 0
2  Protein   D12 FAB LIGHT CHAIN  L 212 1651 0
3  Protein   SPIKE GLYCOPROTEIN  S 207 1603 0
4  Protein   SPIKE GLYCOPROTEIN  R 208 1611 0
5  Protein   D12 FAB LIGHT CHAIN  B 212 1651 0
6  Protein   D12 FAB HEAVY CHAIN  A 213 1594 0
7  Ligand   SPIKE GLYCOPROTEIN  R 2 0 28
total       1267 9705 28
Proteins
Unit 1 GLU1 VAL2 LYS3 LEU4 VAL5 GLU6 SER7 GLY8 GLY9 GLY10 LEU11 VAL12 LYS13 PRO14 GLY15 GLY16 SER17 LEU18 LYS19 LEU20 SER21 CYS22 ALA23 ALA24 SER25 GLY26 PHE27 THR28 PHE29 SER30 SER31 TYR32 ALA33 MET34 SER35 TRP36 VAL37 ARG38 GLN39 THR40 PRO41 GLU42 LYS43 ARG44 LEU45 GLU46 TRP47 VAL48 ALA49 THR50 ILE51 SER52 SER52A GLY53 GLY54 THR55 TYR56 THR57 TYR58 TYR59 PRO60 ASP61 SER62 VAL63 LYS64 GLY65 ARG66 PHE67 THR68 ILE69 SER70 ARG71 ASP72 ASN73 ALA74 GLU75 ASN76 THR77 LEU78 TYR79 LEU80 GLN81 MET82 SER82A SER82B LEU82C ARG83 SER84 GLU85 ASP86 THR87 ALA88 MET89 TYR90 TYR91 CYS92 VAL93 ARG94 ASP95 GLY96 ASN97 SER98 MET99 ASP101 TYR102 TRP103 GLY104 GLN105 GLY106 THR107 SER108 VAL109 THR110 VAL111 SER112 SER113 ALA114 LYS115 THR116 THR117 ALA118 PRO119 SER120 VAL121 TYR122 PRO123 LEU124 ALA125 PRO126 VAL127 CYS128 THR132 GLY133 SER134 SER135 VAL136 THR137 LEU138 GLY139 CYS140 LEU141 VAL142 LYS143 GLY144 TYR145 PHE146 PRO147 GLU148 PRO149 VAL150 THR151 LEU152 THR153 TRP154 ASN155 SER156 GLY157 SER158 LEU159 SER160 SER161 GLY162 VAL163 HIS164 THR165 PHE166 PRO167 ALA168 VAL169 LEU170 GLN171 SER172 ASP173 LEU174 TYR175 THR176 LEU177 SER178 SER179 SER180 VAL181 THR182 VAL183 THR184 SER185 SER186 THR187 TRP188 PRO189 SER190 GLN191 SER192 ILE193 THR194 CYS195 ASN196 VAL197 ALA198 HIS199 PRO200 ALA201 SER202 SER203 THR204 LYS205 VAL206 ASP207 LYS208 LYS209 ILE210 GLU211 PRO212 ARG213
Unit 2 ASP1 ILE2 GLN3 MET4 THR5 GLN6 THR7 THR8 SER9 SER10 LEU11 SER12 ALA13 SER14 LEU15 GLY16 ASP17 ARG18 VAL19 THR20 ILE21 ILE22 CYS23 ARG24 ALA25 SER26 GLN27 ASP28 ILE29 ASN30 ASN31 TYR32 LEU33 ASN34 TRP35 TYR36 GLN37 GLN38 LYS39 PRO40 ASP41 GLY42 THR43 VAL44 LYS45 LEU46 LEU47 ILE48 TYR49 TYR50 THR51 SER52 ARG53 LEU54 HIS55 SER56 GLY57 VAL58 PRO59 SER60 ARG61 PHE62 SER63 GLY64 SER65 GLY66 SER67 GLY68 SER69 ASP70 TYR71 SER72 LEU73 THR74 ILE75 SER76 ASN77 LEU78 GLU79 GLN80 GLU81 ASP82 ILE83 ALA84 THR85 TYR86 PHE87 CYS88 GLN89 GLN90 ALA91 ASN92 THR93 LEU94 PRO95 PRO96 THR97 PHE98 GLY99 ALA100 GLY101 THR102 LYS103 LEU104 GLU105 LEU106 ARG107 ARG108 ALA109 ASP110 ALA111 ALA112 PRO113 THR114 VAL115 SER116 ILE117 PHE118 PRO119 PRO120 SER121 SER122 GLU123 GLN124 LEU125 THR126 SER127 GLY128 GLY129 ALA130 SER131 VAL132 VAL133 CYS134 PHE135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 LYS142 ASP143 ILE144 ASN145 VAL146 LYS147 TRP148 LYS149 ILE150 ASP151 GLY152 SER153 GLU154 ARG155 GLN156 ASN157 GLY158 VAL159 LEU160 ASN161 SER162 TRP163 THR164 ASP165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 MET175 SER176 SER177 THR178 LEU179 THR180 LEU181 THR182 LYS183 ASP184 GLU185 TYR186 GLU187 ARG188 HIS189 ASN190 SER191 TYR192 THR193 CYS194 GLU195 ALA196 THR197 HIS198 LYS199 THR200 SER201 THR202 SER203 PRO204 ILE205 VAL206 LYS207 SER208 PHE209 ASN210 ARG211 ASN212
Unit 3 VAL381 GLU382 CYS383 ASP384 PHE385 SER386 PRO387 LEU388 LEU389 SER390 GLY391 THR392 PRO393 PRO394 GLN395 VAL396 TYR397 ASN398 PHE399 LYS400 ARG401 LEU402 VAL403 PHE404 THR405 ASN406 CYS407 ASN408 TYR409 ASN410 LEU411 THR412 LYS413 LEU414 LEU415 SER416 LEU417 PHE418 SER419 VAL420 ASN421 ASP422 PHE423 THR424 CYS425 SER426 GLN427 ILE428 SER429 PRO430 ALA431 ALA432 ILE433 ALA434 SER435 ASN436 CYS437 TYR438 SER439 SER440 LEU441 ILE442 LEU443 ASP444 TYR445 PHE446 SER447 TYR448 PRO449 LEU450 SER451 MET452 LYS453 SER454 ASP455 LEU456 SER457 VAL458 SER459 SER460 ALA461 GLY462 PRO463 ILE464 SER465 GLN466 PHE467 ASN468 TYR469 LYS470 GLN471 SER472 PHE473 SER474 ASN475 PRO476 THR477 CYS478 LEU479 ILE480 LEU481 ALA482 THR483 VAL484 PRO485 HIS486 ASN487 LEU488 THR489 THR490 ILE491 THR492 LYS493 PRO494 LEU495 LYS496 TYR497 SER498 TYR499 ILE500 ASN501 LYS502 CYS503 SER504 ARG505 PHE506 LEU507 SER508 ASP509 ASP510 ARG511 THR512 GLU513 VAL514 PRO515 GLN516 LEU517 VAL518 ASN519 ALA520 ASN521 GLN522 TYR523 SER524 PRO525 CYS526 VAL527 SER528 ILE529 VAL530 PRO531 SER532 THR533 VAL534 TRP535 GLU536 ASP537 GLY538 ASP539 TYR540 TYR541 ARG542 LYS543 GLN544 LEU545 SER546 PRO547 LEU548 GLU549 GLY550 GLY551 GLY552 TRP553 LEU554 VAL555 ALA556 SER557 GLY558 SER559 THR560 VAL561 ALA562 MET563 THR564 GLU565 GLN566 LEU567 GLN568 MET569 GLY570 PHE571 GLY572 ILE573 THR574 VAL575 GLN576 TYR577 GLY578 THR579 ASP580 THR581 ASN582 SER583 VAL584 CYS585 PRO586 LYS587
Unit 4 VAL381 GLU382 CYS383 ASP384 PHE385 SER386 PRO387 LEU388 LEU389 SER390 GLY391 THR392 PRO393 PRO394 GLN395 VAL396 TYR397 ASN398 PHE399 LYS400 ARG401 LEU402 VAL403 PHE404 THR405 ASN406 CYS407 ASN408 TYR409 ASN410 LEU411 THR412 LYS413 LEU414 LEU415 SER416 LEU417 PHE418 SER419 VAL420 ASN421 ASP422 PHE423 THR424 CYS425 SER426 GLN427 ILE428 SER429 PRO430 ALA431 ALA432 ILE433 ALA434 SER435 ASN436 CYS437 TYR438 SER439 SER440 LEU441 ILE442 LEU443 ASP444 TYR445 PHE446 SER447 TYR448 PRO449 LEU450 SER451 MET452 LYS453 SER454 ASP455 LEU456 SER457 VAL458 SER459 SER460 ALA461 GLY462 PRO463 ILE464 SER465 GLN466 PHE467 ASN468 TYR469 LYS470 GLN471 SER472 PHE473 SER474 ASN475 PRO476 THR477 CYS478 LEU479 ILE480 LEU481 ALA482 THR483 VAL484 PRO485 HIS486 ASN487 LEU488 THR489 THR490 ILE491 THR492 LYS493 PRO494 LEU495 LYS496 TYR497 SER498 TYR499 ILE500 ASN501 LYS502 CYS503 SER504 ARG505 PHE506 LEU507 SER508 ASP509 ASP510 ARG511 THR512 GLU513 VAL514 PRO515 GLN516 LEU517 VAL518 ASN519 ALA520 ASN521 GLN522 TYR523 SER524 PRO525 CYS526 VAL527 SER528 ILE529 VAL530 PRO531 SER532 THR533 VAL534 TRP535 GLU536 ASP537 GLY538 ASP539 TYR540 TYR541 ARG542 LYS543 GLN544 LEU545 SER546 PRO547 LEU548 GLU549 GLY550 GLY551 GLY552 TRP553 LEU554 VAL555 ALA556 SER557 GLY558 SER559 THR560 VAL561 ALA562 MET563 THR564 GLU565 GLN566 LEU567 GLN568 MET569 GLY570 PHE571 GLY572 ILE573 THR574 VAL575 GLN576 TYR577 GLY578 THR579 ASP580 THR581 ASN582 SER583 VAL584 CYS585 PRO586 LYS587 LEU588
Unit 5 ASP1 ILE2 GLN3 MET4 THR5 GLN6 THR7 THR8 SER9 SER10 LEU11 SER12 ALA13 SER14 LEU15 GLY16 ASP17 ARG18 VAL19 THR20 ILE21 ILE22 CYS23 ARG24 ALA25 SER26 GLN27 ASP28 ILE29 ASN30 ASN31 TYR32 LEU33 ASN34 TRP35 TYR36 GLN37 GLN38 LYS39 PRO40 ASP41 GLY42 THR43 VAL44 LYS45 LEU46 LEU47 ILE48 TYR49 TYR50 THR51 SER52 ARG53 LEU54 HIS55 SER56 GLY57 VAL58 PRO59 SER60 ARG61 PHE62 SER63 GLY64 SER65 GLY66 SER67 GLY68 SER69 ASP70 TYR71 SER72 LEU73 THR74 ILE75 SER76 ASN77 LEU78 GLU79 GLN80 GLU81 ASP82 ILE83 ALA84 THR85 TYR86 PHE87 CYS88 GLN89 GLN90 ALA91 ASN92 THR93 LEU94 PRO95 PRO96 THR97 PHE98 GLY99 ALA100 GLY101 THR102 LYS103 LEU104 GLU105 LEU106 ARG107 ARG108 ALA109 ASP110 ALA111 ALA112 PRO113 THR114 VAL115 SER116 ILE117 PHE118 PRO119 PRO120 SER121 SER122 GLU123 GLN124 LEU125 THR126 SER127 GLY128 GLY129 ALA130 SER131 VAL132 VAL133 CYS134 PHE135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 LYS142 ASP143 ILE144 ASN145 VAL146 LYS147 TRP148 LYS149 ILE150 ASP151 GLY152 SER153 GLU154 ARG155 GLN156 ASN157 GLY158 VAL159 LEU160 ASN161 SER162 TRP163 THR164 ASP165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 MET175 SER176 SER177 THR178 LEU179 THR180 LEU181 THR182 LYS183 ASP184 GLU185 TYR186 GLU187 ARG188 HIS189 ASN190 SER191 TYR192 THR193 CYS194 GLU195 ALA196 THR197 HIS198 LYS199 THR200 SER201 THR202 SER203 PRO204 ILE205 VAL206 LYS207 SER208 PHE209 ASN210 ARG211 ASN212
Unit 6 GLU1 VAL2 LYS3 LEU4 VAL5 GLU6 SER7 GLY8 GLY9 GLY10 LEU11 VAL12 LYS13 PRO14 GLY15 GLY16 SER17 LEU18 LYS19 LEU20 SER21 CYS22 ALA23 ALA24 SER25 GLY26 PHE27 THR28 PHE29 SER30 SER31 TYR32 ALA33 MET34 SER35 TRP36 VAL37 ARG38 GLN39 THR40 PRO41 GLU42 LYS43 ARG44 LEU45 GLU46 TRP47 VAL48 ALA49 THR50 ILE51 SER52 SER52A GLY53 GLY54 THR55 TYR56 THR57 TYR58 TYR59 PRO60 ASP61 SER62 VAL63 LYS64 GLY65 ARG66 PHE67 THR68 ILE69 SER70 ARG71 ASP72 ASN73 ALA74 GLU75 ASN76 THR77 LEU78 TYR79 LEU80 GLN81 MET82 SER82A SER82B LEU82C ARG83 SER84 GLU85 ASP86 THR87 ALA88 MET89 TYR90 TYR91 CYS92 VAL93 ARG94 ASP95 GLY96 ASN97 SER98 MET99 ASP101 TYR102 TRP103 GLY104 GLN105 GLY106 THR107 SER108 VAL109 THR110 VAL111 SER112 SER113 ALA114 LYS115 THR116 THR117 ALA118 PRO119 SER120 VAL121 TYR122 PRO123 LEU124 ALA125 PRO126 VAL127 CYS128 THR132 GLY133 SER134 SER135 VAL136 THR137 LEU138 GLY139 CYS140 LEU141 VAL142 LYS143 GLY144 TYR145 PHE146 PRO147 GLU148 PRO149 VAL150 THR151 LEU152 THR153 TRP154 ASN155 SER156 GLY157 SER158 LEU159 SER160 SER161 GLY162 VAL163 HIS164 THR165 PHE166 PRO167 ALA168 VAL169 LEU170 GLN171 SER172 ASP173 LEU174 TYR175 THR176 LEU177 SER178 SER179 SER180 VAL181 THR182 VAL183 THR184 SER185 SER186 THR187 TRP188 PRO189 SER190 GLN191 SER192 ILE193 THR194 CYS195 ASN196 VAL197 ALA198 HIS199 PRO200 ALA201 SER202 SER203 THR204 LYS205 VAL206 ASP207 LYS208 LYS209 ILE210 GLU211 PRO212 ARG213
Ligands
Unit 7 NAG601 NAG602
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany